Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 14

Results: 85

Message from the ISCB: 2017 Outstanding Contributions to ISCB Award Given to Fran Lewitter.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2249, doi. 10.1093/bioinformatics/btx291

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

Message from the ISCB: 2017 ISCB Overton Prize Awarded to Christoph Bock.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2247, doi. 10.1093/bioinformatics/btx290

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

Message from the ISCB: 2017 ISCB Accomplishment by a Senior Scientist Award Given to Pavel Pevzner.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2245, doi. 10.1093/bioinformatics/btx289

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

Message from the ISCB: 2017 ISCB Innovator Award Given to Aviv Regev.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2243, doi. 10.1093/bioinformatics/btx288

By:

Fogg, Christiana N.;
Kovats, Diane E.;
Berger, Bonnie

Publication type:

Article

HLA-MA: simple yet powerful matching of samples using HLA typing results.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2241, doi. 10.1093/bioinformatics/btx132

By:

Messerschmidt, Clemens;
Holtgrewe, Manuel;
Beule, Dieter

Publication type:

Article

PathwayMapper: a collaborative visual web editor for cancer pathways and genomic data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2238, doi. 10.1093/bioinformatics/btx149

By:

Bahceci, Istemi;
Dogrusoz, Ugur;
La, Konnor C.;
Babur, Özgün;
Jianjiong Gao;
Schultz, Nikolaus

Publication type:

Article

MetCCS predictor: a web server for predicting collision cross-section values of metabolites in ion mobility-mass spectrometry based metabolomics.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2235, doi. 10.1093/bioinformatics/btx140

By:

Zhiwei Zhou;
Xin Xiong;
Zheng-Jiang Zhu

Publication type:

Article

Estimating gene regulatory networks with pandaR.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2232, doi. 10.1093/bioinformatics/btx139

By:

Schlauch, Daniel;
Paulson, Joseph N.;
Young, Albert;
Glass, Kimberly;
Quackenbush, John

Publication type:

Article

SmartR: an open-source platform for interactive visual analytics for translational research data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2229, doi. 10.1093/bioinformatics/btx137

By:

Herzinger, Sascha;
Wei Gu;
Satagopam, Venkata;
Eifes, Serge;
Rege, Kavita;
Barbosa-Silva, Adriano;
Schneider, Reinhard

Publication type:

Article

MaBoSS 2.0: an environment for stochastic Boolean modeling.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2226, doi. 10.1093/bioinformatics/btx123

By:

Stoll, Gautier;
Caron, Barthélémy;
Viara, Eric;
Dugourd, Aurélien;
Zinovyev, Andrei;
Naldi, Aurélien;
Kroemer, Guido;
Barillot, Emmanuel;
Calzone, Laurence

Publication type:

Article

Constructing linkage maps in the genomics era with MapDisto 2.0.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2224, doi. 10.1093/bioinformatics/btx177

By:

Heffelfinger, Christopher;
Fragoso, Christopher A.;
Lorieux, Mathias

Publication type:

Article

SIApopr: a computational method to simulate evolutionary branching trees for analysis of tumor clonal evolution.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2221, doi. 10.1093/bioinformatics/btx146

By:

McDonald, Thomas O.;
Michor, Franziska

Publication type:

Article

The RNASeq-er API--a gateway to systematically updated analysis of public RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2218, doi. 10.1093/bioinformatics/btx143

By:

Petryszak, Robert;
Fonseca, Nuno A.;
Füllgrabe, Anja;
Huerta, Laura;
Keays, Maria;
Tang, Y. Amy;
Brazma, Alvis

Publication type:

Article

rMATS-DVR: rMATS discovery of differential variants in RNA.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2216, doi. 10.1093/bioinformatics/btx128

By:

Jinkai Wang;
Yang Pan;
Shihao Shen;
Lan Lin;
Yi Xing

Publication type:

Article

DLTree: efficient and accurate phylogeny reconstruction using the dynamical language method.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2214, doi. 10.1093/bioinformatics/btx158

By:

Qi Wu;
Zu-Guo Yu;
Jianyi Yang

Publication type:

Article

Aozan: an automated post-sequencing data-processing pipeline.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2212, doi. 10.1093/bioinformatics/btx154

By:

Perrin, Sandrine;
Firmo, Cyril;
Lemoine, Sophie;
Le Crom, Stéphane;
Jourdren, Laurent

Publication type:

Article

ConKit: a python interface to contact predictions.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2209, doi. 10.1093/bioinformatics/btx148

By:

Simkovic, Felix;
Thomas, Jens M. H.;
Rigden, Daniel J.

Publication type:

Article

poRe GUIs for parallel and real-time processing of MinION sequence data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2207, doi. 10.1093/bioinformatics/btx136

By:

Stewart, Robert D.;
Watson, Mick

Publication type:

Article

ResistoMap--online visualization of human gut microbiota antibiotic resistome.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2205, doi. 10.1093/bioinformatics/btx134

By:

Yarygin, Konstantin S.;
Kovarsky, Boris A.;
Bibikova, Tatyana S.;
Melnikov, Damir S.;
Tyakht, Alexander V.;
Alexeev, Dmitry G.

Publication type:

Article

GenomeScope: fast reference-free genome profiling from short reads.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2202, doi. 10.1093/bioinformatics/btx153

By:

Vurture, Gregory W.;
Sedlazeck, Fritz J.;
Nattestad, Maria;
Underwood, Charles J.;
Han Fang;
Gurtowski, James;
Schatz, Michael C.

Publication type:

Article

HiC-spector: a matrix library for spectral and reproducibility analysis of Hi-C contact maps.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2199, doi. 10.1093/bioinformatics/btx152

By:

Koon-Kiu Yan;
Yardımcı, Galip Gürkan;
Chengfei Yan;
Noble, William S.;
Gerstein, Mark

Publication type:

Article

SynMap2 and SynMap3D: web-based whole-genome synteny browsers.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2197, doi. 10.1093/bioinformatics/btx144

By:

Haug-Baltzell, Asher;
Stephens, Sean A.;
Davey, Sean;
Scheidegger, Carlos E.;
Lyons, Eric

Publication type:

Article

Dynamix: dynamic visualization by automatic selection of informative tracks from hundreds of genomic datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2194, doi. 10.1093/bioinformatics/btx141

By:

Monfort, Matthias;
Furlong, Eileen E. M.;
Girardot, Charles

Publication type:

Article

DNA Compass: a secure, client-side site for navigating personal genetic information.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2191, doi. 10.1093/bioinformatics/btx135

By:

Curnin, Charles;
Gordon, Assaf;
Erlich, Yaniv

Publication type:

Article

Morphologically constrained spectral unmixing by dictionary learning for multiplex fluorescence microscopy.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2182, doi. 10.1093/bioinformatics/btx108

By:

Megjhani, Murad;
de Sampaio, Pedro Correa;
Carstens, Julienne Leigh;
Kalluri, Raghu;
Roysam, Badrinath

Publication type:

Article

VCNet: vector-based gene co-expression network construction and its application to RNA-seq data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2173, doi. 10.1093/bioinformatics/btx131

By:

Zengmiao Wang;
Huaying Fang;
Leung-Sang Tang, Nelson;
Minghua Deng

Publication type:

Article

Stepwise inference of likely dynamic flux distributions from metabolic time series data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2165, doi. 10.1093/bioinformatics/btx126

By:

Faraji, Mojdeh;
Voit, Eberhard O.

Publication type:

Article

SANA: simulated annealing far outperforms many other search algorithms for biological network alignment.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2156, doi. 10.1093/bioinformatics/btx090

By:

Mamano, Nil;
Hayes, Wayne B.

Publication type:

Article

Fast admixture analysis and population tree estimation for SNP and NGS data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2148, doi. 10.1093/bioinformatics/btx098

By:

Jade Yu Cheng;
Mailund, Thomas;
Nielsen, Rasmus

Publication type:

Article

Meta-analytic framework for liquid association.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2140, doi. 10.1093/bioinformatics/btx138

By:

Lin Wang;
Silvia Liu;
Ying Ding;
Shin-sheng Yuan;
Yen-Yi Ho;
Tseng, George C.

Publication type:

Article

Quantifying circular RNA expression from RNA-seq data using model-based framework.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2131, doi. 10.1093/bioinformatics/btx129

By:

Musheng Li;
Xueying Xie;
Jing Zhou;
Mengying Sheng;
Xiaofeng Yin;
Eun-A Ko;
Tong Zhou;
Wanjun Gu

Publication type:

Article

QRank: a novel quantile regression tool for eQTL discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2123, doi. 10.1093/bioinformatics/btx119

By:

Xiaoyu Song;
Gen Li;
Zhenwei Zhou;
Xianling Wang;
Ionita-Laza, Iuliana;
Ying Wei

Publication type:

Article

Fast, clash-free RNA conformational morphing using molecular junctions.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2114, doi. 10.1093/bioinformatics/btx127

By:

Héliou, Amélie;
Budday, Dominik;
Fonseca, Rasmus;
van den Bedem, Henry

Publication type:

Article

A network model predicts the intensity of residue-protein thermal coupling.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2106, doi. 10.1093/bioinformatics/btx124

By:

Censoni, Luciano;
dos Santos Muniz, Heloisa;
Martínez, Leandro

Publication type:

Article

Computational modeling of in vivo and in vitro protein-DNA interactions by multiple instance learning.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2097, doi. 10.1093/bioinformatics/btx115

By:

Zhen Gao;
Jianhua Ruan

Publication type:

Article

RNAscClust: clustering RNA sequences using structure conservation and graph based motifs.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2089, doi. 10.1093/bioinformatics/btx114

By:

Miladi, Milad;
Junge, Alexander;
Costa, Fabrizio;
Seemann, Stefan E.;
Havgaard, Jakob Hull;
Gorodkin, Jan;
Backofen, Rolf

Publication type:

Article

Pseudoalignment for metagenomic read assignment.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2082, doi. 10.1093/bioinformatics/btx106

By:

Schaeffer, L.;
Pimentel, H.;
Bray, N.;
Melsted, P.;
Pachter, L.

Publication type:

Article

Tagging SNP-set selection with maximum information based on linkage disequilibrium structure in genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2078, doi. 10.1093/bioinformatics/btx151

By:

Shudong Wang;
Sicheng He;
Fayou Yuan;
Xinjie Zhu

Publication type:

Article

swga: a primer design toolkit for selective whole genome amplification.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. 2071, doi. 10.1093/bioinformatics/btx118

By:

Clarke, Erik L.;
Sundararaman, Sesh A.;
Seifert, Stephanie N.;
Bushman, Frederic D.;
Hahn, Beatrice H.;
Brisson, Dustin

Publication type:

Article

When loss-of-function is loss of function: assessing mutational signatures and impact of loss-of-function genetic variants.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i389, doi. 10.1093/bioinformatics/btx272

By:

Pagel, Kymberleigh A.;
Pejaver, Vikas;
Guan Ning Lin;
Hyun-Jun Nam;
Mort, Matthew;
Cooper, David N.;
Sebat, Jonathan;
Iakoucheva, Lilia M.;
Mooney, Sean D.;
Radivojac, Predrag

Publication type:

Article

Increasing the power of meta-analysis of genome-wide association studies to detect heterogeneous effects.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i379, doi. 10.1093/bioinformatics/btx242

By:

Lee, C. H.;
Eskin, E.;
Han, B.

Publication type:

Article

Genomes as documents of evolutionary history: a probabilistic macrosynteny model for the reconstruction of ancestral genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i369, doi. 10.1093/bioinformatics/btx259

By:

Yoichiro Nakatani;
McLysaght, Aoife

Publication type:

Article

Systematic identification of feature combinations for predicting drug response with Bayesian multi-view multi-task linear regression.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i359, doi. 10.1093/bioinformatics/btx266

By:

Ammad-ud-din, Muhammad;
Khan, Suleiman A.;
Wennerberg, Krister;
Aittokallio, Tero

Publication type:

Article

Predicting phenotypes from microarrays using amplified, initially marginal, eigenvector regression.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i350, doi. 10.1093/bioinformatics/btx265

By:

Lei Ding;
McDonald, Daniel J.

Publication type:

Article

Identification of associations between genotypes and longitudinal phenotypes via temporally-constrained group sparse canonical correlation analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i341, doi. 10.1093/bioinformatics/btx245

By:

Xiaoke Hao;
Chanxiu Li;
Jingwen Yan;
Xiaohui Yao;
Risacher, Shannon L.;
Saykin, Andrew J.;
Li Shen;
Daoqiang Zhang

Publication type:

Article

Molecular signatures that can be transferred across different omics platforms.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i333, doi. 10.1093/bioinformatics/btx241

By:

Altenbuchinger, M.;
Schwarzfischer, P.;
Rehberg, T.;
Reinders, J.;
Kohler, Ch. W.;
Gronwald, W.;
Richter, J.;
Szczepanowski, M.;
Masqué-Soler, N.;
Klapper, W.;
Oefner, P. J.;
Spang, R.

Publication type:

Article

Association testing of bisulfite-sequencing methylation data via a Laplace approximation.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i325, doi. 10.1093/bioinformatics/btx248

By:

Weissbrod, Omer;
Rahmani, Elior;
Schweiger, Regev;
Rosset, Saharon;
Halperin, Eran

Publication type:

Article

Efficient simulation of intrinsic, extrinsic and external noise in biochemical systems.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i319, doi. 10.1093/bioinformatics/btx253

By:

Pischel, Dennis;
Sundmacher, Kai;
Flassig, Robert J.

Publication type:

Article

popFBA: tackling intratumour heterogeneity with Flux Balance Analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i311, doi. 10.1093/bioinformatics/btx251

By:

Damiani, Chiara;
Di Filippo, Marzia;
Pescini, Dario;
Maspero, Davide;
Colombo, Riccardo;
Mauri, Giancarlo

Publication type:

Article

Estimation of time-varying growth, uptake and excretion rates from dynamic metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 14, p. i301, doi. 10.1093/bioinformatics/btx250

By:

Cinquemani, Eugenio;
Laroute, Valérie;
Cocaign-Bousquet, Muriel;
de Jong, Hidde;
Ropers, Delphine

Publication type:

Article