Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 13

Results: 30

Oncopression: gene expression compendium for cancer with matched normal tissues.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2068, doi. 10.1093/bioinformatics/btx121

By:

Jungsul Lee;
Chulhee Choi

Publication type:

Article

Pln24NT: a web resource for plant 24-nt siRNA producing loci.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2065, doi. 10.1093/bioinformatics/btx096

By:

Qi Liu;
Changjun Ding;
Yanguang Chu;
Weixi Zhang;
Ganggang Guo;
Jiafei Chen;
Xiaohua Su

Publication type:

Article

DeepBlueR: large-scale epigenomic analysis in R.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2063, doi. 10.1093/bioinformatics/btx099

By:

Albrecht, Felipe;
List, Markus;
Bock, Christoph;
Lengauer, Thomas

Publication type:

Article

GARLIC: Genomic Autozygosity Regions Likelihood-based Inference and Classification.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2059, doi. 10.1093/bioinformatics/btx102

By:

Szpiech, Zachary A.;
Blant, Alexandra;
Pemberton, Trevor J.

Publication type:

Article

LASER server: ancestry tracing with genotypes or sequence reads.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2056, doi. 10.1093/bioinformatics/btx075

By:

Taliun, Daniel;
Chothani, Sonia P.;
Schönherr, Sebastian;
Forer, Lukas;
Boehnke, Michael;
Abecasis, Gonçalo R.;
Chaolong Wang

Publication type:

Article

ctsGE--clustering subgroups of expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2053, doi. 10.1093/bioinformatics/btx116

By:

Sharabi-Schwager, Michal;
Or, Etti;
Ophir, Ron

Publication type:

Article

Glimma: interactive graphics for gene expression analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2050, doi. 10.1093/bioinformatics/btx094

By:

Shian Su;
Law, Charity W.;
Ah-Cann, Casey;
Asselin-Labat, Marie-Liesse;
Blewitt, Marnie E.;
Ritchie, Matthew E.

Publication type:

Article

BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2047, doi. 10.1093/bioinformatics/btx101

By:

Jianjiong Gao;
Prlić, Andreas;
Chunxiao Bi;
Bluhm, Wolfgang F.;
Dimitropoulos, Dimitris;
Dong Xu;
Bourne, Philip E.;
Rose, Peter W.

Publication type:

Article

AQUA-DUCT: a ligands tracking tool.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2045, doi. 10.1093/bioinformatics/btx125

By:

Magdziarz, Tomasz;
Mitusińska, Karolina;
Gołdowska, Sandra;
Płuciennik, Alicja;
Stolarczyk, Michał;
Ługowska, Magdalena;
Góra, Artur

Publication type:

Article

PeptideMapper: efficient and versatile amino acid sequence and tag mapping.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2042, doi. 10.1093/bioinformatics/btx122

By:

Kopczynski, Dominik;
Barsnes, Harald;
Njølstad, Pål R.;
Sickmann, Albert;
Vaudel, Marc;
Ahrends, Robert

Publication type:

Article

ProtVista: visualization of protein sequence annotations.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2040, doi. 10.1093/bioinformatics/btx120

By:

Watkins, Xavier;
Garcia, Leyla J.;
Pundir, Sangya;
Martin, Maria J.

Publication type:

Article

BCFtools/csq: haplotype-aware variant consequences.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2037, doi. 10.1093/bioinformatics/btx100

By:

Danecek, Petr;
McCarthy, Shane A.

Publication type:

Article

Threshold-seq: a tool for determining the threshold in short RNA-seq datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2034, doi. 10.1093/bioinformatics/btx073

By:

Magee, Rogan;
Loher, Phillipe;
Londin, Eric;
Rigoutsos, Isidore

Publication type:

Article

SVPV: a structural variant prediction viewer for paired-end sequencing datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2032, doi. 10.1093/bioinformatics/btx117

By:

Munro, Jacob E.;
Dunwoodie, Sally L.;
Giannoulatou, Eleni

Publication type:

Article

MotifMap-RNA: a genome-wide map of RBP binding sites.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2029, doi. 10.1093/bioinformatics/btx087

By:

Yu Liu;
Sha Sun;
Bredy, Timothy;
Wood, Marcelo;
Spitale, Robert C.;
Baldi, Pierre

Publication type:

Article

fastER: a user-friendly tool for ultrafast and robust cell segmentation in large-scale microscopy.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2020, doi. 10.1093/bioinformatics/btx107

By:

Hilsenbeck, Oliver;
Schwarzfischer, Michael;
Loeffler, Dirk;
Dimopoulos, Sotiris;
Hastreiter, Simon;
Marr, Carsten;
Theis, Fabian J.;
Schroeder, Timm

Publication type:

Article

A multi-scale convolutional neural network for phenotyping high-content cellular images.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2010, doi. 10.1093/bioinformatics/btx069

By:

Godinez, William J.;
Hossain, Imtiaz;
Lazic, Stanley E.;
Davies, John W.;
Xian Zhang

Publication type:

Article

Image-based surrogate biomarkers for molecular subtypes of colorectal cancer.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 2002, doi. 10.1093/bioinformatics/btx027

By:

Popovici, Vlad;
Budinská, Eva;
Dušek, Ladislav;
Kozubek, Michal;
Bosman, Fred

Publication type:

Article

Systematic inference of functional phosphorylation events in yeast metabolism.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1995, doi. 10.1093/bioinformatics/btx110

By:

Yu Chen;
Yonghong Wang;
Nielsen, Jens

Publication type:

Article

An approach to infer putative disease-specific mechanisms using neighboring gene networks.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1987, doi. 10.1093/bioinformatics/btx097

By:

Ansari, Sahar;
Donato, Michele;
Saberian, Nafiseh;
Draghici, Sorin

Publication type:

Article

Abstracting the dynamics of biological pathways using information theory: a case study of apoptosis pathway.

Published in:

2017

By:

Palaniappan, Sucheendra K.;
Bertaux, François;
Pichené, Matthieu;
Fabre, Eric;
Batt, Gregory;
Genest, Blaise

Publication type:

Case Study

Identification of genetic outliers due to sub-structure and cryptic relationships.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1972, doi. 10.1093/bioinformatics/btx109

By:

Schlauch, Daniel;
Fier, Heide;
Lange, Christoph

Publication type:

Article

A generalized association test based on U statistics.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1963, doi. 10.1093/bioinformatics/btx103

By:

Changshuai Wei;
Qing Lu

Publication type:

Article

RefBool: a reference-based algorithm for discretizing gene expression data.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1953, doi. 10.1093/bioinformatics/btx111

By:

Jung, Sascha;
Hartmann, Andras;
del Sol, Antonio

Publication type:

Article

FUNNEL-GSEA: FUNctioNal ELastic-net regression in time-course gene set enrichment analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1944, doi. 10.1093/bioinformatics/btx104

By:

Yun Zhang;
Topham, David J.;
Thakar, Juilee;
Xing Qiu

Publication type:

Article

Discriminating the reaction types of plant type III polyketide synthases.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1937, doi. 10.1093/bioinformatics/btx112

By:

Yugo Shimizu;
Hiroyuki Ogata;
Susumu Goto

Publication type:

Article

BiRen: predicting enhancers with a deep-learning-based model using the DNA sequence alone.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1930, doi. 10.1093/bioinformatics/btx105

By:

Bite Yang;
Feng Liu;
Chao Ren;
Zhangyi Ouyang;
Ziwei Xie;
Xiaochen Bo;
Wenjie Shu

Publication type:

Article

Empirical comparison of web-based antimicrobial peptide prediction tools.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1921, doi. 10.1093/bioinformatics/btx081

By:

Gabere, Musa Nur;
Noble, William Stafford

Publication type:

Article

Integrative analysis identifies co-dependent gene expression regulation of BRG1 and CHD7 at distal regulatory sites in embryonic stem cells.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1916, doi. 10.1093/bioinformatics/btx092

By:

Pengyi Yang;
Oldfield, Andrew;
Taiyun Kim;
Yang, Andrian;
Jean Yee Hwa Yang;
Ho, Joshua W. K.

Publication type:

Article

Changes associated with Ebola virus adaptation to novel species.

Published in:

Bioinformatics, 2017, v. 33, n. 13, p. 1911, doi. 10.1093/bioinformatics/btx065

By:

Pappalardo, Morena;
Reddin, Ian G.;
Cantoni, Diego;
Rossman, Jeremy S.;
Michaelis, Martin;
Wass, Mark N.

Publication type:

Article