Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 12

Results: 31

MotifNet: a web-server for network motif analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1907, doi. 10.1093/bioinformatics/btx056

By:

Smoly, Ilan Y.;
Lerman, Eugene;
Ziv-Ukelson, Michal;
Yeger-Lotem, Esti

Publication type:

Article

PMAnalyzer: a new web interface for bacterial growth curve analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1905, doi. 10.1093/bioinformatics/btx084

By:

Cuevas, Daniel A.;
Edwards, Robert A.

Publication type:

Article

sfinx: an R package for the elimination of false positives from affinity purification-mass spectrometry datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1902, doi. 10.1093/bioinformatics/btx076

By:

Titeca, Kevin;
Meysman, Pieter;
Laukens, Kris;
Martens, Lennart;
Tavernier, Jan;
Eyckerman, Sven

Publication type:

Article

VALORATE: fast and accurate log-rank test in balanced and unbalanced comparisons of survival curves and cancer genomics.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1900, doi. 10.1093/bioinformatics/btx080

By:

Treviño, Victor;
Tamez-Pena, Jose

Publication type:

Article

MBV: a method to solve sample mislabeling and detect technical bias in large combined genotype and sequencing assay datasets.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1895, doi. 10.1093/bioinformatics/btx074

By:

Fort, Alexandre;
Panousis, Nikolaos I.;
Garieri, Marco;
Antonarakis, Stylianos E.;
Lappalainen, Tuuli;
Dermitzakis, Emmanouil T.;
Delaneau, Olivier

Publication type:

Article

PatternMarkers & GWCoGAPS for novel data-driven biomarkers via whole transcriptome NMF.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1892, doi. 10.1093/bioinformatics/btx058

By:

Stein-O'Brien, Genevieve L.;
Carey, Jacob L.;
Wai Shing Lee;
Considine, Michael;
Favorov, Alexander V.;
Flam, Emily;
Guo, Theresa;
Sijia Li;
Marchionni, Luigi;
Sherman, Thomas;
Sivy, Shawn;
Gaykalova, Daria A.;
McKay, Ronald D.;
Ochs, Michael F.;
Colantuoni, Carlo;
Fertig, Elana J.

Publication type:

Article

FELLS: fast estimator of latent local structure.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1889, doi. 10.1093/bioinformatics/btx085

By:

Piovesan, Damiano;
Walsh, Ian;
Minervini, Giovanni;
Tosatto, Silvio C. E.

Publication type:

Article

Phyx: phylogenetic tools for unix.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1886, doi. 10.1093/bioinformatics/btx063

By:

Brown, Joseph W.;
Walker, Joseph F.;
Smith, Stephen A.

Publication type:

Article

DiagnoProt: a tool for discovery of new molecules by mass spectrometry.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1883, doi. 10.1093/bioinformatics/btx093

By:

R. F. Silva, André;
Lima, Diogo B.;
Leyva, Alejandro;
Duran, Rosario;
Batthyany, Carlos;
Aquino, Priscila F.;
Leal, Juliana C.;
Rodriguez, Jimmy E.;
Domont, Gilberto B.;
Santos, Marlon D. M.;
Chamot-Rooke, Julia;
Barbosa, Valmir C.;
Carvalho, Paulo C.

Publication type:

Article

cooccurNet: an R package for co-occurrence network construction and analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1881, doi. 10.1093/bioinformatics/btx062

By:

Yuanqiang Zou;
Zhiqiang Wu;
Lizong Deng;
Aiping Wu;
Fan Wu;
Kenli Li;
Taijiao Jiang;
Yousong Peng

Publication type:

Article

Dscam1 web server: online prediction of Dscam1 self- and hetero-affinity.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1879, doi. 10.1093/bioinformatics/btx039

By:

Marini, Simone;
Nazzicari, Nelson;
Biscarini, Filippo;
Guang-Zhong Wang

Publication type:

Article

Simulome: a genome sequence and variant simulator.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1876, doi. 10.1093/bioinformatics/btx091

By:

Price, Adam;
Gibas, Cynthia

Publication type:

Article

Binning_refiner: improving genome bins through the combination of different binning programs.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1873, doi. 10.1093/bioinformatics/btx086

By:

Wei-Zhi Song;
Thomas, Torsten

Publication type:

Article

GLINT: a user-friendly toolset for the analysis of high-throughput DNA-methylation array data.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1870, doi. 10.1093/bioinformatics/btx059

By:

Rahmani, Elior;
Yedidim, Reut;
Shenhav, Liat;
Schweiger, Regev;
Weissbrod, Omer;
Zaitlen, Noah;
Halperin, Eran

Publication type:

Article

cyvcf2: fast, flexible variant analysis with Python.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1867, doi. 10.1093/bioinformatics/btx057

By:

Pedersen, Brent S.;
Quinlan, Aaron R.

Publication type:

Article

Bayesian network-response regression.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1859, doi. 10.1093/bioinformatics/btx050

By:

Lu Wang;
Durante, Daniele;
Jung, Rex E.;
Dunson, David B.

Publication type:

Article

nala: text mining natural language mutation mentions.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1852, doi. 10.1093/bioinformatics/btx083

By:

Cejuela, Juan Miguel;
Bojchevski, Aleksandar;
Uhlig, Carsten;
Bekmukhametov, Rustem;
Karn, Sanjeev Kumar;
Mahmuti, Shpend;
Baghudana, Ashish;
Dubey, Ankit;
Satagopam, Venkata P.;
Rost, Burkhard

Publication type:

Article

Benchmarking substrate-based kinase activity inference using phosphoproteomic data.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1845, doi. 10.1093/bioinformatics/btx082

By:

Hernandez-Armenta, Claudia;
Ochoa, David;
Gonçalves, Emanuel;
Saez-Rodriguez, Julio;
Beltrao, Pedro

Publication type:

Article

RelExplain--integrating data and networks to explain biological processes.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1837, doi. 10.1093/bioinformatics/btx060

By:

Berchtold, Evi;
Csaba, Gergely;
Zimmer, Ralf

Publication type:

Article

AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1829, doi. 10.1093/bioinformatics/btx029

By:

Biaobin Jiang;
Kloster, Kyle;
Gleich, David F.;
Gribskov, Michael

Publication type:

Article

Genome-wide genetic heterogeneity discovery with categorical covariates.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1820, doi. 10.1093/bioinformatics/btx071

By:

Llinares-López, Felipe;
Papaxanthos, Laetitia;
Bodenham, Dean;
Roqueiro, Damian;
Investigators, COPDGene;
Borgwardt, Karsten

Publication type:

Article

Statistical database analysis of the role of loop dynamics for protein-protein complex formation and allostery.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1814, doi. 10.1093/bioinformatics/btx070

By:

Yina Gu;
Da-Wei Li;
Brüschweiler, Rafael

Publication type:

Article

IRaPPA: information retrieval based integration of biophysical models for protein assembly selection.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1806, doi. 10.1093/bioinformatics/btx068

By:

Moal, Iain H.;
Barradas-Bautista, Didier;
Jiménez-García, Brian;
Torchala, Mieczyslaw;
van der Velde, Arjan;
Vreven, Thom;
Zhiping Weng;
Bates, Paul A.;
Fernández-Recio, Juan

Publication type:

Article

Adaptive MCMC in Bayesian phylogenetics: an application to analyzing partitioned data in BEAST.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1798, doi. 10.1093/bioinformatics/btx088

By:

Baele, Guy;
Lemey, Philippe;
Rambaut, Andrew;
Suchard, Marc A.

Publication type:

Article

STELLS2: fast and accurate coalescent-based maximum likelihood inference of species trees from gene tree topologies.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1789, doi. 10.1093/bioinformatics/btx079

By:

Jingwen Pei;
Yufeng Wu

Publication type:

Article

Kollector: transcript-informed, targeted de novo assembly of gene loci.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1782, doi. 10.1093/bioinformatics/btx078

By:

Kucuk, Erdi;
Chu, Justin;
Vandervalk, Benjamin P.;
Hammond, S. Austin;
Warren, René L.;
Birol, Inanc

Publication type:

Article

PhosphoPICK-SNP: quantifying the effect of amino acid variants on protein phosphorylation.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1773, doi. 10.1093/bioinformatics/btx072

By:

Patrick, Ralph;
Kobe, Bostjan;
Kim-Anh Lê Cao;
Bodén, Mikael

Publication type:

Article

pETM: a penalized Exponential Tilt Model for analysis of correlated high-dimensional DNA methylation data.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1765, doi. 10.1093/bioinformatics/btx064

By:

Hokeun Sun;
Ya Wang;
Yong Chen;
Yun Li;
Shuang Wang

Publication type:

Article

Accurate prediction of human essential genes using only nucleotide composition and association information.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1758, doi. 10.1093/bioinformatics/btx055

By:

Feng-Biao Guo;
Chuan Dong;
Hong-Li Hua;
Shuo Liu;
Hao Luo;
Hong-Wan Zhang;
Yan-Ting Jin;
Kai-Yue Zhang

Publication type:

Article

HIPred: an integrative approach to predicting haploinsufficient genes.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1751, doi. 10.1093/bioinformatics/btx028

By:

Shihab, Hashem A.;
Rogers, Mark F.;
Campbell, Colin;
Gaunt, Tom R.

Publication type:

Article

OncoSimulR: genetic simulation with arbitrary epistasis and mutator genes in asexual populations.

Published in:

Bioinformatics, 2017, v. 33, n. 12, p. 1198, doi. 10.1093/bioinformatics/btx077

By:

Diaz-Uriarte, Ramon

Publication type:

Article