Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 10

Results: 28

miRmine: a database of human miRNA expression profiles.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1554, doi. 10.1093/bioinformatics/btx019

By:

Panwar, Bharat;
Omenn, Gilbert S.;
Yuanfang Guan

Publication type:

Article

PALADIN: protein alignment for functional profiling whole metagenome shotgun data.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1473, doi. 10.1093/bioinformatics/btx021

By:

Westbrook, Anthony;
Ramsdell, Jordan;
Schuelke, Taruna;
Normington, Louisa;
Bergeron, R. Daniel;
Thomas, W. Kelley;
MacManes, Matthew D.

Publication type:

Article

NetLand: quantitative modeling and visualization of Waddington’s epigenetic landscape using probabilistic potential.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1583, doi. 10.1093/bioinformatics/btx022

By:

Jing Guo;
Feng Lin;
Xiaomeng Zhang;
Tanavde, Vivek;
Jie Zheng

Publication type:

Article

Large-scale 16S gene assembly using metagenomics shotgun sequences.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1447, doi. 10.1093/bioinformatics/btx018

By:

Feng Zeng;
Zicheng Wang;
Ying Wang;
Jizhong Zhou;
Ting Chen

Publication type:

Article

‘COV’COP’ allows to detect CNVs responsible for inherited diseases among amplicons sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1586, doi. 10.1093/bioinformatics/btx017

By:

Derouault, P.;
Parfait, B.;
Moulinas, R.;
Barrot, C.-C.;
Sturtz, F.;
Merillou, S.;
Lia, A.-S.

Publication type:

Article

annoPeak: a web application to annotate and visualize peaks from ChIP-seq/ChIP-exo-seq.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1570, doi. 10.1093/bioinformatics/btx016

By:

Xing Tang;
Srivastava, Arunima;
Huayang Liu;
Machiraju, Raghu;
Kun Huang;
Leone, Gustavo

Publication type:

Article

Correlated mutations select misfolded from properly folded proteins.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1497, doi. 10.1093/bioinformatics/btx013

By:

Wozniak, P. P.;
Vriend, G.;
Kotulska, M.

Publication type:

Article

Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1545, doi. 10.1093/bioinformatics/btx012

By:

Basu, Sumanta;
Duren, William;
Evans, Charles R.;
Burant, Charles F.;
Michailidis, George;
Karnovsky, Alla

Publication type:

Article

VCF-kit: assorted utilities for the variant call format.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1581, doi. 10.1093/bioinformatics/btx011

By:

Cook, Daniel E.;
Andersen, Erik C.

Publication type:

Article

FASTdoop: a versatile and efficient library for the input of FASTA and FASTQ files for MapReduce Hadoop bioinformatics applications.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1575, doi. 10.1093/bioinformatics/btx010

By:

Petrillo, Umberto Ferraro;
Roscigno, Gianluca;
Cattaneo, Giuseppe;
Giancarlo, Raffaele

Publication type:

Article

DeuteRater: a tool for quantifying peptide isotope precision and kinetic proteomics.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1514, doi. 10.1093/bioinformatics/btx009

By:

Naylor, Bradley C.;
Porter, Michael T.;
Wilson, Elise;
Herring, Adam;
Lofthouse, Spencer;
Hannemann, Austin;
Piccolo, Stephen R.;
Rockwood, Alan L.;
Price, John C.

Publication type:

Article

GWAR: robust analysis and meta-analysis of genome-wide association studies.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1521, doi. 10.1093/bioinformatics/btx008

By:

Dimou, Niki L.;
Tsirigos, Konstantinos D.;
Elofsson, Arne;
Bagos, Pantelis G.

Publication type:

Article

ASCIIGenome: a command line genome browser for console terminals.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1568, doi. 10.1093/bioinformatics/btx007

By:

Beraldi, Dario

Publication type:

Article

A DNA intercalation methodology for an efficient prediction of ligand binding pose and energetics.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1488, doi. 10.1093/bioinformatics/btx006

By:

Soni, Anjali;
Khurana, Pooja;
Singh, Tanya;
Jayaram, B.

Publication type:

Article

Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1479, doi. 10.1093/bioinformatics/btx005

By:

Qingzhen Hou;
De Geest, Paul F. G.;
Vranken, Wim F.;
Heringa, Jaap;
Feenstra, K. Anton

Publication type:

Article

The JWS online simulation database.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1589, doi. 10.1093/bioinformatics/btw831

By:

Peters, Martin;
Eicher, Johann J.;
van Niekerk, David D.;
Waltemath, Dagmar;
Snoep, Jacky L.

Publication type:

Article

SigMod: an exact and efficient method to identify a strongly interconnected disease-associated module in a gene network.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1536, doi. 10.1093/bioinformatics/btx004

By:

Liu, Yuanlong;
Brossard, Myriam;
Roqueiro, Damian;
Margaritte-Jeannin, Patricia;
Sarnowski, Chloé;
Bouzigon, Emmanuelle;
Demenais, Florence

Publication type:

Article

MetaPlotR: a Perl/R pipeline for plotting metagenes of nucleotide modifications and other transcriptomic sites.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1563, doi. 10.1093/bioinformatics/btx002

By:

Olarerin-George, Anthony O.;
Jaffrey, Samie R.

Publication type:

Article

AFRESh: an adaptive framework for compression of reads and assembled sequences with random access functionality.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1464, doi. 10.1093/bioinformatics/btx001

By:

Paridaens, Tom;
Van Wallendael, Glenn;
De Neve, Wesley;
Lambert, Peter

Publication type:

Article

Better diagnostic signatures from RNAseq data through use of auxiliary co-data.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1572, doi. 10.1093/bioinformatics/btw837

By:

Novianti, Putri W.;
Snoek, Barbara C.;
Wilting, Saskia M.;
van de Wiel, Mark A.

Publication type:

Article

Powerful differential expression analysis incorporating network topology for next-generation sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1505, doi. 10.1093/bioinformatics/btw833

By:

Dona, Malathi S. I.;
Prendergast, Luke A.;
Mathivanan, Suresh;
Keerthikumar, Shivakumar;
Salim, Agus

Publication type:

Article

KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1565, doi. 10.1093/bioinformatics/btx003

By:

Hastreiter, Maximilian;
Jeske, Tim;
Hoser, Jonathan;
Kluge, Michael;
Ahomaa, Kaarin;
Friedl, Marie-Sophie;
Kopetzky, Sebastian J.;
Quell, Jan-Dominik;
Mewes, H.-Werner;
Küffner, Robert

Publication type:

Article

Introducing COCOS: codon consequence scanner for annotating reading frame changes induced by stop-lost and frame shift variants.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1561, doi. 10.1093/bioinformatics/btw820

By:

Butkiewicz, Mariusz;
Haines, Jonathan L.;
Bush, William S.

Publication type:

Article

ProQ3D: improved model quality assessments using deep learning.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1578, doi. 10.1093/bioinformatics/btw819

By:

Uziela, Karolis;
Menéndez Hurtado, David;
Nanjiang Shu;
Wallner, Björn;
Elofsson, Arne

Publication type:

Article

LncRNA/DNA binding analysis reveals losses and gains and lineage specificity of genomic imprinting in mammals.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1431, doi. 10.1093/bioinformatics/btw818

By:

Haihua Liu;
Xiaoxiao Shang;
Hao Zhu

Publication type:

Article

High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1437, doi. 10.1093/bioinformatics/btw799

By:

Majoros, William H.;
Campbell, Michael S.;
Holt, Carson;
DeNardo, Erin K.;
Ware, Doreen;
Allen, Andrew S.;
Yandell, Mark;
Reddy, Timothy E.

Publication type:

Article

Inference of cellular level signaling networks using single-cell gene expression data in Caenorhabditis elegans reveals mechanisms of cell fate specification.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1528, doi. 10.1093/bioinformatics/btw796

By:

Xiao-Tai Huang;
Yuan Zhu;
Lai Hang Leanne Chan;
Zhongying Zhao;
Hong Yan

Publication type:

Article

Computational prediction of species-specific malonylation sites via enhanced characteristic strategy.

Published in:

Bioinformatics, 2017, v. 33, n. 10, p. 1457, doi. 10.1093/bioinformatics/btw755

By:

Li-NaWang;
Shao-Ping Shi;
Hao-Dong Xu;
Ping-Ping Wen;
Jian-Ding Qiu

Publication type:

Article