Works matching IS 13674803 AND DT 2017 AND VI 33 AND IP 1

Results: 28

A novel method for predicting activity of cis-regulatory modules, based on a diverse training set.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 1, doi. 10.1093/bioinformatics/btw552

By:

Wei Yang;
Sinha, Saurabh

Publication type:

Article

PseKRAAC: a flexible web server for generating pseudo K-tuple reduced amino acids composition.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 122, doi. 10.1093/bioinformatics/btw564

By:

Yongchun Zuo;
Yuan Li;
Yingli Chen;
Guangpeng Li;
Zhenhe Yan;
Lei Yang

Publication type:

Article

RiboDiff: detecting changes of mRNA translation efficiency from ribosome footprints.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 139, doi. 10.1093/bioinformatics/btw585

By:

Yi Zhong;
Karaletsos, Theofanis;
Drewe, Philipp;
Sreedharan, Vipin T.;
Kuo, David;
Singh, Kamini;
Wendel, Hans-Guido;
Rätsch, Gunnar

Publication type:

Article

HAPRAP: a haplotype-based iterative method for statistical fine mapping using GWAS summary statistics.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 79, doi. 10.1093/bioinformatics/btw565

By:

Jie Zheng;
Rodriguez, Santiago;
Laurin, Charles;
Baird, Denis;
Trela-Larsen, Lea;
Erzurumluoglu, Mesut A.;
Yi Zheng;
White, Jon;
Giambartolomei, Claudia;
Zabaneh, Delilah;
Morris, Richard;
Kumari, Meena;
Casas, Juan P.;
Hingorani, Aroon D.

Publication type:

Article

DAPAR & ProStaR: software to perform statistical analyses in quantitative discovery proteomics.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 135, doi. 10.1093/bioinformatics/btw580

By:

Wieczorek, Samuel;
Combes, Florence;
Lazar, Cosmin;
Gianetto, Quentin Giai;
Gatto, Laurent;
Dorffer, Alexia;
Hesse, Anne-Marie;
Couté, Yohann;
Ferro, Myriam;
Bruley, Christophe;
Burger, Thomas

Publication type:

Article

Multivariate two-part statistics for analysis of correlated mass spectrometry data from multiple biological specimens.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 17, doi. 10.1093/bioinformatics/btw578

By:

Taylor, Sandra L.;
Ruhaak, L. Renee;
Weiss, Robert H.;
Kelly, Karen;
Kyoungmi Kim

Publication type:

Article

Corrigendum.

Published in:: 2017
Publication type:: Correction Notice

Precrec: fast and accurate precision--recall and ROC curve calculations in R.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 145, doi. 10.1093/bioinformatics/btw570

By:

Takaya Saito;
Rehmsmeier, Marc

Publication type:

Article

Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 95, doi. 10.1093/bioinformatics/btw566

By:

Marín de Mas, Igor;
Fanchon, Eric;
Papp, Balázs;
Kalko, Susana;
Roca, Josep;
Cascante, Marta

Publication type:

Article

iRSpot-EL: identify recombination spots with an ensemble learning approach.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 35, doi. 10.1093/bioinformatics/btw539

By:

Bin Liu;
Shanyi Wang;
Ren Long;
Kuo-Chen Chou

Publication type:

Article

OntoBrowser: a collaborative tool for curation of ontologies by subject matter experts.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 148, doi. 10.1093/bioinformatics/btw579

By:

Ravagli, Carlo;
Pognan, Francois;
Marc, Philippe

Publication type:

Article

Verdant: automated annotation, alignment and phylogenetic analysis of whole chloroplast genomes.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 130, doi. 10.1093/bioinformatics/btw583

By:

McKain, Michael R.;
Hartsock, Ryan H.;
Wohl, Molly M.;
Kellogg, Elizabeth A.

Publication type:

Article

PDB2CD: a web-based application for the generation of circular dichroism spectra from protein atomic coordinates.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 56, doi. 10.1093/bioinformatics/btw554

By:

Mavridis, Lazaros;
Janes, Robert W.

Publication type:

Article

signeR: an empirical Bayesian approach to mutational signature discovery.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 8, doi. 10.1093/bioinformatics/btw572

By:

Rosales, Rafael A.;
Drummond, Rodrigo D.;
Valieris, Renan;
Dias-Neto, Emmanuel;
da Silva, Israel T.

Publication type:

Article

Gene- and pathway-based association tests for multiple traits with GWAS summary statistics.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 64, doi. 10.1093/bioinformatics/btw577

By:

Il-Youp Kwak;
Wei Pan

Publication type:

Article

PHYLOViZ 2.0: providing scalable data integration and visualization for multiple phylogenetic inference methods.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 128, doi. 10.1093/bioinformatics/btw582

By:

Nascimento, Marta;
Sousa, Adriano;
Ramirez, Mário;
Francisco, Alexandre P.;
Carriço, João A.;
Vaz, Cátia

Publication type:

Article

SiNVICT: ultra-sensitive detection of single nucleotide variants and indels in circulating tumour DNA.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 26, doi. 10.1093/bioinformatics/btw536

By:

Kockan, Can;
Hach, Faraz;
Sarrafi, Iman;
Bell, Robert H.;
McConeghy, Brian;
Beja, Kevin;
Haegert, Anne;
Wyatt, Alexander W.;
Volik, Stanislav V.;
Kim N. Chi;
Collins, Colin C.;
Sahinalp, S. Cenk

Publication type:

Article

Assessment of cancer and virus antigens for cross-reactivity in human tissues.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 104, doi. 10.1093/bioinformatics/btw567

By:

Jaravine, Victor;
Raffegerst, Silke;
Schendel, Dolores J.;
Frishman, Dmitrij

Publication type:

Article

A likelihood ratio-based method to predict exact pedigrees for complex families from next-generation sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 72, doi. 10.1093/bioinformatics/btw550

By:

Heinrich, Verena;
Kamphans, Tom;
Mundlos, Stefan;
Robinson, Peter N.;
Krawitz, Peter M.

Publication type:

Article

Prediction of nucleosome positioning by the incorporation of frequencies and distributions of three different nucleotide segment lengths into a general pseudo k-tuple nucleotide composition.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 42, doi. 10.1093/bioinformatics/btw562

By:

Awazu, Akinori

Publication type:

Article

BeReTa: a systematic method for identifying target transcriptional regulators to enhance microbial production of chemicals.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 87, doi. 10.1093/bioinformatics/btw557

By:

Minsuk Kim;
Gwanggyu Sun;
Dong-Yup Lee;
Byung-Gee Kim

Publication type:

Article

AKT: ancestry and kinship toolkit.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 142, doi. 10.1093/bioinformatics/btw576

By:

Arthur, Rudy;
Schulz-Trieglaff, Ole;
Cox, Anthony J.;
O'Connell, Jared

Publication type:

Article

stringMLST: a fast k-mer based tool for multilocus sequence typing.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 119, doi. 10.1093/bioinformatics/btw586

By:

Gupta, Anuj;
Jordan, I. King;
Rishishwar, Lavanya

Publication type:

Article

MPRAnator: a web-based tool for the design of massively parallel reporter assay experiments.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 137, doi. 10.1093/bioinformatics/btw584

By:

Georgakopoulos-Soares, Ilias;
Jain, Naman;
Gray, Jesse M.;
Hemberg, Martin

Publication type:

Article

The OGCleaner: filtering false-positive homology clusters.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 125, doi. 10.1093/bioinformatics/btw571

By:

Fujimoto, M. Stanley;
Suvorov, Anton;
Jensen, Nicholas O.;
Clement, Mark J.;
Snell, Quinn;
Bybee, Seth M.

Publication type:

Article

Nanocall: an open source basecaller for Oxford Nanopore sequencing data.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 49, doi. 10.1093/bioinformatics/btw569

By:

David, Matei;
Dursi, L. J.;
Yao, Delia;
Boutros, Paul C.;
Simpson, Jared T.

Publication type:

Article

LncVar: a database of genetic variation associated with long non-coding genes.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 112, doi. 10.1093/bioinformatics/btw581

By:

Xiaowei Chen;
Yajing Hao;
Ya Cui;
Zhen Fan;
Shunmin He;
Jianjun Luo;
Runsheng Chen

Publication type:

Article

FATSLiM: a fast and robust software to analyze MD simulations of membranes.

Published in:

Bioinformatics, 2017, v. 33, n. 1, p. 133, doi. 10.1093/bioinformatics/btw563

By:

Buchoux, Sébastien

Publication type:

Article