Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 8

Results: 36

OfftargetFinder: a web tool for species-specific RNAi design.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1232, doi. 10.1093/bioinformatics/btv747

By:

Good, R. T.;
Varghese, T.;
Golz, J. F.;
Russell, D. A.;
Papanicolaou, A.;
Edwards, O.;
Robin, C.

Publication type:

Article

Computational identification of piRNA targets on mouse mRNAs.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1170, doi. 10.1093/bioinformatics/btv729

By:

Jiao Yuan;
Peng Zhang;
Ya Cui;
Jiajia Wang;
Skogerbø, Geir;
Da-Wei Huang;
Runsheng Chen;
Shunmin He

Publication type:

Article

CASSIS and SMIPS: promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1138, doi. 10.1093/bioinformatics/btv713

By:

Wolf, Thomas;
Shelest, Vladimir;
Nath, Neetika;
Shelest, Ekaterina

Publication type:

Article

FluxModeCalculator: an efficient tool for large-scale flux mode computation.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1265, doi. 10.1093/bioinformatics/btv742

By:

van Klinken, Jan Bert;
van Dijk, Ko Willems

Publication type:

Article

Foldalign 2.5: multithreaded implementation for pairwise structural RNA alignment.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1238, doi. 10.1093/bioinformatics/btv748

By:

Sundfeld, Daniel;
Havgaard, Jakob H.;
de Melo, Alba C. M. A.;
Gorodkin, Jan

Publication type:

Article

PharmacoGx: an R package for analysis of large pharmacogenomic datasets.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1244, doi. 10.1093/bioinformatics/btv723

By:

Smirnov, Petr;
Safikhani, Zhaleh;
El-Hachem, Nehme;
Dong Wang;
She, Adrian;
Olsen, Catharina;
Freeman, Mark;
Selby, Heather;
Gendoo, Deena M. A.;
Grossmann, Patrick;
Beck, Andrew H.;
Aerts, Hugo J. W. L.;
Lupien, Mathieu;
Goldenberg, Anna;
Haibe-Kains, Benjamin

Publication type:

Article

Hierarchical block matrices as efficient representations of chromosome topologies and their application for 3C data integration.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1121, doi. 10.1093/bioinformatics/btv736

By:

Shavit, Yoli;
Walker, Barnabas James;
Lio, Pietro

Publication type:

Article

Improved topology prediction using the terminal hydrophobic helices rule.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1158, doi. 10.1093/bioinformatics/btv709

By:

Peters, Christoph;
Tsirigos, Konstantinos D.;
Nanjiang Shu;
Elofsson, Arne

Publication type:

Article

Extending gene ontology with gene association networks.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1185, doi. 10.1093/bioinformatics/btv712

By:

Jiajie Peng;
Tao Wang;
Jixuan Wang;
Yadong Wang;
Jin Chen

Publication type:

Article

INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1229, doi. 10.1093/bioinformatics/btv726

By:

Parra, R. Gonzalo;
Rohr, Cristian O.;
Koile, Daniel;
Perez-Castro, Carolina;
Yankilevich, Patricio

Publication type:

Article

SpotCaliper: fast wavelet-based spot detection with accurate size estimation.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1278, doi. 10.1093/bioinformatics/btv728

By:

Püspöki, Zsuzsanna;
Sage, Daniel;
Ward, John Paul;
Unser, Michael

Publication type:

Article

Prediction of the permeability of neutral drugs inferred from their solvation properties.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1163, doi. 10.1093/bioinformatics/btv725

By:

Milanetti, Edoardo;
Raimondo, Domenico;
Tramontano, Anna

Publication type:

Article

Fitchi: haplotype genealogy graphs based on the Fitch algorithm.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1250, doi. 10.1093/bioinformatics/btv717

By:

Matschiner, Michael

Publication type:

Article

CytoGEDEVO--global alignment of biological networks with Cytoscape.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1259, doi. 10.1093/bioinformatics/btv732

By:

Malek, Maximilian;
Ibragimov, Rashid;
Albrecht, Mario;
Baumbach, Jan

Publication type:

Article

rcellminer: exploring molecular profiles and drug response of the NCI-60 cell lines in R.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1272, doi. 10.1093/bioinformatics/btv701

By:

Luna, Augustin;
Rajapakse, Vinodh N.;
Sousa, Fabricio G.;
Jianjiong Gao;
Schultz, Nikolaus;
Varma, Sudhir;
Reinhold, William;
Sander, Chris;
Pommier, Yves

Publication type:

Article

CG2AA: backmapping protein coarse-grained structures.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1235, doi. 10.1093/bioinformatics/btv740

By:

Lombardi, Leandro E.;
Martı, Marcelo A.;
Capece, Luciana

Publication type:

Article

Joint detection of copy number variations in parent-offspring trios.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1130, doi. 10.1093/bioinformatics/btv707

By:

Yongzhuang Liu;
Jian Liu;
Jianguo Lu;
Jiajie Peng;
Liran Juan;
Xiaolin Zhu;
Bingshan Li;
Yadong Wang

Publication type:

Article

Adaptive gene- and pathway-trait association testing with GWAS summary statistics.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1178, doi. 10.1093/bioinformatics/btv719

By:

Kwak, Il-Youp;
Wei Pan

Publication type:

Article

NBSPred: a support vector machine-based high-throughput pipeline for plant resistance protein NBSLRR prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1223, doi. 10.1093/bioinformatics/btv714

By:

Kushwaha, Sandeep K.;
Chauhan, Pallavi;
Hedlund, Katarina;
Ahrén, Dag

Publication type:

Article

OMPPM: online multiple palindrome pattern matching.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1151, doi. 10.1093/bioinformatics/btv738

By:

Hwee Kim;
Yo-Sub Han

Publication type:

Article

FuMa: reporting overlap in RNA-seq detected fusion genes.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1226, doi. 10.1093/bioinformatics/btv721

By:

Hoogstrate, Youri;
Böttcher, René;
Hiltemann, Saskia;
van der Spek, Peter J.;
Jenster, Guido;
Stubbs, Andrew P.

Publication type:

Article

Fast integration-based prediction bands for ordinary differential equation models.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1204, doi. 10.1093/bioinformatics/btv743

By:

Hass, Helge;
Kreutz, Clemens;
Timmer, Jens;
Kaschek, Daniel

Publication type:

Article

MCAST: scanning for cis-regulatory motif clusters.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1217, doi. 10.1093/bioinformatics/btv750

By:

Grant, Charles E.;
Johnson, James;
Bailey, Timothy L.;
Noble, William Stafford

Publication type:

Article

MSAcquisitionSimulator: data-dependent acquisition simulator for LC-MS shotgun proteomics.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1269, doi. 10.1093/bioinformatics/btv745

By:

Goldfarb, Dennis;
Wei Wang;
Major, Michael B.

Publication type:

Article

Fuse: multiple network alignment via data fusion.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1195, doi. 10.1093/bioinformatics/btv731

By:

Gligorijević, Vladimir;
Malod-Dognin, Noël;
Pržulj, Nataša

Publication type:

Article

BioFVM: an efficient, parallelized diffusive transport solver for 3-D biological simulations.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1256, doi. 10.1093/bioinformatics/btv730

By:

Ghaffarizadeh, Ahmadreza;
Friedman, Samuel H.;
Macklin, Paul

Publication type:

Article

DeNovo: virus-host sequence-based protein-protein interaction prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1144, doi. 10.1093/bioinformatics/btv737

By:

Eid, Fatma-Elzahraa;
El Hefnawi, Mahmoud;
Heath, Lenwood S.

Publication type:

Article

qsubsec: a lightweight template system for defining sun grid engine workflows.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1267, doi. 10.1093/bioinformatics/btv698

By:

Droop, Alastair P.

Publication type:

Article

Sequence database versioning for command line and Galaxy bioinformatics servers.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1275, doi. 10.1093/bioinformatics/btv724

By:

Dooley, Damion M.;
Petkau, Aaron J.;
Van Domselaar, Gary;
Hsiao, William W. L.

Publication type:

Article

DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1211, doi. 10.1093/bioinformatics/btv735

By:

Tsu-Pei Chiu;
Comoglio, Federico;
Tianyin Zhou;
Lin Yang;
Paro, Renato;
Rohs, Remo

Publication type:

Article

Manta: rapid detection of structural variants and indels for germline and cancer sequencing applications.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1220, doi. 10.1093/bioinformatics/btv710

By:

Xiaoyu Chen;
Schulz-Trieglaff, Ole;
Shaw, Richard;
Barnes, Bret;
Schlesinger, Felix;
Källberg, Morten;
Cox, Anthony J.;
Kruglyak, Semyon;
Saunders, Christopher T.

Publication type:

Article

traseR: an R package for performing trait-associated SNP enrichment analysis in genomic intervals.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1214, doi. 10.1093/bioinformatics/btv741

By:

Li Chen;
Qin, Zhaohui S.

Publication type:

Article

HitWalker2: visual analytics for precision medicine and beyond.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1253, doi. 10.1093/bioinformatics/btv739

By:

Bottomly, Daniel;
McWeeney, Shannon K.;
Wilmot, Beth

Publication type:

Article

Integrating, summarizing and visualizing GWAS-hits and human diversity with DANCE (Disease-ANCEstry networks).

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1247, doi. 10.1093/bioinformatics/btv708

By:

Araújo, Gilderlanio S.;
Lima, Lucas Henrique C.;
Schneider, Silvana;
Leal, Thiago P.;
da Silva, Ana Paula C.;
de Melo, Pedro O. S. Vaz;
Tarazona-Santos, Eduardo;
Scliar, Marília O.;
Rodrigues, Maíra R.

Publication type:

Article

destiny: diffusion maps for large-scale single-cell data in R.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1241, doi. 10.1093/bioinformatics/btv715

By:

Angerer, Philipp;
Haghverdi, Laleh;
Büttner, Maren;
Theis, Fabian J.;
Marr, Carsten;
Buettner, Florian

Publication type:

Article

PaxtoolsR: pathway analysis in R using Pathway Commons.

Published in:

Bioinformatics, 2016, v. 32, n. 8, p. 1262, doi. 10.1093/bioinformatics/btv733

By:

Luna, Augustin;
Babur, Özgün;
Aksoy, Bülent Arman;
Demir, Emek;
Sander, Chris

Publication type:

Article