Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 6

Results: 27

WormExp: a web-based application for a Caenorhabditis elegans-specific gene expression enrichment analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 943, doi. 10.1093/bioinformatics/btv667

By:

Wentao Yang;
Dierking, Katja;
Schulenburg, Hinrich

Publication type:

Article

BioPartsBuilder: a synthetic biology tool for combinatorial assembly of biological parts.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 937, doi. 10.1093/bioinformatics/btv664

By:

Kun Yang;
Stracquadanio, Giovanni;
Jingchuan Luo;
Boeke, Jef D.;
Bader, Joel S.

Publication type:

Article

PAPA: a flexible tool for identifying pleiotropic pathways using genome-wide association study summaries.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 946, doi. 10.1093/bioinformatics/btv668

By:

Yan Wen;
Wenyu Wang;
Xiong Guo;
Feng Zhang

Publication type:

Article

Global copy number profiling of cancer genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 926, doi. 10.1093/bioinformatics/btv676

By:

Xuefeng Wang;
Mengjie Chen;
Xiaoqing Yu;
Pornputtapong, Natapol;
Hao Chen;
Zhang, Nancy R.;
Powers, R. Scott;
Krauthammer, Michael

Publication type:

Article

TCGA2STAT: simple TCGA data access for integrated statistical analysis in R.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 952, doi. 10.1093/bioinformatics/btv677

By:

Ying-Wooi Wan;
Allen, Genevera I.;
Zhandong Liu

Publication type:

Article

FoCuS-point: software for STED fluorescence correlation and time-gated single photon counting.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 958, doi. 10.1093/bioinformatics/btv687

By:

Waithe, Dominic;
Clausen, Mathias P.;
Sezgin, Erdinc;
Eggeling, Christian

Publication type:

Article

CHRONOS: a time-varying method for microRNA-mediated subpathway enrichment analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 884, doi. 10.1093/bioinformatics/btv673

By:

Vrahatis, Aristidis G.;
Dimitrakopoulou, Konstantina;
Balomenos, Panos;
Tsakalidis, Athanasios K.;
Bezerianos, Anastasios

Publication type:

Article

The intrinsic combinatorial organization and information theoretic content of a sequence are correlated to the DNA encoded nucleosome organization of eukaryotic genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 835, doi. 10.1093/bioinformatics/btv679

By:

Utro, Filippo;
Di Benedetto, Valeria;
Corona, Davide F. V.;
Giancarlo, Raffaele

Publication type:

Article

Optimal design of gene knockout experiments for gene regulatory network inference.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 875, doi. 10.1093/bioinformatics/btv672

By:

Minhaz Ud-Dean, S. M.;
Gunawan, Rudiyanto

Publication type:

Article

CDSfold: an algorithm for designing a proteincoding sequence with the most stable secondary structure.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 828, doi. 10.1093/bioinformatics/btv678

By:

Terai, Goro;
Satoshi Kamegai;
Kiyoshi Asai

Publication type:

Article

SomVarIUS: somatic variant identification from unpaired tissue samples.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 808, doi. 10.1093/bioinformatics/btv685

By:

Smith, Kyle S.;
Yadav, Vinod K.;
Shanshan Pei;
Pollyea, Daniel A.;
Jordan, Craig T.;
De, Subhajyoti

Publication type:

Article

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 929, doi. 10.1093/bioinformatics/btv681

By:

Richter, Michael;
Rosselló-Móra, Ramon;
Glöckner, Frank Oliver;
Peplies, Jörg

Publication type:

Article

Reliable ABC model choice via random forests.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 859, doi. 10.1093/bioinformatics/btv684

By:

Pudlo, Pierre;
Marin, Jean-Michel;
Estoup, Arnaud;
Cornuet, Jean-Marie;
Gautier, Mathieu;
Robert, Christian P.

Publication type:

Article

Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 893, doi. 10.1093/bioinformatics/btv680

By:

Pirkl, Martin;
Hand, Elisabeth;
Kube, Dieter;
Spang, Rainer

Publication type:

Article

CellTracker (not only) for dummies.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 955, doi. 10.1093/bioinformatics/btv686

By:

Piccinini, Filippo;
Kiss, Alexa;
Horvath, Peter

Publication type:

Article

Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 908, doi. 10.1093/bioinformatics/btv660

By:

Misirli, Goksel;
Cavaliere, Matteo;
Waites, William;
Pocock, Matthew;
Madsen, Curtis;
Gilfellon, Owen;
Honorato-Zimmer, Ricardo;
Zuliani, Paolo;
Danos, Vincent;
Wipat, Anil

Publication type:

Article

MIEC-SVM: automated pipeline for protein peptide/ligand interaction prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 940, doi. 10.1093/bioinformatics/btv666

By:

Nan Li;
Ainsworth, Richard I.;
Meixin Wu;
Bo Ding;
Wei Wang

Publication type:

Article

KMAD: knowledge-based multiple sequence alignment for intrinsically disordered proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 932, doi. 10.1093/bioinformatics/btv663

By:

Lange, Joanna;
Wyrwicz, Lucjan S.;
Vriend, Gert

Publication type:

Article

Automatic generation of bioinformatics tools for predicting protein–ligand binding sites.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 901, doi. 10.1093/bioinformatics/btv593

By:

Yusuke Komiyama;
Masaki Banno;
Kokoro Ueki;
Saad, Gul;
Kentaro Shimizu

Publication type:

Article

Prioritizing hypothesis tests for high throughput data.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 850, doi. 10.1093/bioinformatics/btv608

By:

Sangjin Kim;
Schliekelman, Paul

Publication type:

Article

Highly accurate sequence-based prediction of half-sphere exposures of amino acid residues in proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 843, doi. 10.1093/bioinformatics/btv665

By:

Heffernan, Rhys;
Dehzangi, Abdollah;
Lyons, James;
Paliwal, Kuldip;
Sharma, Alok;
Jihua Wang;
Sattar, Abdul;
Yaoqi Zhou;
Yuedong Yang

Publication type:

Article

Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 814, doi. 10.1093/bioinformatics/btv592

By:

Fox, Gearóid;
Sievers, Fabian;
Higgins, Desmond G.

Publication type:

Article

LocusExplorer: a user-friendly tool for integrated visualization of human genetic association data and biological annotations.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 949, doi. 10.1093/bioinformatics/btv690

By:

Dadaev, Tokhir;
Leongamornlert, Daniel A.;
Saunders, Edward J.;
Eeles, Rosalind;
Kote-Jarai, Zsofia

Publication type:

Article

Flexible data integration and curation using a graph-based approach.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 918, doi. 10.1093/bioinformatics/btv644

By:

Croset, Samuel;
Rupp, Joachim;
Romacker, Martin

Publication type:

Article

Uncovering multiloci-ordering by algebraic property of Laplacian matrix and its Fiedler vector.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 801, doi. 10.1093/bioinformatics/btv669

By:

Mookyung Cheon;
Choongrak Kim;
Iksoo Chang

Publication type:

Article

Metabolic network-guided binning of metagenomic sequence fragments.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 867, doi. 10.1093/bioinformatics/btv671

By:

Biggs, Matthew B.;
Papin, Jason A.

Publication type:

Article

Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 6, p. 821, doi. 10.1093/bioinformatics/btv674

By:

Audain, Enrique;
Ramos, Yassel;
Hermjakob, Henning;
Flower, Darren R.;
Perez-Riverol, Yasset

Publication type:

Article