Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 4

Results: 33

GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 490, doi. 10.1093/bioinformatics/btv565

By:

Haoyang Zeng;
Tatsunori Hashimoto;
Kang, Daniel D.;
Gifford, David K.

Publication type:

Article

SeqSIMLA2_exact: simulate multiple disease sites in large pedigrees with given disease status for diseases with low prevalence.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 557, doi. 10.1093/bioinformatics/btv626

By:

Po-Ju Yao;
Ren-Hua Chung

Publication type:

Article

MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 605, doi. 10.1093/bioinformatics/btv638

By:

Yu-Wei Wu;
Simmons, Blake A.;
Singer, Steven W.

Publication type:

Article

caRpools: an R package for exploratory data analysis and documentation of pooled CRISPR/Cas9 screens.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 632, doi. 10.1093/bioinformatics/btv617

By:

Winter, Jan;
Breinig, Marco;
Heigwer, Florian;
Brügemann, Dirk;
Leible, Svenja;
Pelz, Oliver;
Tianzuo Zhan;
Boutros, Michael

Publication type:

Article

PPIXpress: construction of condition-specific protein interaction networks based on transcript expression.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 571, doi. 10.1093/bioinformatics/btv620

By:

Will, Thorsten;
Helms, Volkhard

Publication type:

Article

DelPhiPKa web server: predicting pK<sub>a</sub> of proteins, RNAs and DNAs.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 614, doi. 10.1093/bioinformatics/btv607

By:

Lin Wang;
Min Zhang;
Alexov, Emil

Publication type:

Article

PDID: database of molecular-level putative protein-drug interactions in the structural human proteome.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 579, doi. 10.1093/bioinformatics/btv597

By:

Chen Wang;
Gang Hu;
Kui Wang;
Brylinski, Michal;
Lei Xie;
Kurgan, Lukasz

Publication type:

Article

Omokage search: shape similarity search service for biomolecular structures in both the PDB and EMDB.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 619, doi. 10.1093/bioinformatics/btv614

By:

Hirofumi Suzuki;
Takeshi Kawabata;
Haruki Nakamura

Publication type:

Article

PRIMUS: improving pedigree reconstruction using mitochondrial and Y haplotypes.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 596, doi. 10.1093/bioinformatics/btv618

By:

Staples, Jeffrey;
Ekunwe, Lynette;
Lange, Ethan;
Wilson, James G.;
Nickerson, Deborah A.;
Below, Jennifer E.

Publication type:

Article

LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 587, doi. 10.1093/bioinformatics/btv612

By:

Sheffield, Nathan C.;
Bock, Christoph

Publication type:

Article

Pycellerator: an arrow-based reaction-like modelling language for biological simulations.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 629, doi. 10.1093/bioinformatics/btv596

By:

Shapiro, Bruce E.;
Mjolsness, Eric

Publication type:

Article

Protael: protein data visualization library for the web.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 602, doi. 10.1093/bioinformatics/btv605

By:

Sedova, Mayya;
Jaroszewski, Lukasz;
Godzik, Adam

Publication type:

Article

An algorithm to detect and communicate the differences in computational models describing biological systems.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 563, doi. 10.1093/bioinformatics/btv484

By:

Scharm, Martin;
Wolkenhauer, Olaf;
Waltemath, Dagmar

Publication type:

Article

NMRe: a web server for NMR protein structure refinement with high-quality structure validation scores.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 611, doi. 10.1093/bioinformatics/btv595

By:

Hyojung Ryu;
GyuTae Lim;
Bong Hyun Sung;
Jinhyuk Lee

Publication type:

Article

MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mapping in multiple tissues.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 523, doi. 10.1093/bioinformatics/btv568

By:

Lewin, Alex;
Saadi, Habib;
Peters, James E.;
Moreno-Moral, Aida;
Lee, James C.;
Smith, Kenneth G. C.;
Petretto, Enrico;
Bottolo, Leonardo;
Richardson, Sylvia

Publication type:

Article

EMDomics: a robust and powerful method for the identification of genes differentially expressed between heterogeneous classes.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 533, doi. 10.1093/bioinformatics/btv634

By:

Nabavi, Sheida;
Schmolze, Daniel;
Maitituoheti, Mayinuer;
Malladi, Sadhika;
Beck, Andrew H.

Publication type:

Article

tcsBU: a tool to extend TCS network layout and visualization.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 627, doi. 10.1093/bioinformatics/btv636

By:

dos Santos, António Múrias;
Cabezas, Maria Pilar;
Tavares, Ana Isabel;
Xavier, Raquel;
Branco, Madalena

Publication type:

Article

GenoWAP: GWAS signal prioritization through integrated analysis of genomic functional annotation.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 542, doi. 10.1093/bioinformatics/btv610

By:

Qiongshi Lu;
Xinwei Yao;
Yiming Hu;
Hongyu Zhao

Publication type:

Article

BGT: efficient and flexible genotype query across many samples.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 590, doi. 10.1093/bioinformatics/btv613

By:

Heng Li

Publication type:

Article

funtooNorm: an R package for normalization of DNA methylation data when there are multiple cell or tissue types.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 593, doi. 10.1093/bioinformatics/btv615

By:

Klein, Kathleen Oros;
Grinek, Stepan;
Bernatsky, Sasha;
Bouchard, Luigi;
Ciampi, Antonio;
Colmegna, Ines;
Fortin, Jean-Philippe;
Long Gao;
Hivert, Marie-France;
Hudson, Marie;
Kobor, Michael S.;
Labbe, Aurelie;
MacIsaac, Julia L.;
Meaney, Michael J.;
Morin, Alexander M.;
O'Donnell, Kieran J.;
Pastinen, Tomi;
Van Ijzendoorn, Marinus H.;
Voisin, Gregory;
Greenwood, Celia M. T.

Publication type:

Article

Detecting dispersed duplications in high-throughput sequencing data using a database-free approach.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 505, doi. 10.1093/bioinformatics/btv621

By:

Kroon, M.;
Lameijer, E. W.;
Lakenberg, N.;
Hehir-Kwa, J. Y.;
Thung, D. T.;
Slagboom, P. E.;
Kok, J. N.;
Ye, K.

Publication type:

Article

DARA: a web server for rapid search of structural neighbours using solution small angle X-ray scattering data.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 616, doi. 10.1093/bioinformatics/btv611

By:

Kikhney, Alexey G.;
Panjkovich, Alejandro;
Sokolova, Anna V.;
Svergun, Dmitri I.

Publication type:

Article

Web-based Gene Pathogenicity Analysis (WGPA): a web platform to interpret gene pathogenicity from personal genome data.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 635, doi. 10.1093/bioinformatics/btv598

By:

Diaz-Montana, Juan J.;
Rackham, Owen J. L.;
Diaz-Diaz, Norberto;
Petretto, Enrico

Publication type:

Article

ParTIES: a toolbox for Paramecium interspersed DNA elimination studies.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 599, doi. 10.1093/bioinformatics/btv691

By:

Wilkes, Cyril Denby;
Arnaiz, Olivier;
Sperling, Linda

Publication type:

Article

ancGWAS: a post genome-wide association study method for interaction, pathway and ancestry analysis in homogeneous and admixed populations.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 549, doi. 10.1093/bioinformatics/btv619

By:

Chimusa, Emile R.;
Mbiyavanga, Mamana;
Mazandu, Gaston K.;
Mulder, Nicola J.

Publication type:

Article

SylvX: a viewer for phylogenetic tree reconciliations.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 608, doi. 10.1093/bioinformatics/btv625

By:

Chevenet, François;
Doyon, Jean-Philippe;
Scornavacca, Celine;
Jacox, Edwin;
Jousselin, Emmanuelle;
Berry, Vincent

Publication type:

Article

RVFam: an R package for rare variant association analysis with family data.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 624, doi. 10.1093/bioinformatics/btv609

By:

Ming-Huei Chen;
Qiong Yang

Publication type:

Article

IsoMIF Finder: online detection of binding site molecular interaction field similarities.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 621, doi. 10.1093/bioinformatics/btv616

By:

Chartier, Matthieu;
Adriansen, Etienne;
Najmanovich, Rafael

Publication type:

Article

Understanding the fabric of protein crystals: computational classification of biological interfaces and crystal contacts.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 481, doi. 10.1093/bioinformatics/btv622

By:

Capitani, Guido;
Duarte, Jose M.;
Baskaran, Kumaran;
Bliven, Spencer;
Somody, Joseph C.

Publication type:

Article

The minimum evolution problem is hard: a link between tree inference and graph clustering problems.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 518, doi. 10.1093/bioinformatics/btv623

By:

Bastkowski, Sarah;
Moulton, Vincent;
Spillner, Andreas;
Taoyang Wu

Publication type:

Article

openBIS ELN-LIMS: an open-source database for academic laboratories.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 638, doi. 10.1093/bioinformatics/btv606

By:

Barillari, Caterina;
Fuentes-Serna, Juan Mariano;
Ottoz, Diana S. M.;
Ramakrishnan, Chandrasekhar;
Rinn, Bernd;
Rudolf, Fabian

Publication type:

Article

Graphical pan-genome analysis with compressed suffix trees and the Burrows-Wheeler transform.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 497, doi. 10.1093/bioinformatics/btv603

By:

Baier, Uwe;
Beller, Timo;
Ohlebusch, Enno

Publication type:

Article

Gapped sequence alignment using artificial neural networks: application to the MHC class I system.

Published in:

Bioinformatics, 2016, v. 32, n. 4, p. 511, doi. 10.1093/bioinformatics/btv639

By:

Andreatta, Massimo;
Nielsen, Morten

Publication type:

Article