Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 22

Results: 31

Drug drug interaction extraction from biomedical literature using syntax convolutional neural network.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3444, doi. 10.1093/bioinformatics/btw486

By:

Zhehuan Zhao;
Zhihao Yang;
Ling Luo;
Hongfei Lin;
Jian Wang

Publication type:

Article

MSAViewer: interactive JavaScript visualization of multiple sequence alignments.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3501, doi. 10.1093/bioinformatics/btw474

By:

Yachdav, Guy;
Wilzbach, Sebastian;
Rauscher, Benedikt;
Sheridan, Robert;
Sillitoe, Ian;
Procter, James;
Lewis, Suzanna E.;
Rost, Burkhard;
Goldberg, Tatyana

Publication type:

Article

LEVER: software tools for segmentation, tracking and lineaging of proliferating cells.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3530, doi. 10.1093/bioinformatics/btw406

By:

Winter, Mark;
Mankowski, Walter;
Wait, Eric;
Temple, Sally;
Cohen, Andrew R.

Publication type:

Article

Detection of differentially methylated regions in whole genome bisulfite sequencing data using local Getis-Ord statistics.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3396, doi. 10.1093/bioinformatics/btw497

By:

Yalu Wen;
Fushun Chen;
Qingzheng Zhang;
Yan Zhuang;
Zhiguang Li

Publication type:

Article

MetaCoMET: a web platform for discovery and visualization of the core microbiome.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3469, doi. 10.1093/bioinformatics/btw507

By:

Yi Wang;
Ling Xu;
Gu, Yong Q.;
Coleman-Derr, Devin

Publication type:

Article

SSBD: a database of quantitative data of spatiotemporal dynamics of biological phenomena.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3471, doi. 10.1093/bioinformatics/btw417

By:

Yukako Tohsato;
Ho, Kenneth H. L.;
Koji Kyoda;
Shuichi Onami

Publication type:

Article

LAMPLINK: detection of statistically significant SNP combinations from GWAS data.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3513, doi. 10.1093/bioinformatics/btw418

By:

Aika Terada;
Ryo Yamada;
Koji Tsuda;
Jun Sese

Publication type:

Article

NCMine: Core-peripheral based functional module detection using near-clique mining.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3454, doi. 10.1093/bioinformatics/btw488

By:

Shu Tadaka;
Kengo Kinoshita

Publication type:

Article

BioPartsDB: a synthetic biology workflow web-application for education and research.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3519, doi. 10.1093/bioinformatics/btw394

By:

Stracquadanio, Giovanni;
Kun Yang;
Boeke, Jef D.;
Bader, Joel S.

Publication type:

Article

Online interactive analysis of protein structure ensembles with Bio3D-web.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3510, doi. 10.1093/bioinformatics/btw482

By:

Skjærven, Lars;
Jariwala, Shashank;
Xin-Qiu Yao;
Grant, Barry J.

Publication type:

Article

ReactPRED: a tool to predict and analyze biochemical reactions.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3522, doi. 10.1093/bioinformatics/btw491

By:

Sivakumar, Tadi Venkata;
Giri, Varun;
Jin Hwan Park;
Tae Yong Kim;
Bhaduri, Anirban

Publication type:

Article

VISUALGRAPHX: interactive graph visualization within Galaxy.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3525, doi. 10.1093/bioinformatics/btw414

By:

Schäfer, Richard A.;
Voß, Björn

Publication type:

Article

NRGC: a novel referential genome compression algorithm.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3405, doi. 10.1093/bioinformatics/btw505

By:

Saha, Subrata;
Rajasekaran, Sanguthevar

Publication type:

Article

PReFerSim: fast simulation of demography and selection under the Poisson Random Field model.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3516, doi. 10.1093/bioinformatics/btw478

By:

Ortega-Del Vecchyo, Diego;
Marsden, Clare D.;
Lohmueller, Kirk E.

Publication type:

Article

ntHash: recursive nucleotide hashing.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3492, doi. 10.1093/bioinformatics/btw397

By:

Mohamadi, Hamid;
Chu, Justin;
Vandervalk, Benjamin P.;
Birol, Inanc

Publication type:

Article

Variance adaptive shrinkage (vash): flexible empirical Bayes estimation of variances.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3428, doi. 10.1093/bioinformatics/btw483

By:

Mengyin Lu;
Stephens, Matthew

Publication type:

Article

MorphoLibJ: integrated library and plugins for mathematical morphology with ImageJ.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3532, doi. 10.1093/bioinformatics/btw413

By:

Legland, David;
Arganda-Carreras, Ignacio;
Andrey, Philippe

Publication type:

Article

Motif comparison based on similarity of binding affinity profiles.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3504, doi. 10.1093/bioinformatics/btw489

By:

Lambert, Samuel A.;
Albu, Mihai;
Hughes, Timothy R.;
Najafabadi, Hamed S.

Publication type:

Article

TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3495, doi. 10.1093/bioinformatics/btw398

By:

Qiang Kou;
Likun Xun;
Xiaowen Liu

Publication type:

Article

Simultaneous gene finding in multiple genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3388, doi. 10.1093/bioinformatics/btw494

By:

König, Stefanie;
Romoth, Lars W.;
Gerischer, Lizzy;
Stanke, Mario

Publication type:

Article

MEMHDX: an interactive tool to expedite the statistical validation and visualization of large HDX-MS datasets.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3413, doi. 10.1093/bioinformatics/btw420

By:

Hourdel, Véronique;
Volant, Stevenn;
O'Brien, Darragh P.;
Chenal, Alexandre;
Chamot-Rooke, Julia;
Dillies, Marie-Agnès;
Brier, Sèbastien

Publication type:

Article

Predicting G protein-coupled receptor downstream signaling by tissue expression.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3435, doi. 10.1093/bioinformatics/btw510

By:

Yun Hao;
Tatonetti, Nicholas P.

Publication type:

Article

Joint sparse canonical correlation analysis for detecting differential imaging genetics modules.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3480, doi. 10.1093/bioinformatics/btw485

By:

Jian Fang;
Dongdong Lin;
Schulz, S. Charles;
Zongben Xu;
Calhoun, Vince D.;
Yu-Ping Wang

Publication type:

Article

Estimating evolutionary rates using time-structured data: a general comparison of phylogenetic methods.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3375, doi. 10.1093/bioinformatics/btw421

By:

Duchêne, Sebastián;
Geoghegan, Jemma L.;
Holmes, Edward C.;
Ho, Simon Y. W.

Publication type:

Article

Excess positional mutual information predicts both local and allosteric mutations affecting beta lactamase drug resistance.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3420, doi. 10.1093/bioinformatics/btw492

By:

Cortina, George A.;
Kasson, Peter M.

Publication type:

Article

PcircRNA_finder: a software for circRNA prediction in plants.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3528, doi. 10.1093/bioinformatics/btw496

By:

Li Chen;
Yongyi Yu;
Xinchen Zhang;
Chen Liu;
Chuyu Ye;
Longjiang Fan

Publication type:

Article

WALT: fast and accurate read mapping for bisulfite sequencing.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3507, doi. 10.1093/bioinformatics/btw490

By:

Haifeng Chen;
Smith, Andrew D.;
Ting Chen

Publication type:

Article

sBWT: memory efficient implementation of the hardware-acceleration-friendly Schindler transform for the fast biological sequence mapping.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3498, doi. 10.1093/bioinformatics/btw419

By:

Chia-Hua Chang;
Min-Te Chou;
Yi-Chung Wu;
Ting-Wei Hong;
Yun-Lung Li;
Chia-Hsiang Yang;
Jui-Hung Hung

Publication type:

Article

NET-GE: a web-server for NETwork-based human gene enrichment.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3489, doi. 10.1093/bioinformatics/btw508

By:

Bovo, Samuele;
Di Lena, Pietro;
Martelli, Pier Luigi;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

An efficient method to estimate the optimum regularization parameter in RLDA.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3461, doi. 10.1093/bioinformatics/btw506

By:

Bakir, Daniyar;
James, Alex Pappachen;
Zollanvari, Amin

Publication type:

Article

plasmidSPAdes: assembling plasmids from whole genome sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 22, p. 3380, doi. 10.1093/bioinformatics/btw493

By:

Antipov, Dmitry;
Hartwick, Nolan;
Shen, Max;
Mikhail Raiko;
Lapidus, Alla;
Pevzner, Pavel A.

Publication type:

Article