Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 21

Results: 31

ChAsE: chromatin analysis and exploration tool.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3324, doi. 10.1093/bioinformatics/btw382

By:

Younesy, Hamid;
Nielsen, Cydney B.;
Lorincz, Matthew C.;
Jones, Steven J. M.;
Karimi, Mohammad M.;
Möller, Torsten

Publication type:

Article

Application of the MAFFT sequence alignment program to large data--reexamination of the usefulness of chained guide trees.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3246, doi. 10.1093/bioinformatics/btw412

By:

Yamada, Kazunori D.;
Kentaro Tomii;
Kazutaka Katoh

Publication type:

Article

Accounting for pairwise distance restraints in FFT-based protein--protein docking.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3342, doi. 10.1093/bioinformatics/btw306

By:

Bing Xia;
Vajda, Sandor;
Kozakov, Dima

Publication type:

Article

MetaCycle: an integrated R package to evaluate periodicity in large scale data.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3351, doi. 10.1093/bioinformatics/btw405

By:

Gang Wu;
Anafi, Ron C.;
Hughes, Michael E.;
Kornacker, Karl;
Hogenesch, John B.

Publication type:

Article

ConsPred: a rule-based (re-)annotation framework for prokaryotic genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3327, doi. 10.1093/bioinformatics/btw393

By:

Weinmaier, Thomas;
Platzer, Alexander;
Frank, Jeroen;
Hellinger, Hans-Jörg;
Tischler, Patrick;
Rattei, Thomas

Publication type:

Article

TwoPhaseInd: an R package for estimating gene--treatment interactions and discovering predictive markers in randomized clinical trials.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3348, doi. 10.1093/bioinformatics/btw391

By:

XiaoyuWang;
Dai, James Y.

Publication type:

Article

PyPanda: a Python package for gene regulatory network reconstruction.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3363, doi. 10.1093/bioinformatics/btw422

By:

van IJzendoorn, David G. P.;
Glass, Kimberly;
Quackenbush, John;
Kuijjer, Marieke L.

Publication type:

Article

samExploreR: exploring reproducibility and robustness of RNA-seq results based on SAM files.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3345, doi. 10.1093/bioinformatics/btw475

By:

Stupnikov, Alexey;
Tripathi, Shailesh;
de Matos Simoes, Ricardo;
Mc Art, Darragh;
Salto-Tellez, Manuel;
Glazko, Galina;
Dehmer, Matthias;
Emmert-Streib, Frank

Publication type:

Article

MIMEAnTo: profiling functional RNA in mutational interference mapping experiments.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3369, doi. 10.1093/bioinformatics/btw479

By:

Smith, Maureen R.;
Smyth, Redmond P.;
Marquet, Roland;
von Kleist, Max

Publication type:

Article

Towards the knowledge-based design of universal influenza epitope ensemble vaccines.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3233, doi. 10.1093/bioinformatics/btw399

By:

Sheikh, Qamar M.;
Gatherer, Derek;
Reche, Pedro A.;
Flower, Darren R.

Publication type:

Article

SYNBADm: a tool for optimization-based automated design of synthetic gene circuits.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3360, doi. 10.1093/bioinformatics/btw415

By:

Otero-Muras, Irene;
Henriques, David;
Banga, Julio R.

Publication type:

Article

Cyclo-lib: a database of computational molecular dynamics simulations of cyclodextrins.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3371, doi. 10.1093/bioinformatics/btw289

By:

Mixcoha, Edgar;
Rosende, Roberto;
Garcia-Fandino, Rebeca;
PiÁeiro, Ángel

Publication type:

Article

Icarus: visualizer for de novo assembly evaluation.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3321, doi. 10.1093/bioinformatics/btw379

By:

Mikheenko, Alla;
Valin, Gleb;
Prjibelski, Andrey;
Saveliev, Vladislav;
Gurevich, Alexey

Publication type:

Article

New quality measure for SNP array based CNV detection.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3298, doi. 10.1093/bioinformatics/btw477

By:

Macé, A.;
Tuke, M. A.;
Beckmann, J. S.;
Lin, L.;
Jacquemont, S.;
Weedon, M. N.;
Reymond, A.;
Kutalik, Z.

Publication type:

Article

CRISPR-DO for genome-wide CRISPR design and optimization.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3336, doi. 10.1093/bioinformatics/btw476

By:

Jian Ma;
Köster, Johannes;
Qian Qin;
Shengen Hu;
Wei Li;
Chenhao Chen;
Qingyi Cao;
Jinzeng Wang;
Shenglin Mei;
Qi Liu;
Han Xu;
Xiaole Shirley Liu

Publication type:

Article

cisASE: a likelihood-based method for detecting putative cis-regulated allele-specific expression in RNA sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3291, doi. 10.1093/bioinformatics/btw416

By:

Zhi Liu;
Tuantuan Gui;
Zhen Wang;
Hong Li;
Yunhe Fu;
Xiao Dong;
Yixue Li

Publication type:

Article

deBGA: read alignment with de Bruijn graph-based seed and extension.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3224, doi. 10.1093/bioinformatics/btw371

By:

Bo Liu;
Hongzhe Guo;
Brudno, Michael;
Yadong Wang

Publication type:

Article

Performance of protein-structure predictions with the physics-based UNRES force field in CASP11.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3270, doi. 10.1093/bioinformatics/btw404

By:

Krupa, Paweł;
Mozolewska, Magdalena A.;
Wiśniewska, Marta;
Yanping Yin;
Yi He;
Sieradzan, Adam K.;
Ganzynkowicz, Robert;
Lipska, Agnieszka G.;
Karczyńska, Agnieszka;
Ślusarz, Magdalena;
Ślusarz, Rafał;
Giełdoń, Artur;
Czaplewski, Cezary;
Jagieła, Dawid;
Zaborowski, Bartłomiej;
Scheraga, Harold A.;
Liwo, Adam

Publication type:

Article

MetaPred2CS: a sequence-based meta-predictor for protein--protein interactions of prokaryotic two-component system proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3339, doi. 10.1093/bioinformatics/btw403

By:

Kara, Altan;
Vickers, Martin;
Swain, Martin;
Whitworth, David E.;
Fernandez-Fuentes, Narcis

Publication type:

Article

Unbiased classification of spatial strategies in the Barnes maze.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3314, doi. 10.1093/bioinformatics/btw376

By:

Illouz, Tomer;
Madar, Ravit;
Clague, Charlotte;
Griffioen, Kathleen J.;
Louzoun, Yoram;
Okun, Eitan

Publication type:

Article

An empirical Bayes method for genotyping and SNP detection using multi-sample next-generation sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3240, doi. 10.1093/bioinformatics/btw409

By:

Gongyi Huang;
ShaoliWang;
Xueqin Wang;
Na You

Publication type:

Article

Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3260, doi. 10.1093/bioinformatics/btw396

By:

Xiuzhen Hu;
Qiwen Dong;
Jianyi Yang;
Yang Zhang

Publication type:

Article

BioNetGen 2.2: advances in rule-based modeling.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3366, doi. 10.1093/bioinformatics/btw469

By:

Harris, Leonard A.;
Hogg, Justin S.;
Tapia, José -Juan;
Sekar, John A. P.;
Gupta, Sanjana;
Korsunsky, Ilya;
Arora, Arshi;
Barua, Dipak;
Sheehan, Robert P.;
Faeder, James R.

Publication type:

Article

LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3215, doi. 10.1093/bioinformatics/btw470

By:

El-Metwally, Sara;
Zakaria, Magdi;
TaherHamza

Publication type:

Article

The SMAL web server: global multiple network alignment from pairwise alignments.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3330, doi. 10.1093/bioinformatics/btw402

By:

Dohrmann, Jakob;
Singh, Rahul

Publication type:

Article

Heat*seq: an interactive web tool for high-throughput sequencing experiment comparison with public data.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3354, doi. 10.1093/bioinformatics/btw407

By:

Devailly, Guillaume;
Mantsoki, Anna;
Joshi, Anagha

Publication type:

Article

A subpopulation model to analyze heterogeneous cell differentiation dynamics.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3306, doi. 10.1093/bioinformatics/btw395

By:

Yat Hin Chan;
Intosalmi, Jukka;
Rautio, Sini;
Lähdesmäki, Harri

Publication type:

Article

w4CSeq: software and web application to analyze 4C-seq data.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3333, doi. 10.1093/bioinformatics/btw408

By:

Mingyang Cai;
Fan Gao;
Wange Lu;
Kai Wang

Publication type:

Article

SwiSpot: modeling riboswitches by spotting out switching sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3252, doi. 10.1093/bioinformatics/btw401

By:

Barsacchi, Marco;
Novoa, Eva Maria;
Kellis, Manolis;
BechinI, Alessio

Publication type:

Article

AMIGO2, a toolbox for dynamic modeling, optimization and control in systems biology.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3357, doi. 10.1093/bioinformatics/btw411

By:

Balsa-Canto, Eva;
Henriques, David;
Gábor, Attila;
Banga, Julio R.

Publication type:

Article

SIFORM: shared informative factor models for integration of multi-platform bioinformatic data.

Published in:

Bioinformatics, 2016, v. 32, n. 21, p. 3279, doi. 10.1093/bioinformatics/btw295

By:

Xuebei An;
Jianhua Hu;
Kim-Anh Do

Publication type:

Article