Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 2

Results: 29

SIMToolbox: a MATLAB toolbox for structured illumination fluorescence microscopy.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 318, doi. 10.1093/bioinformatics/btv576

By:

Křížek, Pavel;
Lukeš, Tomáš;
Ovesný, Martin;
Fliegel, Karel;
Hagen, Guy M.

Publication type:

Article

XPIWIT--an XML pipeline wrapper for the Insight Toolkit.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 315, doi. 10.1093/bioinformatics/btv559

By:

Bartschat, Andreas;
Hübner, Eduard;
Reischl, Markus;
Mikut, Ralf;
Stegmaier, Johannes

Publication type:

Article

PathwaysWeb: a gene pathways API with directional interactions, expanded gene ontology, and versioning.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 312, doi. 10.1093/bioinformatics/btv554

By:

Melott, James M.;
Weinstein, John N.;
Broom, Bradley M.

Publication type:

Article

Cytoscape.js: a graph theory library for visualisation and analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 309, doi. 10.1093/bioinformatics/btv557

By:

Franz, Max;
Lopes, Christian T.;
Huck, Gerardo;
Yue Dong;
Sumer, Onur;
Bader, Gary D.

Publication type:

Article

XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 306, doi. 10.1093/bioinformatics/btv519

By:

Schweppe, Devin K.;
Chavez, Juan D.;
Bruce, James E.

Publication type:

Article

ALP & FALP: C++ libraries for pairwise local alignment E-values.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 304, doi. 10.1093/bioinformatics/btv575

By:

Sheetlin, Sergey;
Park, Yonil;
Frith, Martin C.;
Spouge, John L.

Publication type:

Article

cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 301, doi. 10.1093/bioinformatics/btv553

By:

Hodor, Paul;
Chawla, Amandeep;
Clark, Andrew;
Neal, Lauren

Publication type:

Article

ANARCI: antigen receptor numbering and receptor classification.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 298, doi. 10.1093/bioinformatics/btv552

By:

Dunbar, James;
Deane, Charlotte M.

Publication type:

Article

JEPEGMIX: gene-level joint analysis of functional SNPs in cosmopolitan cohorts.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 295, doi. 10.1093/bioinformatics/btv567

By:

Donghyung Lee;
Williamson, Vernell S.;
Bigdeli, T. Bernard;
Riley, Brien P.;
Webb, Bradley T.;
Fanous, Ayman H.;
Kendler, Kenneth S.;
Vladimirov, Vladimir I.;
Bacanu, Silviu-Alin

Publication type:

Article

Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 292, doi. 10.1093/bioinformatics/btv566

By:

Okonechnikov, Konstantin;
Conesa, Ana;
García-Alcalde, Fernando

Publication type:

Article

regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 289, doi. 10.1093/bioinformatics/btv562

By:

Gel, Bernat;
Díez-Villanueva, Anna;
Serra, Eduard;
Buschbeck, Marcus;
Peinado, Miguel A.;
Malinverni, Roberto

Publication type:

Article

missMethyl: an R package for analyzing data from Illumina's HumanMethylation450 platform.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 286, doi. 10.1093/bioinformatics/btv560

By:

Phipson, Belinda;
Maksimovic, Jovana;
Oshlack, Alicia

Publication type:

Article

Approximately independent linkage disequilibrium blocks in human populations.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 283, doi. 10.1093/bioinformatics/btv546

By:

Berisa, Tomaz;
Pickrell, Joseph K.

Publication type:

Article

Cell line name recognition in support of the identification of synthetic lethality in cancer from text.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 276, doi. 10.1093/bioinformatics/btv570

By:

Kaewphan, Suwisa;
Van Landeghem, Sofie;
Ohta, Tomoko;
Van de Peer, Yves;
Ginter, Filip;
Pyysalo, Sampo

Publication type:

Article

Warpgroup: increased precision of metabolomic data processing by consensus integration bound analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 268, doi. 10.1093/bioinformatics/btv564

By:

Mahieu, Nathaniel G.;
Spalding, Jonathan L.;
Patti, Gary J.

Publication type:

Article

ScreenBEAM: a novel meta-analysis algorithm for functional genomics screens via Bayesian hierarchical modeling.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 260, doi. 10.1093/bioinformatics/btv556

By:

Jiyang Yu;
Silva, Jose;
Califano, Andrea

Publication type:

Article

Positive-unlabeled ensemble learning for kinase substrate prediction from dynamic phosphoproteomics data.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 252, doi. 10.1093/bioinformatics/btv550

By:

Pengyi Yang;
Humphrey, Sean J.;
James, David E.;
Yee Hwa Yang;
Jothi, Raja

Publication type:

Article

XTALK: a path-based approach for identifying crosstalk between signaling pathways.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 242, doi. 10.1093/bioinformatics/btv549

By:

Tegge, Allison N.;
Sharp, Nicholas;
Murali, T. M.

Publication type:

Article

Drug-set enrichment analysis: a novel tool to investigate drug mode of action.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 235, doi. 10.1093/bioinformatics/btv536

By:

Napolitano, Francesco;
Sirci, Francesco;
Carrella, Diego;
di Bernardo, Diego

Publication type:

Article

Computational probing protein-protein interactions targeting small molecules.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 226, doi. 10.1093/bioinformatics/btv528

By:

Yong-Cui Wang;
Shi-Long Chen;
Nai-Yang Deng;
Yong Wang

Publication type:

Article

Computational modeling of development by epithelia, mesenchyme and their interactions: a unified model.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 219, doi. 10.1093/bioinformatics/btv527

By:

Marin-Riera, Miquel;
Brun-Usan, Miguel;
Zimm, Roland;
Välikangas, Tommi;
Salazar-Ciudad, Isaac

Publication type:

Article

HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 211, doi. 10.1093/bioinformatics/btv563

By:

Shuang Wang;
Yuchen Zhang;
Dai, Wenrui;
Lauter, Kristin;
Miran Kim;
Yuzhe Tang;
Hongkai Xiong;
Xiaoqian Jiang

Publication type:

Article

JBASE: Joint Bayesian Analysis of Subphenotypes and Epistasis.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 203, doi. 10.1093/bioinformatics/btv504

By:

Colak, Recep;
TaeHyung Kim;
Kazan, Hilal;
Yoomi Oh;
Cruz, Miguel;
Valladares-Salgado, Adan;
Peralta, Jesus;
Escobedo, Jorge;
Parra, Esteban J.;
Kim, Philip M.;
Goldenberg, Anna

Publication type:

Article

Generalized empirical Bayesian methods for discovery of differential data in high-throughput biology.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 195, doi. 10.1093/bioinformatics/btv569

By:

Hardcastle, Thomas J.

Publication type:

Article

Pseudoknots in RNA folding landscapes.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 187, doi. 10.1093/bioinformatics/btv572

By:

Kucharík, Marcel;
Hofacker, Ivo L.;
Stadler, Peter F.;
Jing Qin

Publication type:

Article

Exploring peptide/MHC detachment processes using hierarchical natural move Monte Carlo.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 181, doi. 10.1093/bioinformatics/btv502

By:

Knapp, Bernhard;
Demharter, Samuel;
Deane, Charlotte M.;
Minary, Peter

Publication type:

Article

smallWig: parallel compression of RNA-seq WIG files.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 173, doi. 10.1093/bioinformatics/btv561

By:

Zhiying Wang;
Weissman, Tsachy;
Milenkovic, Olgica

Publication type:

Article

MDD-SOH: exploiting maximal dependence decomposition to identify S-sulfenylation sites with substrate motifs.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 165, doi. 10.1093/bioinformatics/btv558

By:

Van-Minh Bui;
Cheng-Tsung Lu;
Thi-Trang Ho;
Tzong-Yi Lee

Publication type:

Article

APTANI: a computational tool to select aptamers through sequence-structure motif analysis of HT-SELEX data.

Published in:

Bioinformatics, 2016, v. 32, n. 2, p. 161, doi. 10.1093/bioinformatics/btv545

By:

Caroli, J.;
Taccioli, C.;
De La Fuente, A.;
Serafini, P.;
Bicciato, S.

Publication type:

Article