Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 17

Results: 81

ECCB 2016 ORGANIZATION.

Published in:: Bioinformatics, 2016, v. 32, n. 17, p. i393, doi. 10.1093/bioinformatics/btw480
Publication type:: Article

Author Index.

Published in:: Bioinformatics, 2016, v. 32, n. 17, p. i798, doi. 10.1093/bioinformatics/btw573
Publication type:: Article

A unified model based multifactor dimensionality reduction framework for detecting gene--gene interactions.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i605, doi. 10.1093/bioinformatics/btw424

By:

Wenbao Yu;
Seungyeoun Lee;
Taesung Park

Publication type:

Article

FastHiC: a fast and accurate algorithm to detect long-range chromosomal interactions from Hi-C data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2692, doi. 10.1093/bioinformatics/btw240

By:

Zheng Xu;
Guosheng Zhang;
Cong Wu;
Yun Li;
Ming Hu

Publication type:

Article

Bioinformatics programs are 31-fold over-represented among the highest impact scientific papers of the past two decades.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2686, doi. 10.1093/bioinformatics/btw284

By:

Wren, Jonathan D.

Publication type:

Article

OrfM: a fast open reading frame predictor for metagenomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2702, doi. 10.1093/bioinformatics/btw241

By:

Woodcroft, Ben J.;
Boyd, Joel A.;
Tyson, Gene W.

Publication type:

Article

AUCpreD: proteome-level protein disorder prediction by AUC-maximized deep convolutional neural fields.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i672, doi. 10.1093/bioinformatics/btw446

By:

Sheng Wang;
Jianzhu Ma;
Jinbo Xu

Publication type:

Article

BAM-matcher: a tool for rapid NGS sample matching.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2699, doi. 10.1093/bioinformatics/btw239

By:

Wang, Paul P. S.;
Parker, Wendy T.;
Branford, Susan;
Schreiber, Andreas W.

Publication type:

Article

Patterns of amino acid conservation in human and animal immunodeficiency viruses.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i685, doi. 10.1093/bioinformatics/btw441

By:

Voitenko, Olga S.;
Dhroso, Andi;
Feldmann, Anna;
Korkin, Dmitry;
Kalinina, Olga V.

Publication type:

Article

SWORD--a highly efficient protein database search.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i680, doi. 10.1093/bioinformatics/btw445

By:

Vaser, Robert;
Pavlović, Dario;
Šikić, Mile

Publication type:

Article

TOPDOM: database of conservatively located domains and motifs in proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2725, doi. 10.1093/bioinformatics/btw193

By:

Varga, Julia;
Dobson, László;
Tusnády, Gábor E.

Publication type:

Article

PRED-TMBB2: improved topology prediction and detection of beta-barrel outer membrane proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i665, doi. 10.1093/bioinformatics/btw444

By:

Tsirigos, Konstantinos D.;
Elofsson, Arne;
Bagos, Pantelis G.

Publication type:

Article

Edge-based sensitivity analysis of signaling networks by using Boolean dynamics.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i763, doi. 10.1093/bioinformatics/btw464

By:

Hung-Cuong Trinh;
Yung-Keun Kwon

Publication type:

Article

Logical model specification aided by model-checking techniques: application to the mammalian cell cycle regulation.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i772, doi. 10.1093/bioinformatics/btw457

By:

Traynard, Pauline;
Fauré, Adrien;
Fages, François;
Thieffry, Denis

Publication type:

Article

Detecting horizontal gene transfer by mapping sequencing reads across species boundaries.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i595, doi. 10.1093/bioinformatics/btw423

By:

Trappe, Kathrin;
Marschall, Tobias;
Renard, Bernhard Y.

Publication type:

Article

Corrigendum.

Published in:: 2016
Publication type:: Correction Notice

GTRAC: fast retrieval from compressed collections of genomic variants.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i479, doi. 10.1093/bioinformatics/btw437

By:

Tatwawadi, Kedar;
Hernaez, Mikel;
Ochoa, Idoia;
Weissman, Tsachy

Publication type:

Article

PERMANOVA-S: association test for microbial community composition that accommodates confounders and multiple distances.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2618, doi. 10.1093/bioinformatics/btw311

By:

Zheng-Zheng Tang;
Guanhua Chen;
Alekseyenko, Alexander V.

Publication type:

Article

ProbOnto: ontology and knowledge base of probability distributions.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2719, doi. 10.1093/bioinformatics/btw170

By:

Swat, Maciej J.;
Grenon, Pierre;
Wimalaratne, Sarala

Publication type:

Article

The Network Library: a framework to rapidly integrate network biology resources.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i473, doi. 10.1093/bioinformatics/btw436

By:

Summer, Georg;
Kelder, Thomas;
Radonjic, Marijana;
van Bilsen, Marc;
Wopereis, Suzan;
Heymans, Stephane

Publication type:

Article

SimLoRD: Simulation of Long Read Data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2704, doi. 10.1093/bioinformatics/btw286

By:

Stöcker, Bianca K.;
Köster, Johannes;
Rahmann, Sven

Publication type:

Article

L<sub>1</sub> regularization facilitates detection of cell type-specific parameters in dynamical systems.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i718, doi. 10.1093/bioinformatics/btw461

By:

Steiert, Bernhard;
Timmer, Jens;
Kreutz, Clemens

Publication type:

Article

Evaluation of hybrid and non-hybrid methods for de novo assembly of nanopore reads.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2582, doi. 10.1093/bioinformatics/btw237

By:

Sović, Ivan;
Križanović, Krešimir;
Skala, Karolj;
Šikić, Mile

Publication type:

Article

DeepChrome: deep-learning for predicting gene expression from histone modifications.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i639, doi. 10.1093/bioinformatics/btw427

By:

Singh, Ritambhara;
Lanchantin, Jack;
Robins, Gabriel;
Yanjun Qi

Publication type:

Article

Information-optimal genome assembly via sparse read-overlap graphs.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i494, doi. 10.1093/bioinformatics/btw450

By:

Shomorony, Ilan;
Kim, Samuel H.;
Courtade, Thomas A.;
Tse, David N. C.

Publication type:

Article

PanTools: representation, storage and exploration of pan-genomic data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i487, doi. 10.1093/bioinformatics/btw455

By:

Sheikhizadeh, Siavash;
Schranz, M. Eric;
Akdel, Mehmet;
de Ridder, Dick;
Smit, Sandra

Publication type:

Article

Fast genotyping of known SNPs through approximate k-mer matching.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i538, doi. 10.1093/bioinformatics/btw460

By:

Shajii, Ariya;
Yorukoglu, Deniz;
Yu, Yun William;
Berger, Bonnie

Publication type:

Article

XLinkDB 2.0: integrated, large-scale structural analysis of protein crosslinking data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2716, doi. 10.1093/bioinformatics/btw232

By:

Schweppe, Devin K.;
Chunxiang Zheng;
Chavez, Juan D.;
Navare, Arti T.;
Xia Wu;
Eng, Jimmy K.;
Bruce, James E.

Publication type:

Article

Benchmarking the next generation of homology inference tools.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2636, doi. 10.1093/bioinformatics/btw305

By:

Saripella, Ganapathi Varma;
Sonnhammer, Erik L. L.;
Forslund, Kristoffer

Publication type:

Article

On cross-conditional and fluctuation correlations in competitive RNA networks.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i790, doi. 10.1093/bioinformatics/btw472

By:

Sánchez-Taltavull, Daniel;
MacLeod, Matthew;
Perkins, Theodore J.

Publication type:

Article

PRESS: PRotEin S-Sulfenylation server.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2710, doi. 10.1093/bioinformatics/btw301

By:

Sakka, Marianna;
Tzortzis, Grigorios;
Mantzaris, Michalis D.;
Bekas, Nick;
Kellici, Tahsin F.;
Likas, Aristidis;
Galaris, Dimitrios;
Gerothanassis, Ioannis P.;
Tzakos, Andreas G.

Publication type:

Article

iReMet-flux: constraint-based approach for integrating relative metabolite levels into a stoichiometric metabolic models.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i755, doi. 10.1093/bioinformatics/btw465

By:

Sajitz-Hermstein, Max;
Töpfer, Nadine;
Kleessen, Sabrina;
Fernie, Alisdair R.;
Nikoloski, Zoran

Publication type:

Article

ProbFold: a probabilistic method for integration of probing data in RNA secondary structure prediction.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2626, doi. 10.1093/bioinformatics/btw175

By:

Sahoo, Sudhakar;
Świtnicki, Michał P.;
Pedersen, Jakob Skou

Publication type:

Article

Genome wide predictions of miRNA regulation by transcription factors.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i746, doi. 10.1093/bioinformatics/btw452

By:

Ruffalo, Matthew;
Bar-Joseph, Ziv

Publication type:

Article

Calculating and scoring high quality multiple flexible protein structure alignments.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2650, doi. 10.1093/bioinformatics/btw300

By:

Ritchie, David W.

Publication type:

Article

Combining dependent P-values with an empirical adaptation of Brown's method.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i430, doi. 10.1093/bioinformatics/btw438

By:

Poole, William;
Gibbs, David L.;
Shmulevich, Ilya;
Bernard, Brady;
Knijnenburg, Theo A.

Publication type:

Article

SA-SSR: a suffix array-based algorithm for exhaustive and efficient SSR discovery in large genetic sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2707, doi. 10.1093/bioinformatics/btw298

By:

Pickett, B. D.;
Karlinsey, S. M.;
Penrod, C. E.;
Cormier, M. J.;
Ebbert, M. T. W.;
Shiozawa, D. K.;
Whipple, C. J.;
Ridge, P. G.

Publication type:

Article

Simulated linear test applied to quantitative proteomics.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i702, doi. 10.1093/bioinformatics/btw440

By:

Pham, T. V.;
Jimenez, C. R.

Publication type:

Article

A computational model to predict the immune system activation by citrus-derived vaccine adjuvants.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2672, doi. 10.1093/bioinformatics/btw293

By:

Pappalardo, Francesco;
Fichera, Epifanio;
Paparone, Nicoletta;
Lombardo, Alessandro;
Pennisi, Marzio;
Russo, Giulia;
Leotta, Marco;
Pedretti, Alessandro;
De Fiore, Francesco;
Motta, Santo

Publication type:

Article

RCP: a novel probe design bias correction method for Illumina Methylation BeadChip.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2659, doi. 10.1093/bioinformatics/btw285

By:

Liang Niu;
Zongli Xu;
Taylor, Jack A.

Publication type:

Article

A probabilistic model for detecting rigid domains in protein structures.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i710, doi. 10.1093/bioinformatics/btw442

By:

Nguyen, Thach;
Habeck, Michael

Publication type:

Article

PEPSI-Dock: a detailed data-driven protein-protein interaction potential accelerated by polar Fourier correlation.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i693, doi. 10.1093/bioinformatics/btw443

By:

Neveu, Emilie;
Ritchie, David W.;
Popov, Petr;
Grudinin, Sergei

Publication type:

Article

Large-scale inference of conjunctive Bayesian networks.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i727, doi. 10.1093/bioinformatics/btw459

By:

Montazeri, Hesam;
Kuipers, Jack;
Kouyos, Roger;
Böni, Jürg;
Yerly, Sabine;
Klimkait, Thomas;
Aubert, Vincent;
Günthard, Huldrych F.;
Beerenwinkel, Niko

Publication type:

Article

Optimization of signal-to-noise ratio for efficient microarray probe design.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i552, doi. 10.1093/bioinformatics/btw451

By:

Matveeva, Olga V.;
Nechipurenko, Yury D.;
Riabenko, Evgeniy;
Ragan, Chikako;
Nazipova, Nafisa N.;
Ogurtsov, Aleksey Y.;
Shabalina, Svetlana A.

Publication type:

Article

Drug repositioning based on comprehensive similarity measures and Bi-Random walk algorithm.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2664, doi. 10.1093/bioinformatics/btw228

By:

Huimin Luo;
Jianxin Wang;
Min Li;
Junwei Luo;
Xiaoqing Peng;
Fang-Xiang Wu;
Yi Pan

Publication type:

Article

Tools4miRs - one place to gather all the tools for miRNA analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2722, doi. 10.1093/bioinformatics/btw189

By:

Lukasik, Anna;
Wójcikowski, Maciej;
Zielenkiewicz, Piotr

Publication type:

Article

Computational discovery and in vivo validation of hnf4 as a regulatory gene in planarian regeneration.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. 2681, doi. 10.1093/bioinformatics/btw299

By:

Lobo, Daniel;
Junji Morokuma;
Levin, Michael

Publication type:

Article

Estimating real cell size distribution from cross-section microscopy imaging.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i396, doi. 10.1093/bioinformatics/btw431

By:

Lenz, Michael;
Roumans, Nadia J. T.;
Vink, Roel G.;
van Baak, Marleen A.;
Mariman, Edwin C. M.;
Arts, Ilja C. W.;
de Kok, Theo M.;
Ertaylan, Gökhan

Publication type:

Article

A weighted exact test for mutually exclusive mutations in cancer.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i736, doi. 10.1093/bioinformatics/btw462

By:

Leiserson, Mark D. M.;
Reyna, Matthew A.;
Raphael, Benjamin J.

Publication type:

Article

Assemble CRISPRs from metagenomic sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 17, p. i520, doi. 10.1093/bioinformatics/btw456

By:

Jikai Lei;
Yanni Sun

Publication type:

Article