Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 16

Results: 36

Mollack: a web server for the automated creation of conformational ensembles for intrinsically disordered proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2545, doi. 10.1093/bioinformatics/btw200

By:

Ziegler, Zachary;
Schmidt, Molly;
Gurry, Thomas;
Burger, Virginia;
Stultz, Collin M.

Publication type:

Article

R<sub>2</sub>C: improving ab initio residue contact map prediction using dynamic fusion strategy and Gaussian noise filter.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2435, doi. 10.1093/bioinformatics/btw181

By:

Jing Yang;
Qi-Yu Jin;
Biao Zhang;
Hong-Bin Shen

Publication type:

Article

Efficient identification and analysis of chemical exchange in biomolecules by R<sub>1ρ</sub> relaxation dispersion with Amaterasu.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2539, doi. 10.1093/bioinformatics/btw188

By:

Erik Walinda;
Daichi Morimoto;
Mayu Nishizawa;
Masahiro Shirakawa;
Kenji Sugase

Publication type:

Article

Muxstep: an open-source C++ multiplex HMM library for making inferences on multiple data types.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2562, doi. 10.1093/bioinformatics/btw196

By:

Veličković, Petar;
Liò, Pietro

Publication type:

Article

methyLiftover: cross-platform DNA methylation data integration.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2517, doi. 10.1093/bioinformatics/btw180

By:

Titus, Alexander J.;
Houseman, E. Andrés;
Johnson, Kevin C.;
Christensen, Brock C.

Publication type:

Article

CHiCP: a web-based tool for the integrative and interactive visualization of promoter capture Hi-C datasets.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2511, doi. 10.1093/bioinformatics/btw173

By:

Schofield, E. C.;
Carver, T.;
Achuthan, P.;
Freire-Pritchett, P.;
Spivakov, M.;
Todd, J. A.;
Burren, O. S.

Publication type:

Article

INPS-MD: a web server to predict stability of protein variants from sequence and structure.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2542, doi. 10.1093/bioinformatics/btw192

By:

Savojardo, Castrense;
Fariselli, Piero;
Martelli, Pier Luigi;
Casadio, Rita

Publication type:

Article

IQRray, a new method for Affymetrix microarray quality control, and the homologous organ conservation score, a new benchmark method for quality control metrics.

Published in:: 2016
Publication type:: Correction Notice

OREMPRO web server: orientation and assessment of atomistic and coarse-grained structures of membrane proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2548, doi. 10.1093/bioinformatics/btw208

By:

Postic, Guillaume;
Ghouzam, Yassine;
Gelly, Jean-Christophe

Publication type:

Article

MINTbase: a framework for the interactive exploration of mitochondrial and nuclear tRNA fragments.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2481, doi. 10.1093/bioinformatics/btw194

By:

Pliatsika, Venetia;
Loher, Phillipe;
Telonis, Aristeidis G.;
Rigoutsos, Isidore

Publication type:

Article

TnT: a set of libraries for visualizing trees and track-based annotations for the web.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2524, doi. 10.1093/bioinformatics/btw210

By:

Pignatelli, Miguel

Publication type:

Article

TreeQTL: hierarchical error control for eQTL findings.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2556, doi. 10.1093/bioinformatics/btw198

By:

Peterson, C. B.;
Bogomolov, M.;
Benjamini, Y.;
Sabatti, C.

Publication type:

Article

PREDAC-H3: a user-friendly platform for antigenic surveillance of human influenza a(H3N2) virus based on hemagglutinin sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2526, doi. 10.1093/bioinformatics/btw185

By:

Yousong Peng;
Lei Yang;
Honglei Li;
Yuanqiang Zou;
Lizong Deng;
Aiping Wu;
Xiangjun Du;
Dayan Wang;
Yuelong Shu;
Taijiao Jiang

Publication type:

Article

hotspot: software to support sperm-typing for investigating recombination hotspots.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2554, doi. 10.1093/bioinformatics/btw195

By:

Odenthal-Hesse, Linda;
Dutheil, Julien Y.;
Klötzl, Fabian;
Haubold, Bernhard

Publication type:

Article

ProtPOS: a python package for the prediction of protein preferred orientation on a surface.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2537, doi. 10.1093/bioinformatics/btw182

By:

Ngai, Jimmy C. F.;
Pui-In Mak;
Siu, Shirley W. I.

Publication type:

Article

Rail-dbGaP: analyzing dbGaP-protected data in the cloud with Amazon Elastic MapReduce.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2551, doi. 10.1093/bioinformatics/btw177

By:

Nellore, Abhinav;
Wilks, Christopher;
Hansen, Kasper D.;
Leek, Jeffrey T.;
Langmead, Ben

Publication type:

Article

rflowAI: automatic and interactive anomaly discerning tools for flow cytometry data.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2473, doi. 10.1093/bioinformatics/btw191

By:

Monaco, Gianni;
Hao Chen;
Poidinger, Michael;
Jinmiao Chen;
de Magalhães, João Pedro;
Larbi, Anis

Publication type:

Article

ProtAnnot: an App for Integrated Genome Browser to display how alternative splicing and transcription affect proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2499, doi. 10.1093/bioinformatics/btw068

By:

Mall, Tarun;
Eckstein, John;
Norris, David;
Vora, Hiral;
Freese, Nowlan H.;
Loraine, Ann E.

Publication type:

Article

SBtab: a flexible table format for data exchange in systems biology.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2559, doi. 10.1093/bioinformatics/btw179

By:

Lubitz, Timo;
Hahn, Jens;
Bergmann, Frank T.;
Noor, Elad;
Klipp, Edda;
Liebermeister, Wolfram

Publication type:

Article

PinSnps: structural and functional analysis of SNPs in the context of protein interaction networks.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2534, doi. 10.1093/bioinformatics/btw153

By:

Hui-Chun Lu;
Braga, Julián Herrera;
Fraternali, Franca

Publication type:

Article

iDHS-EL: identifying DNase I hypersensitive sites by fusing three different modes of pseudo nucleotide composition into an ensemble learning framework.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2411, doi. 10.1093/bioinformatics/btw186

By:

Bin Liu;
Ren Long;
Kuo-Chen Chou

Publication type:

Article

MGEScan: a Galaxy-based system for identifying retrotransposons in genomes.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2502, doi. 10.1093/bioinformatics/btw157

By:

Hyungro Lee;
Minsu Lee;
Ismail, Wazim Mohammed;
Mina Rho;
Fox, Geoffrey C.;
Sangyoon Oh;
Haixu Tang

Publication type:

Article

Partitioning and correlating subgroup characteristics from Aligned Pattern Clusters.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2427, doi. 10.1093/bioinformatics/btw211

By:

Lee, En-Shiun Annie;
Whelan, Fiona J.;
Bowdish, Dawn M. E.;
Wong, Andrew K. C.

Publication type:

Article

Shape complementarity and hydrogen bond preferences in protein-protein interfaces: implications for antibody modeling and protein-protein docking.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2451, doi. 10.1093/bioinformatics/btw197

By:

Daisuke Kuroda;
Gray, Jeffrey J.

Publication type:

Article

MOCAT2: a metagenomic assembly, annotation and profiling framework.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2520, doi. 10.1093/bioinformatics/btw183

By:

Kultima, Jens Roat;
Coelho, Luis Pedro;
Forslund, Kristoffer;
Huerta-Cepas, Jaime;
Li, Simone S.;
Driessen, Marja;
Voigt, Anita Yvonne;
Zeller, Georg;
Sunagawa, Shinichi;
Bork, Peer

Publication type:

Article

mDCC_tools: characterizing multi-modal atomic motions in molecular dynamics trajectories.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2531, doi. 10.1093/bioinformatics/btw129

By:

Kota Kasahara;
Neetha Mohan;
Ikuo Fukuda;
Haruki Nakamura

Publication type:

Article

Quality control of single-cell RNA-seq by SinQC.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2514, doi. 10.1093/bioinformatics/btw176

By:

Peng Jiang;
Thomson, James A.;
Stewart, Ron

Publication type:

Article

Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2419, doi. 10.1093/bioinformatics/btw209

By:

Jankowski, Aleksander;
Tiuryn, Jerzy;
Prabhakar, Shyam

Publication type:

Article

Memdock: an α-helical membrane protein docking algorithm.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2444, doi. 10.1093/bioinformatics/btw184

By:

Hurwitz, Naama;
Schneidman-Duhovny, Dina;
Wolfson, Haim J.

Publication type:

Article

Identifying cell-specific microRNA transcriptional start sites.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2403, doi. 10.1093/bioinformatics/btw171

By:

Xu Hua;
Luxiao Chen;
Jin Wang;
Jie Li;
Wingender, Edgar

Publication type:

Article

OxyBS: estimation of 5-methylcytosine and 5-hydroxymethylcytosine from tandem-treated oxidative bisulfite and bisulfite DNA.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2505, doi. 10.1093/bioinformatics/btw158

By:

Houseman, E. Andres;
Johnson, Kevin C.;
Christensen, Brock C.

Publication type:

Article

MEMO: multi-experiment mixture model analysis of censored data.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2464, doi. 10.1093/bioinformatics/btw190

By:

Geissen, Eva-Maria;
Hasenauer, Jan;
Heinrich, Stephanie;
Hauf, Silke;
Theis, Fabian J.;
Radde, Nicole E.

Publication type:

Article

Pasha: a versatile R package for piling chromatin HTS data.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2528, doi. 10.1093/bioinformatics/btw206

By:

Fenouil, Romain;
Descostes, Nicolas;
Spinelli, Lionel;
Koch, Frederic;
Maqbool, Muhammad Ahmad;
Benoukraf, Touati;
Cauchy, Pierre;
Innocenti, Charlène;
Ferrier, Pierre;
Andrau, Jean-Christophe

Publication type:

Article

gEVAL--a web-based browser for evaluating genome assemblies.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2508, doi. 10.1093/bioinformatics/btw159

By:

Chow, William;
Brugger, Kim;
Caccamo, Mario;
Sealy, Ian;
Torrance, James;
Howe, Kerstin

Publication type:

Article

Sparse group factor analysis for biclustering of multiple data sources.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2457, doi. 10.1093/bioinformatics/btw207

By:

Bunte, Kerstin;
Leppäaaho, Eemeli;
Saarinen, Inka;
Kaski, Samuel

Publication type:

Article

2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity.

Published in:

Bioinformatics, 2016, v. 32, n. 16, p. 2490, doi. 10.1093/bioinformatics/btw172

By:

Basu, Subhadip;
Plewczynski, Dariusz;
Saha, Satadal;
Roszkowska, Matylda;
Magnowska, Marta;
Baczynska, Ewa;
Wlodarczyk, Jakub

Publication type:

Article