Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 13

Results: 35

IsomiR Bank: a research resource for tracking IsomiRs.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2069, doi. 10.1093/bioinformatics/btw070

By:

Yuanwei Zhang;
Qiguang Zang;
Bo Xu;
Wei Zheng;
Rongjun Ban;
Huan Zhang;
Yifan Yang;
Qiaomei Hao;
Furhan Iqbal;
Ao Li;
Qinghua Shi

Publication type:

Article

PON-Sol: prediction of effects of amino acid substitutions on protein solubility.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2032, doi. 10.1093/bioinformatics/btw066

By:

Yang Yang;
Niroula, Abhishek;
Shen, Bairong;
Vihinen, Mauno

Publication type:

Article

Transcript structure and domain display: a customizable transcript visualization tool.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2024, doi. 10.1093/bioinformatics/btw095

By:

Watanabe, Kenneth A.;
Kaiwang Ma;
Homayouni, Arielle;
Rushton, Paul J.;
Shen, Qingxi J.

Publication type:

Article

VariantBam: filtering and profiling of nextgenerational sequencing data using region-specific rules.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2029, doi. 10.1093/bioinformatics/btw111

By:

Wala, Jeremiah;
Cheng-Zhong Zhang;
Meyerson, Matthew;
Beroukhim, Rameen

Publication type:

Article

RIPPER: a framework for MS1 only metabolomics and proteomics label-free relative quantification.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2035, doi. 10.1093/bioinformatics/btw091

By:

Van Riper, Susan K.;
Higgins, LeeAnn;
Carlis, John V.;
Griffin, Timothy J.

Publication type:

Article

Direct calculation of minimal cut sets involving a specific reaction knock-out.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2001, doi. 10.1093/bioinformatics/btw072

By:

Tobalina, Luis;
Pey, Jon;
Planes, Francisco J.

Publication type:

Article

Phasing for medical sequencing using rare variants and large haplotype reference panels.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1974, doi. 10.1093/bioinformatics/btw065

By:

Sharp, Kevin;
Kretzschmar, Warren;
Delaneau, Olivier;
Marchini, Jonathan

Publication type:

Article

Alpha-CENTAURI: assessing novel centromeric repeat sequence variation with long read sequencing.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1921, doi. 10.1093/bioinformatics/btw101

By:

Sevim, Volkan;
Bashir, Ali;
Chen-Shan Chin;
Miga, Karen H.

Publication type:

Article

FRED 2: an immunoinformatics framework for Python.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2044, doi. 10.1093/bioinformatics/btw113

By:

Schubert, Benjamin;
Walzer, Mathias;
Brachvogel, Hans-Philipp;
Szolek, András;
Mohr, Christopher;
Kohlbacher, Oliver

Publication type:

Article

Assembly scaffolding with PE-contaminated mate-pair libraries.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1925, doi. 10.1093/bioinformatics/btw064

By:

Sahlin, Kristoffer;
Chikhi, Rayan;
Arvestad, Lars

Publication type:

Article

Tally: a scoring tool for boundary determination between repetitive and non-repetitive protein sequences.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1952, doi. 10.1093/bioinformatics/btw118

By:

Richard, François D.;
Alves, Ronnie;
Kajava, Andrey V.

Publication type:

Article

Reaction Decoder Tool (RDT): extracting features from chemical reactions.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2065, doi. 10.1093/bioinformatics/btw096

By:

Rahman, Syed Asad;
Torrance, Gilliean;
Baldacci, Lorenzo;
Martínez Cuesta, Sergio;
Fenninger, Franz;
Gopal, Nimish;
Choudhary, Saket;
May, John W.;
Holliday, Gemma L.;
Steinbeck, Christoph;
Thornton, Janet M.

Publication type:

Article

Cas-Database: web-based genome-wide guide RNA library design for gene knockout screens using CRISPR-Cas9.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2017, doi. 10.1093/bioinformatics/btw103

By:

Jeongbin Park;
Jin-Soo Kim;
Sangsu Bae

Publication type:

Article

SASpy: a PyMOL plugin for manipulation and refinement of hybrid models against small angle X-ray scattering data.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2062, doi. 10.1093/bioinformatics/btw071

By:

Panjkovich, Alejandro;
Svergun, Dmitri I.

Publication type:

Article

Goldilocks: a tool for identifying genomic regions that are 'just right'.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2047, doi. 10.1093/bioinformatics/btw116

By:

Nicholls, Samuel M.;
Clare, Amanda;
Randall, Joshua C.

Publication type:

Article

NMRPro: an integrated web component for interactive processing and visualization of NMR spectra.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2067, doi. 10.1093/bioinformatics/btw102

By:

Mohamed, Ahmed;
Canh Hao Nguyen;
Hiroshi Mamitsuka

Publication type:

Article

A web application for sample size and power calculation in case-control microbiome studies.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2038, doi. 10.1093/bioinformatics/btw099

By:

Mattiello, Federico;
Verbist, Bie;
Faust, Karoline;
Raes, Jeroen;
Shannon, William D.;
Bijnens, Luc;
Thas, Olivier

Publication type:

Article

Comment on 'Discovering hospital admission patterns using models learnt from electronic hospital records'. The importance of using the right codes.

Published in:

2016

By:

Lopez-Campos, Guillermo H.;
Martin-Sanchez, Fernando;
Gray, Kathleen

Publication type:

Opinion

PhamDB: a web-based application for building Phamerator databases.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2026, doi. 10.1093/bioinformatics/btw106

By:

Lamine, James G.;
DeJong, Randall J.;
Nelesen, Serita M.

Publication type:

Article

Detection and removal of spatial bias in multiwell assays.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1959, doi. 10.1093/bioinformatics/btw092

By:

Lachmann, Alexander;
Giorgi, Federico M.;
Alvarez, Mariano J.;
Califano, Andrea

Publication type:

Article

A mutation profile for top-k patient search exploiting Gene-Ontology and orthogonal non-negative matrix factorization.

Published in:

2016

By:

Sungchul Kim;
Lee Sael;
Hwanjo Yu

Publication type:

Correction Notice

Visual Omics Explorer (VOE): a cross-platform portal for interactive data visualization.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2050, doi. 10.1093/bioinformatics/btw119

By:

Baekdoo Kim;
Ali, Thahmina;
Hosmer, Samuel;
Krampis, Konstantinos

Publication type:

Article

MetaKTSP: a meta-analytic top scoring pair method for robust cross-study validation of omics prediction analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1966, doi. 10.1093/bioinformatics/btw115

By:

SungHwan Kim;
Chien-Wei Lin;
Tseng, George. C.

Publication type:

Article

A simple method to control over-alignment in the MAFFT multiple sequence alignment program.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1933, doi. 10.1093/bioinformatics/btw108

By:

Kazutaka Katoh;
Standley, Daron M.

Publication type:

Article

ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2056, doi. 10.1093/bioinformatics/btw105

By:

Jacox, Edwin;
Chauve, Cedric;
Szöllősi, Gergely J.;
Ponty, Yann;
Scornavacca, Celine

Publication type:

Article

OpenSegSPIM: a user-friendly segmentation tool for SPIM data.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2075, doi. 10.1093/bioinformatics/btw093

By:

Gole, Laurent;
Kok Haur Ong;
Boudier, Thomas;
Weimiao Yu;
Ahmed, Sohail

Publication type:

Article

Branch: an interactive, web-based tool for testing hypotheses and developing predictive models.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2072, doi. 10.1093/bioinformatics/btw117

By:

Gangavarapu, Karthik;
Babji, Vyshakh;
Meißner, Tobias;
Su, Andrew I.;
Good, Benjamin M.

Publication type:

Article

An algorithm for designing minimal microbial communities with desired metabolic capacities.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2008, doi. 10.1093/bioinformatics/btw107

By:

Eng, Alexander;
Borenstein, Elhanan

Publication type:

Article

repgenHMM: a dynamic programming tool to infer the rules of immune receptor generation from sequence data.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1943, doi. 10.1093/bioinformatics/btw112

By:

Elhanati, Yuval;
Marcou, Quentin;
Mora, Thierry;
Walczak, Aleksandra M.

Publication type:

Article

ORFanFinder: automated identification of taxonomically restricted orphan genes.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2053, doi. 10.1093/bioinformatics/btw122

By:

Ekstrom, Alex;
Yanbin Yin

Publication type:

Article

metaCCA: summary statistics-based multivariate meta-analysis of genome-wide association studies using canonical correlation analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1981, doi. 10.1093/bioinformatics/btw052

By:

Cichonska, Anna;
Rousu, Juho;
Marttinen, Pekka;
Kangas, Antti J.;
Soininen, Pasi;
Lehtimäki, Terho;
Raitakari, Olli T.;
Järvelin, Marjo-Riitta;
Salomaa, Veikko;
Ala-Korpela, Mika;
Ripatti, Samuli;
Pirinen, Matti

Publication type:

Article

Computational clustering for viral reference proteomes.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2041, doi. 10.1093/bioinformatics/btw110

By:

Chuming Chen;
Hongzhan Huang;
Mazumder, Raja;
Natale, Darren A.;
McGarvey, Peter B.;
Jian Zhang;
Polson, Shawn W.;
Yuqi Wang;
Wu, Cathy H.

Publication type:

Article

Assessing statistical significance in multivariable genome wide association analysis.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 1990, doi. 10.1093/bioinformatics/btw128

By:

Buzdugan, Laura;
Kalisch, Markus;
Navarro, Arcadi;
Schunk, Daniel;
Fehr, Ernst;
Bühlmann, Peter

Publication type:

Article

FRAGSION: ultra-fast protein fragment library generation by IOHMM sampling.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2059, doi. 10.1093/bioinformatics/btw067

By:

Bhattacharya, Debswapna;
Adhikari, Badri;
Jilong Li;
Jianlin Cheng

Publication type:

Article

On the discovery of hospital admission patterns—a clarification.

Published in:

Bioinformatics, 2016, v. 32, n. 13, p. 2078, doi. 10.1093/bioinformatics/btw049

By:

Arandjelović, Ognjen

Publication type:

Article