Works matching IS 13674803 AND DT 2016 AND VI 32 AND IP 1

Results: 26

A non-negative matrix factorization method for detecting modules in heterogeneous omics multi-modal data.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 1, doi. 10.1093/bioinformatics/btv544

By:

Zi Yang;
Michailidis, George

Publication type:

Article

Two-pass alignment improves novel splice junction quantification.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 43, doi. 10.1093/bioinformatics/btv642

By:

Veeneman, Brendan A.;
Shukla, Sudhanshu;
Dhanasekaran, Saravana M.;
Chinnaiyan, Arul M.;
Nesvizhskii, Alexey I.

Publication type:

Article

Human cell structure-driven model construction for predicting protein subcellular location from biological images.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 114, doi. 10.1093/bioinformatics/btv521

By:

Wei Shao;
Mingxia Liu;
Daoqiang Zhang

Publication type:

Article

CD30 cell graphs of Hodgkin lymphoma are not scale-free--an image analysis approach.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 122, doi. 10.1093/bioinformatics/btv542

By:

Schäfer, Hendrik;
Schäfer, Tim;
Ackermann, Jörg;
Dichter, Norbert;
Döring, Claudia;
Hartmann, Sylvia;
Hansmann, Martin-Leo;
Koch, Ina

Publication type:

Article

A robust AMMI model for the analysis of genotype-by-environment data.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 58, doi. 10.1093/bioinformatics/btv533

By:

Rodrigues, Paulo C.;
Monteiro, Andreia;
Lourenço, Vanda M.

Publication type:

Article

CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 133, doi. 10.1093/bioinformatics/btv547

By:

Packer, Jonathan S.;
Maxwell, Evan K.;
O'Dushlaine, Colm;
Lopez, Alexander E.;
Dewey, Frederick E.;
Chernomorsky, Rostislav;
Baras, Aris;
Overton, John D.;
Habegger, Lukas;
Reid, Jeffrey G.

Publication type:

Article

BamHash: a checksum program for verifying the integrity of sequence data.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 140, doi. 10.1093/bioinformatics/btv539

By:

Óskarsdóttir, Arna;
Másson, Gísli;
Melsted, Páll

Publication type:

Article

Large-scale extraction of gene interactions from full-text literature using DeepDive.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 106, doi. 10.1093/bioinformatics/btv476

By:

Mallory, Emily K.;
Ce Zhang;
Ré, Christopher;
Altman, Russ B.

Publication type:

Article

SHAPE directed RNA folding.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 145, doi. 10.1093/bioinformatics/btv523

By:

Lorenz, Ronny;
Luntzer, Dominik;
Hofacker, Ivo L.;
Stadler, Peter F.;
Wolfinger, Michael T.

Publication type:

Article

Group and sparse group partial least square approaches applied in genomics context.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 35, doi. 10.1093/bioinformatics/btv535

By:

Liquet, Benoît;
de Micheaux, Pierre Lafaye;
Hejblum, Boris P.;
Thiébaut, Rodolphe

Publication type:

Article

NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 142, doi. 10.1093/bioinformatics/btv540

By:

Leggett, Richard M.;
Heavens, Darren;
Caccamo, Mario;
Clark, Matthew D.;
Davey, Robert P.

Publication type:

Article

Inferred miRNA activity identifies miRNA-mediated regulatory networks underlying multiple cancers.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 96, doi. 10.1093/bioinformatics/btv531

By:

Eunjee Lee;
Koichi Ito;
Yong Zhao;
Schadt, Eric E.;
Irie, Hanna Y.;
Jun Zhu

Publication type:

Article

Hammock: a hidden Markov model-based peptide clustering algorithm to identify protein-interaction consensus motifs in large datasets.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 9, doi. 10.1093/bioinformatics/btv522

By:

Krejci, Adam;
Hupp, Ted R.;
Lexa, Matej;
Vojtesek, Borivoj;
Muller, Petr

Publication type:

Article

ICT: isotope correction toolbox.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 154, doi. 10.1093/bioinformatics/btv514

By:

Jungreuthmayer, Christian;
Neubauer, Stefan;
Mairinger, Teresa;
Zanghellini, Jürgen;
Hann, Stephan

Publication type:

Article

Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 50, doi. 10.1093/bioinformatics/btv517

By:

Kevin He;
Yanming Li;
Ji Zhu;
Hongliang Liu;
Lee, Jeffrey E.;
Amos, Christopher I.;
Hyslop, Terry;
Jiashun Jin;
Huazhen Lin;
Qinyi Wei;
Yi Li

Publication type:

Article

SeDuS: segmental duplication simulator.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 148, doi. 10.1093/bioinformatics/btv481

By:

Hartasánchez, Diego A.;
Brasó-Vives, Marina;
Fuentes-Díaz, Juanma;
Vallès-Codina, Oriol;
Navarro, Arcadi

Publication type:

Article

PyPDB: a Python API for the Protein Data Bank.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 159, doi. 10.1093/bioinformatics/btv543

By:

Gilpin, William

Publication type:

Article

An algorithm for automated layout of process description maps drawn in SBGN.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 77, doi. 10.1093/bioinformatics/btv516

By:

Genc, Begum;
Dogrusoz, Ugur

Publication type:

Article

Inter-functional analysis of high-throughput phenotype data by non-parametric clustering and its application to photosynthesis.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 67, doi. 10.1093/bioinformatics/btv515

By:

Qiaozi Gao;
Ostendorf, Elisabeth;
Cruz, Jeffrey A.;
Rong Jin;
Kramer, David M.;
Jin Chen

Publication type:

Article

P-SAMS: a web site for plant artificial microRNA and synthetic trans-acting small interfering RNA design.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 157, doi. 10.1093/bioinformatics/btv534

By:

Fahlgren, Noah;
Hill, Steven T.;
Carrington, James C.;
Carbonell, Alberto

Publication type:

Article

ResiCon: a method for the identification of dynamic domains, hinges and interfacial regions in proteins.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 25, doi. 10.1093/bioinformatics/btv525

By:

Dziubiński, Maciej;
Daniluk, Paweł;
Lesyng, Bogdan

Publication type:

Article

markophylo: Markov chain analysis on phylogenetic trees.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 130, doi. 10.1093/bioinformatics/btv541

By:

Dang, Utkarsh J.;
Golding, G. Brian

Publication type:

Article

Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 85, doi. 10.1093/bioinformatics/btv529

By:

Cortés-Ciriano, Isidro;
van Westen, Gerard J. P.;
Bouvier, Guillaume;
Nilges, Michael;
Overington, John P.;
Bender, Andreas;
Malliavin, Thérèse E.

Publication type:

Article

DIVAS: a centralized genetic variant repository representing 150 000 individuals from multiple disease cohorts.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 151, doi. 10.1093/bioinformatics/btv511

By:

Wei-Yi Cheng;
Hakenberg, Jörg;
Shuyu Dan Li;
Rong Chen

Publication type:

Article

ScaffoldScaffolder: solving contig orientation via bidirected to directed graph reduction.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 17, doi. 10.1093/bioinformatics/btv548

By:

Bodily, Paul M.;
Fujimoto, M. Stanley;
Snell, Quinn;
Ventura, Dan;
Clement, Mark J.

Publication type:

Article

RNF: a general framework to evaluate NGS read mappers.

Published in:

Bioinformatics, 2016, v. 32, n. 1, p. 136, doi. 10.1093/bioinformatics/btv524

By:

Břinda, Karel;
Boeva, Valentina;
Kucherov, Gregory

Publication type:

Article