Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 8

Results: 36

Erratum.

Published in:: 2015
Publication type:: Correction Notice

HYCUD: a computational tool for prediction of effective rotational correlation time in flexible proteins.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1319, doi. 10.1093/bioinformatics/btu824

By:

Rezaei-Ghaleh, Nasrollah;
Klama, Frederik;
Munari, Francesca;
Zweckstetter, Markus

Publication type:

Article

NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1325, doi. 10.1093/bioinformatics/btu830

By:

Woonghee Lee;
Tonelli, Marco;
Markley, John L.

Publication type:

Article

Sputnik: ad hoc distributed computation.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1298, doi. 10.1093/bioinformatics/btu818

By:

Völkel, Gunnar;
Lausser, Ludwig;
Schmid, Florian;
Kraus, Johann M.;
Kestler, Hans A.

Publication type:

Article

Phy-Mer: a novel alignment-free and reference-independent mitochondrial haplogroup classifier.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1310, doi. 10.1093/bioinformatics/btu825

By:

Navarro-Gomez, Daniel;
Leipzig, Jeremy;
Lishuang Shen;
Lott, Marie;
Stassen, Alphons P. M.;
Wallace, Douglas C.;
Wiggs, Janey L.;
Falk, Marni J.;
van Oven, Mannis;
Xiaowu Gai

Publication type:

Article

GSDS 2.0: an upgraded gene feature visualization server.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1296, doi. 10.1093/bioinformatics/btu817

By:

Bo Hu;
Jinpu Jin;
An-Yuan Guo;
He Zhang;
Jingchu Luo;
Ge Gao

Publication type:

Article

3Dmol.js: molecular visualization with WebGL.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1322, doi. 10.1093/bioinformatics/btu829

By:

Rego, Nicholas;
Koes, David

Publication type:

Article

SNiPA: an interactive, genetic variant-centered annotation browser.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1334, doi. 10.1093/bioinformatics/btu779

By:

Arnold, Matthias;
Raffler, Johannes;
Pfeufer, Arne;
Suhre, Karsten;
Kastenmüller, Gabi

Publication type:

Article

Detection of circular permutations within protein structures using CE-CP.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1316, doi. 10.1093/bioinformatics/btu823

By:

Bliven, Spencer E.;
Bourne, Philip E.;
Prlic, Andreas

Publication type:

Article

repDNA: a Python package to generate various modes of feature vectors for DNA sequences by incorporating user-defined physicochemical properties and sequence-order effects.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1307, doi. 10.1093/bioinformatics/btu820

By:

Bin Liu;
Fule Liu;
Longyun Fang;
Xiaolong Wang;
Kuo-Chen Chou

Publication type:

Article

JEPEG: a summary statistics based tool for gene-level joint testing of functional variants.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1176, doi. 10.1093/bioinformatics/btu816

By:

Donghyung Lee;
Williamson, Vernell S.;
Bigdeli, T. Bernard;
Riley, Brien P.;
Fanous, Ayman H.;
Vladimirov, Vladimir I.;
Bacanu, Silviu-Alin

Publication type:

Article

andi: Fast and accurate estimation of evolutionary distances between closely related genomes.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1169, doi. 10.1093/bioinformatics/btu815

By:

Haubold, Bernhard;
Klotzl, Fabian;
Pfaffelhuber, Peter

Publication type:

Article

MpTheory Java library: a multi-platform Java library for systems biology based on the Metabolic P theory.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1328, doi. 10.1093/bioinformatics/btu814

By:

Marchetti, Luca;
Manca, Vincenzo

Publication type:

Article

Identifying cancer-related microRNAs based on gene expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1226, doi. 10.1093/bioinformatics/btu811

By:

Xing-Ming Zhao;
Ke-Qin Liu;
Guanghui Zhu;
Feng He;
Duval, Beatrice;
Richer, Jean-Michel;
De-Shuang Huang;
Chang-Jun Jiang;
Jin-Kao Hao;
Luonan Chen

Publication type:

Article

State of the art prediction of HIV-1 protease cleavage sites.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1204, doi. 10.1093/bioinformatics/btu810

By:

Rögnvaldsson, Thorsteinn;
Liwen You;
Garwicz, Daniel

Publication type:

Article

ICMA: an integrated cardiac modeling and analysis platform.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1331, doi. 10.1093/bioinformatics/btu809

By:

Hussan, Jagir R.;
Hunter, Peter J.;
Gladding, Patrick A.;
Greenberg, Neil;
Christie, Richard;
Wu, Alan;
Sorby, Hugh;
Thomas, James D.

Publication type:

Article

flowCL: ontology-based cell population labelling in flow cytometry.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1337, doi. 10.1093/bioinformatics/btu807

By:

Courtot, Mélanie;
Meskas, Justin;
Diehl, Alexander D.;
Droumeva, Radina;
Gottardo, Raphael;
Jalali, Adrin;
Taghiyar, Mohammad Jafar;
Maecker, Holden T.;
McCoy, J. Philip;
Ruttenberg, Alan;
Scheuermann, Richard H.;
Brinkman, Ryan R.

Publication type:

Article

Kablammo: an interactive, web-based BLAST results visualizer.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1305, doi. 10.1093/bioinformatics/btu808

By:

Wintersinger, Jeff A.;
Wasmuth, James D.

Publication type:

Article

Improved gene tree error correction in the presence of horizontal gene transfer.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1211, doi. 10.1093/bioinformatics/btu806

By:

Bansa, Mukul S.;
Yi-Chieh Wu;
Alm, Eric J.;
Kellis, Manolis

Publication type:

Article

Semiconductor sequencing: how many flows do you need?

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1199, doi. 10.1093/bioinformatics/btu805

By:

Budczies, Jan;
Bockmayr, Michael;
Treue, Denise;
Klauschen, Frederick;
Denkert, Carsten

Publication type:

Article

SNPlice: variants that modulate Intron retention from RNA-sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1191, doi. 10.1093/bioinformatics/btu804

By:

Mudvari, Prakriti;
Movassagh, Mercedeh;
Kowsari, Kamran;
Seyfi, Ali;
Kokkinaki, Maria;
Edwards, Nathan J.;
Golestaneh, Nady;
Horvath, Anelia

Publication type:

Article

GenomeCons: a web server for manipulating multiple genome sequence alignments and their consensus sequences.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1293, doi. 10.1093/bioinformatics/btu803

By:

Tetsuya Sato;
Mikita Suyama

Publication type:

Article

QuASAR: quantitative allele-specific analysis of reads.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1235, doi. 10.1093/bioinformatics/btu802

By:

Harvey, Chris T.;
Moyerbrailean, Gregory A.;
Davis, Gordon O.;
Xiaoquan Wen;
Luca, Francesca;
Pique-Regi, Roger

Publication type:

Article

HIPPIE: a high-throughput identification pipeline for promoter interacting enhancer elements.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1290, doi. 10.1093/bioinformatics/btu801

By:

Yih-Chii Hwang;
Chiao-Feng Lin;
Valladares, Otto;
Malamon, John;
Kuksa, Pavel P.;
Qi Zheng;
Gregory, Brian D.;
Li-San Wang

Publication type:

Article

SMARTS: reconstructing disease response networks from multiple individuals using time series gene expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1250, doi. 10.1093/bioinformatics/btu800

By:

Wise, Aaron;
Bar-Joseph, Ziv

Publication type:

Article

Graphical algorithm for integration of genetic and biological data: proof of principle using psoriasis as a model.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1243, doi. 10.1093/bioinformatics/btu799

By:

Tsoi, Lam C.;
Elder, James T.;
Abecasis, Goncalo R.

Publication type:

Article

GenePainter v. 2.0 resolves the taxonomic distribution of intron positions.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1302, doi. 10.1093/bioinformatics/btu798

By:

Mühlhausen, Stefanie;
Hellkamp, Marcel;
Kollmar, Martin

Publication type:

Article

Exploiting hidden information interleaved in the redundancy of the genetic code without prior knowledge.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1161, doi. 10.1093/bioinformatics/btu797

By:

Zur, Hadas;
Tuller, Tamir

Publication type:

Article

Population-based structural variation discovery with Hydra-Multi.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1286, doi. 10.1093/bioinformatics/btu771

By:

Lindberg, Michael R.;
Hall, Ira M.;
Quinlan, Aaron R.

Publication type:

Article

Computer-assisted curation of a human regulatory core network from the biological literature.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1258, doi. 10.1093/bioinformatics/btu795

By:

Thomas, Philippe;
Durek, Pawel;
Solt, Illés;
Klinger, Bertram;
Witzel, Franziska;
Schulthess, Pascal;
Mayer, Yvonne;
Tikk, Domonkos;
Blüthgen, Nils;
Leser, Ulf

Publication type:

Article

Clustering-based model of cysteine co-evolution improves disulfide bond connectivity prediction and reduces homologous sequence requirements.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1219, doi. 10.1093/bioinformatics/btu794

By:

Raimondi, Daniele;
Orlando, Gabriele;
Vranken, Wim F.

Publication type:

Article

Adaptive settings for the nearest-neighbor particle tracking algorithm.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1279, doi. 10.1093/bioinformatics/btu793

By:

Mazzaferri, Javier;
Roy, Joannie;
Lefrancois, Stephane;
Costantino, Santiago

Publication type:

Article

Retrieval of Enterobacteriaceae drug targets using singular value decomposition.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1267, doi. 10.1093/bioinformatics/btu792

By:

Silvério-Machado, Rita;
Couto, Bráulio R. G. M.;
Santos, Marcos A. dos

Publication type:

Article

PEASE: predicting B-cell epitopes utilizing antibody sequence.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1313, doi. 10.1093/bioinformatics/btu790

By:

Sela-Culang, Inbal;
Ashkenazi, Shaul;
Peters, Bjoern;
Ofran, Yanay

Publication type:

Article

The chemical component dictionary: complete descriptions of constituent molecules in experimentally determined 3D macromolecules in the Protein Data Bank.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1274, doi. 10.1093/bioinformatics/btu789

By:

Westbrook, John D.;
Chenghua Shao;
Zukang Feng;
Zhuravleva, Marina;
Velankar, Sameer;
Young, Jasmine

Publication type:

Article

Faster sequence homology searches by clustering subsequences.

Published in:

Bioinformatics, 2015, v. 31, n. 8, p. 1183, doi. 10.1093/bioinformatics/btu780

By:

Shuji Suzuki;
Masanori Kakuta;
Takashi Ishida;
Yutaka Akiyama

Publication type:

Article