Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 4

Results: 32

Differential regulation enrichment analysis via the integration of transcriptional regulatory network and gene expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 563, doi. 10.1093/bioinformatics/btu672

By:

Ma, Shining;
Jiang, Tao;
Jiang, Rui

Publication type:

Article

Simple, rapid and accurate genotyping-by-sequencing from aligned whole genomes with ArrayMaker.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 599, doi. 10.1093/bioinformatics/btu691

By:

Willet, Cali E.;
Haase, Bianca;
Charleston, Michael A.;
Wade, Claire M.

Publication type:

Article

LICRE: unsupervised feature correlation reduction for lipidomics.

Published in:

2015

By:

Wong, Gerard;
Chan, Jeffrey;
Kingwell, Bronwyn A.;
Leckie, Christopher;
Meikle, Peter J.

Publication type:

Correction Notice

IntSide: a web server for the chemical and biological examination of drug side effects.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 612, doi. 10.1093/bioinformatics/btu688

By:

Juan-Blanco, Teresa;
Duran-Frigola, Miquel;
Aloy, Patrick

Publication type:

Article

Introducing dAUTObase: a first step towards the global scale geoepidemiology of autoimmune syndromes and diseases.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 581, doi. 10.1093/bioinformatics/btu690

By:

Gkantouna, Vassiliki A.;
Kambouris, Manousos E.;
Viennas, Emmanouil S.;
Ioannou, Zafeiria-Marina;
Paraskevas, Michael;
Lagoumintzis, George;
Zagoriti, Zoi;
Patrinos, George P.;
Tzimas, Giannis E.;
Poulas, Konstantinos

Publication type:

Article

Inter-species pathway perturbation prediction via data-driven detection of functional homology.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 501, doi. 10.1093/bioinformatics/btu570

By:

Hafemeister, Christoph;
Romero, Roberto;
Bilal, Erhan;
Meyer, Pablo;
Norel, Raquel;
Rhrissorrakrai, Kahn;
Bonneau, Richard;
Tarca, Adi L.

Publication type:

Article

Message from the ISCB: ISCB Ebola award for important future research on the computational biology of Ebola virus.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 616, doi. 10.1093/bioinformatics/btv019

By:

Karp, Peter D.;
Berger, Bonnie;
Kovats, Diane;
Lengauer, Thomas;
Linial, Michal;
Sabeti, Pardis;
Hide, Winston;
Rost, Burkhard

Publication type:

Article

A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 587, doi. 10.1093/bioinformatics/btu661

By:

Coil, David;
Jospin, Guillaume;
Darling, Aaron E.

Publication type:

Article

DIANA—algorithmic improvements for analysis of data-independent acquisition MS data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 555, doi. 10.1093/bioinformatics/btu686

By:

Teleman, Johan;
Röst, Hannes L;
Rosenberger, George;
Schmitt, Uwe;
Malmström, Lars;
Malmström, Johan;
Levander, Fredrik

Publication type:

Article

Accurate estimation of haplotype frequency from pooled sequencing data and cost-effective identification of rare haplotype carriers by overlapping pool sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 515, doi. 10.1093/bioinformatics/btu670

By:

Cao, Chang-Chang;
Sun, Xiao

Publication type:

Article

mimicMe: a web server for prediction and analysis of host-like proteins in microbial pathogens.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 590, doi. 10.1093/bioinformatics/btu681

By:

Petrenko, Pavel;
Doxey, Andrew C.

Publication type:

Article

flowDensity: reproducing manual gating of flow cytometry data by automated density-based cell population identification.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 606, doi. 10.1093/bioinformatics/btu677

By:

Malek, Mehrnoush;
Taghiyar, Mohammad Jafar;
Chong, Lauren;
Finak, Greg;
Gottardo, Raphael;
Brinkman, Ryan R.

Publication type:

Article

DOSE: an R/Bioconductor package for disease ontology semantic and enrichment analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 608, doi. 10.1093/bioinformatics/btu684

By:

Yu, Guangchuang;
Wang, Li-Gen;
Yan, Guang-Rong;
He, Qing-Yu

Publication type:

Article

Understanding the limits of animal models as predictors of human biology: lessons learned from the sbv IMPROVER Species Translation Challenge.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 471, doi. 10.1093/bioinformatics/btu611

By:

Rhrissorrakrai, Kahn;
Belcastro, Vincenzo;
Bilal, Erhan;
Norel, Raquel;
Poussin, Carine;
Mathis, Carole;
Dulize, Rémi H. J.;
Ivanov, Nikolai V.;
Alexopoulos, Leonidas;
Jeremy Rice, J.;
Peitsch, Manuel C.;
Stolovitzky, Gustavo;
Meyer, Pablo;
Hoeng, Julia

Publication type:

Article

Statistical significance of variables driving systematic variation in high-dimensional data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 545, doi. 10.1093/bioinformatics/btu674

By:

Chung, Neo Christopher;
Storey, John D.

Publication type:

Article

Seed: a user-friendly tool for exploring and visualizing microbial community data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 602, doi. 10.1093/bioinformatics/btu693

By:

Beck, Daniel;
Dennis, Christopher;
Foster, James A.

Publication type:

Article

Predicting protein phosphorylation from gene expression: top methods from the IMPROVER Species Translation Challenge.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 462, doi. 10.1093/bioinformatics/btu490

By:

Dayarian, Adel;
Romero, Roberto;
Wang, Zhiming;
Biehl, Michael;
Bilal, Erhan;
Hormoz, Sahand;
Meyer, Pablo;
Norel, Raquel;
Rhrissorrakrai, Kahn;
Bhanot, Gyan;
Luo, Feng;
Tarca, Adi L.

Publication type:

Article

piPipes: a set of pipelines for piRNA and transposon analysis via small RNA-seq, RNA-seq, degradome- and CAGE-seq, ChIP-seq and genomic DNA sequencing.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 593, doi. 10.1093/bioinformatics/btu647

By:

Han, Bo W.;
Wang, Wei;
Zamore, Phillip D.;
Weng, Zhiping

Publication type:

Article

Comment on ‘protein–protein binding affinity prediction from amino acid sequence’.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 614, doi. 10.1093/bioinformatics/btu682

By:

Moal, Iain H.;
Fernández-Recio, Juan

Publication type:

Article

Where are we at regarding species translation? A review of the sbv IMPROVER challenge.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 451, doi. 10.1093/bioinformatics/btv065

By:

Hoeng, J.;
Peitsch, M.C.;
Meyer, P.;
Jurisica, I.

Publication type:

Article

A crowd-sourcing approach for the construction of species-specific cell signaling networks.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 484, doi. 10.1093/bioinformatics/btu659

By:

Bilal, Erhan;
Sakellaropoulos, Theodore;
Participants, Challenge;
Melas, Ioannis N.;
Messinis, Dimitris E.;
Belcastro, Vincenzo;
Rhrissorrakrai, Kahn;
Meyer, Pablo;
Norel, Raquel;
Iskandar, Anita;
Blaese, Elise;
Rice, John J.;
Peitsch, Manuel C.;
Hoeng, Julia;
Stolovitzky, Gustavo;
Alexopoulos, Leonidas G.;
Poussin, Carine

Publication type:

Article

MOST: a software environment for constraint-based metabolic modeling and strain design.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 610, doi. 10.1093/bioinformatics/btu685

By:

Kelley, James J.;
Lane, Anatoliy;
Li, Xiaowei;
Mutthoju, Brahmaji;
Maor, Shay;
Egen, Dennis;
Lun, Desmond S.

Publication type:

Article

jNMFMA: a joint non-negative matrix factorization meta-analysis of transcriptomics data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 572, doi. 10.1093/bioinformatics/btu679

By:

Wang, Hong-Qiang;
Zheng, Chun-Hou;
Zhao, Xing-Ming

Publication type:

Article

FuncPatch: a web server for the fast Bayesian inference of conserved functional patches in protein 3D structures.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 523, doi. 10.1093/bioinformatics/btu673

By:

Huang, Yi-Fei;
Golding, G. Brian

Publication type:

Article

An efficient algorithm for the blocked pattern matching problem.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 532, doi. 10.1093/bioinformatics/btu678

By:

Deng, Fei;
Wang, Lusheng;
Liu, Xiaowen

Publication type:

Article

LIGSIFT: an open-source tool for ligand structural alignment and virtual screening.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 539, doi. 10.1093/bioinformatics/btu692

By:

Roy, Ambrish;
Skolnick, Jeffrey

Publication type:

Article

SYSBIONS: nested sampling for systems biology.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 604, doi. 10.1093/bioinformatics/btu675

By:

Johnson, Rob;
Kirk, Paul;
Stumpf, Michael P. H.

Publication type:

Article

miRseqViewer: multi-panel visualization of sequence, structure and expression for analysis of microRNA sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 596, doi. 10.1093/bioinformatics/btu676

By:

Jang, Insu;
Chang, Hyeshik;
Jun, Yukyung;
Park, Seongjin;
Yang, Jin Ok;
Lee, Byungwook;
Kim, Wankyu;
Kim, V. Narry;
Lee, Sanghyuk

Publication type:

Article

Inter-species prediction of protein phosphorylation in the sbv IMPROVER species translation challenge.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 453, doi. 10.1093/bioinformatics/btu407

By:

Biehl, Michael;
Sadowski, Peter;
Bhanot, Gyan;
Bilal, Erhan;
Dayarian, Adel;
Meyer, Pablo;
Norel, Raquel;
Rhrissorrakrai, Kahn;
Zeller, Michael D.;
Hormoz, Sahand

Publication type:

Article

Inter-species inference of gene set enrichment in lung epithelial cells from proteomic and large transcriptomic datasets.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 492, doi. 10.1093/bioinformatics/btu569

By:

Hormoz, Sahand;
Bhanot, Gyan;
Biehl, Michael;
Bilal, Erhan;
Meyer, Pablo;
Norel, Raquel;
Rhrissorrakrai, Kahn;
Dayarian, Adel

Publication type:

Article

E-MEM: efficient computation of maximal exact matches for very large genomes.

Published in:

Bioinformatics, 2015, v. 31, n. 4, p. 509, doi. 10.1093/bioinformatics/btu687

By:

Khiste, Nilesh;
Ilie, Lucian

Publication type:

Article

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity.

Published in:

2015

By:

Li, Yi;
Xie, Xiaohui

Publication type:

Correction Notice