Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 3

Results: 31

GeneNet Toolbox for MATLAB: a flexible platform for the analysis of gene connectivity in biological networks.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 442, doi. 10.1093/bioinformatics/btu669

By:

Taylor, Avigail;
Steinberg, Julia;
Andrews, Tallulah S.;
Webber, Caleb

Publication type:

Article

SNP-SIG 2013: the state of the art of genomic variant interpretation.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 449, doi. 10.1093/bioinformatics/btu415

By:

Bromberg, Yana;
Capriotti, Emidio

Publication type:

Article

OrthoInspector 2.0: Software and database updates.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 447, doi. 10.1093/bioinformatics/btu642

By:

Linard, Benjamin;
Allot, Alexis;
Schneider, Raphaël;
Morel, Can;
Ripp, Raymond;
Bigler, Marc;
Thompson, Julie D.;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

FungiFun2: a comprehensive online resource for systematic analysis of gene lists from fungal species.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 445, doi. 10.1093/bioinformatics/btu627

By:

Priebe, Steffen;
Kreisel, Christian;
Horn, Fabian;
Guthke, Reinhard;
Linde, Jörg

Publication type:

Article

NOVA: a software to analyze complexome profiling data.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 440, doi. 10.1093/bioinformatics/btu623

By:

Giese, Heiko;
Ackermann, Jörg;
Heide, Heinrich;
Bleier, Lea;
Dröse, Stefan;
Wittig, Ilka;
Brandt, Ulrich;
Koch, Ina

Publication type:

Article

VCF2Networks: applying genotype networks to single-nucleotide variants data.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 438, doi. 10.1093/bioinformatics/btu650

By:

Marco Dall'Olio, Giovanni;
Vahdati, Ali R.;
Bertranpetit, Jaume;
Wagner, Andreas;
Laayouni, Hafid

Publication type:

Article

Rcount: simple and flexible RNA-Seq read counting.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 436, doi. 10.1093/bioinformatics/btu680

By:

Schmid, Marc W.;
Grossniklaus, Ueli

Publication type:

Article

Tabhu: tools for antibody humanization.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 434, doi. 10.1093/bioinformatics/btu667

By:

Olimpieri, Pier Paolo;
Marcatili, Paolo;
Tramontano, Anna

Publication type:

Article

MulRF: a software package for phylogenetic analysis using multi-copy gene trees.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 432, doi. 10.1093/bioinformatics/btu648

By:

Chaudhary, Ruchi;
Fernández-Baca, David;
Burleigh, John Gordon

Publication type:

Article

ExomeAI: detection of recurrent allelic imbalance in tumors using whole-exome sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 429, doi. 10.1093/bioinformatics/btu665

By:

Nadaf, Javad;
Majewski, Jacek;
Fahiminiya, Somayyeh

Publication type:

Article

CompMap: a reference-based compression program to speed up read mapping to related reference sequences.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 426, doi. 10.1093/bioinformatics/btu656

By:

Zexuan Zhu;
Linsen Li;
Yongpeng Zhang;
Yanli Yang;
Xiao Yang

Publication type:

Article

The RNA shapes studio.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 423, doi. 10.1093/bioinformatics/btu649

By:

Janssen, Stefan;
Giegerich, Robert

Publication type:

Article

SIST: stress-induced structural transitions in superhelical DNA.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 421, doi. 10.1093/bioinformatics/btu657

By:

Zhabinskaya, Dina;
Madden, Sally;
Benham, Craig J.

Publication type:

Article

SNPsnap: a Web-based tool for identification and annotation of matched SNPs.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 418, doi. 10.1093/bioinformatics/btu655

By:

Pers, Tune H.;
Timshel, Pascal;
Hirschhorn, Joel N.

Publication type:

Article

DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 416, doi. 10.1093/bioinformatics/btu645

By:

Ames, Ryan M.;
Lovell, Simon C.

Publication type:

Article

WhopGenome: high-speed access to whole-genome variation and sequence data in R.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 413, doi. 10.1093/bioinformatics/btu636

By:

Wittelsbürger, Ulrich;
Pfeifer, Bastian;
Lercher, Martin J.

Publication type:

Article

PDB-wide collection of binding data: current status of the PDBbind database.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 405, doi. 10.1093/bioinformatics/btu626

By:

Zhihai Liu;
Yan Li;
Li Han;
Jie Li;
Jie Liu;
Zhixiong Zhao;
Wei Nie;
Yuchen Liu;
Renxiao Wang

Publication type:

Article

Deviance residuals-based sparse PLS and sparse kernel PLS regression for censored data.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 397, doi. 10.1093/bioinformatics/btu660

By:

Bastien, Philippe;
Bertrand, Frédéric;
Meyer, Nicolas;
Maumy-Bertrand, Myriam

Publication type:

Article

A stochastic automaton model for simulating kinesin processivity.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 390, doi. 10.1093/bioinformatics/btu664

By:

Khataee, Hamidreza;
Wee-Chung Liew, Alan

Publication type:

Article

PhosphoPICK: modelling cellular context to map kinase-substrate phosphorylation events.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 382, doi. 10.1093/bioinformatics/btu663

By:

Patrick, Ralph;
Lê Cao, Kim-Anh;
Kobe, Bostjan;
Bodén, Mikael

Publication type:

Article

Computing autocatalytic sets to unravel inconsistencies in metabolic network reconstructions.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 373, doi. 10.1093/bioinformatics/btu658

By:

Schmidt, Ralf;
Waschina, Silvio;
Boettger-Schmidt, Daniela;
Kost, Christian;
Kaleta, Christoph

Publication type:

Article

Genome measures used for quality control are dependent on gene function and ancestry.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 318, doi. 10.1093/bioinformatics/btu668

By:

Jing Wang;
Raskin, Leon;
Samuels, David C.;
Yu Shyr;
Yan Guo

Publication type:

Article

LocalAli: an evolutionary-based local alignment approach to identify functionally conserved modules in multiple networks.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 363, doi. 10.1093/bioinformatics/btu652

By:

Jialu Hu;
Reinert, Knut

Publication type:

Article

Visual workflows for <sup>13</sup>C-metabolic flux analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 346, doi. 10.1093/bioinformatics/btu585

By:

Nöh, Katharina;
Droste, Peter;
Wiechert, Wolfgang

Publication type:

Article

An alternative approach to multiple testing for methylation QTL mapping reduces the proportion of falsely identified CpGs.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 340, doi. 10.1093/bioinformatics/btu654

By:

Luijk, René;
Goeman, Jelle J.;
Slagboom, Eline P.;
Heijmans, Bastiaan T.;
van Zwet, Erik W.

Publication type:

Article

Integrative data analysis indicates an intrinsic disordered domain character of Argonaute-binding motifs.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 332, doi. 10.1093/bioinformatics/btu666

By:

Zielezinski, Andrzej;
Karlowski, Wojciech M.

Publication type:

Article

Log-odds sequence logos.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 324, doi. 10.1093/bioinformatics/btu634

By:

Yi-Kuo Yu;
Capra, John A.;
Stojmirović, Aleksandar;
Landsman, David;
Altschul, Stephen F.

Publication type:

Article

Inference of protein kinetics by stochastic modeling and simulation of fluorescence recovery after photobleaching experiments.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 355, doi. 10.1093/bioinformatics/btu619

By:

Rapsomaniki, Maria Anna;
Cinquemani, Eugenio;
Giakoumakis, Nickolaos Nikiforos;
Kotsantis, Panagiotis;
Lygeros, John;
Lygerou, Zoi

Publication type:

Article

Pooled assembly of marine metagenomic datasets: enriching annotation through chimerism.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 311, doi. 10.1093/bioinformatics/btu546

By:

Magasin, Jonathan D.;
Gerloff, Dietlind L.

Publication type:

Article

Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 306, doi. 10.1093/bioinformatics/btu671

By:

Vlasblom, James;
Zuberi, Khalid;
Rodriguez, Harold;
Arnold, Roland;
Gagarinova, Alla;
Deineko, Viktor;
Kumar, Ashwani;
Leung, Elisa;
Rizzolo, Kamran;
Samanfar, Bahram;
Chang, Luke;
Phanse, Sadhna;
Golshani, Ashkan;
Greenblatt, Jack F.;
Houry, Walid A.;
Emili, Andrew;
Morris, Quaid;
Bader, Gary;
Babu, Mohan

Publication type:

Article

Using the plurality of codon positions to identify deleterious variants in human exomes.

Published in:

Bioinformatics, 2015, v. 31, n. 3, p. 301, doi. 10.1093/bioinformatics/btu653

By:

Subramanian, Sankar

Publication type:

Article