Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 23

Results: 33

SurvCurv database and online survival analysis platform update.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3878, doi. 10.1093/bioinformatics/btv463

By:

Ziehm, Matthias;
Ivanov, Dobril K.;
Bhat, Aditi;
Partridge, Linda;
Thornton, Janet M.

Publication type:

Article

HHalign-Kbest: exploring sub-optimal alignments for remote homology comparative modeling.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3850, doi. 10.1093/bioinformatics/btv441

By:

Jinchao Yu;
Picord, Geraldine;
Tuffery, Pierre;
Guerois, Raphael

Publication type:

Article

DSviaDRM: an R package for estimating disease similarity via dysfunctional regulation mechanism.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3870, doi. 10.1093/bioinformatics/btv474

By:

Jing Yang;
Su-Juan Wu;
Yi-Xue Li;
Yuan-Yuan Li

Publication type:

Article

Accurate disulfide-bonding network predictions improve ab initio structure prediction of cysteine-rich proteins.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3773, doi. 10.1093/bioinformatics/btv459

By:

Jing Yang;
Bao-Ji He;
Jang, Richard;
Yang Zhang;
Hong-Bin Shen

Publication type:

Article

SuccFind: a novel succinylation sites online prediction tool via enhanced characteristic strategy.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3748, doi. 10.1093/bioinformatics/btv439

By:

Hao-Dong Xu;
Shao-Ping Shi;
Ping-Ping Wen;
Jian-Ding Qiu

Publication type:

Article

NAM: association studies in multiple populations.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3862, doi. 10.1093/bioinformatics/btv448

By:

Xavier, Alencar;
Shizhong Xu;
Muir, William M.;
Rainey, Katy Martin

Publication type:

Article

ERC analysis: web-based inference of gene function via evolutionary rate covariation.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3835, doi. 10.1093/bioinformatics/btv454

By:

Wolfe, Nicholas W.;
Clark, Nathan L.

Publication type:

Article

An efficient algorithm for the extraction of HGVS variant descriptions from sequences.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3751, doi. 10.1093/bioinformatics/btv443

By:

Vis, Jonathan K.;
Vermaat, Martijn;
Taschner, Peter E. M.;
Kok, Joost N.;
Laros, Jeroen F. J.

Publication type:

Article

A statistical approach to virtual cellular experiments: improved causal discovery using accumulation IDA (aIDA).

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3807, doi. 10.1093/bioinformatics/btv461

By:

Taruttis, Franziska;
Spang, Rainer;
Engelmann, Julia C.

Publication type:

Article

cyNeo4j: connecting Neo4j and Cytoscape.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3868, doi. 10.1093/bioinformatics/btv460

By:

Summer, Georg;
Kelder, Thomas;
Ono, Keiichiro;
Radonjic, Marijana;
Heymans, Stephane;
Demchak, Barry

Publication type:

Article

Identifying kinase dependency in cancer cells by integrating high-throughput drug screening and kinase inhibition data.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3799, doi. 10.1093/bioinformatics/btv427

By:

Ryall, Karen A.;
Jimin Shin;
Minjae Yoo;
Hinz, Trista K.;
Jihye Kim;
Jaewoo Kang;
Heasley, Lynn E.;
Aik Choon Tan

Publication type:

Article

AlignBucket: a tool to speed up 'all-against-all' protein sequence alignments optimizing length constraints.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3841, doi. 10.1093/bioinformatics/btv451

By:

Profiti, Giuseppe;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

PBAP: a pipeline for file processing and quality control of pedigree data with dense genetic markers.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3790, doi. 10.1093/bioinformatics/btv444

By:

Nato Jr, Alejandro Q.;
Chapman, Nicola H.;
Sohi, Harkirat K.;
Nguyen, Hiep D.;
Brkanac, Zoran;
Wijsman, Ellen M.

Publication type:

Article

Impact of normalization methods on high-throughput screening data with high hit rates and drug testing with dose-response data.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3815, doi. 10.1093/bioinformatics/btv455

By:

Mpindi, John-Patrick;
Swapnil, Potdar;
Dmitrii, Bychkov;
Jani, Saarela;
Saeed, Khalid;
Wennerberg, Krister;
Aittokallio, Tero;
Östling, Päivi;
Kallioniemi, Olli

Publication type:

Article

TIPR: transcription initiation pattern recognition on a genome scale.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3725, doi. 10.1093/bioinformatics/btv464

By:

Morton, Taj;
Weng-Keen Wong;
Megraw, Molly

Publication type:

Article

LoopIng: a template-based tool for predicting the structure of protein loops.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3767, doi. 10.1093/bioinformatics/btv438

By:

Messih, Mario Abdel;
Lepore, Rosalba;
Tramontano, Anna

Publication type:

Article

MEPSA: minimum energy pathway analysis for energy landscapes.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3853, doi. 10.1093/bioinformatics/btv453

By:

Marcos-Alcalde, Iñigo;
Setoain, Javier;
Mendieta-Moreno, Jesús I.;
Mendieta, Jesús;
Gómez-Puertas, Paulino

Publication type:

Article

Determining conserved metabolic biomarkers from a million database queries.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3721, doi. 10.1093/bioinformatics/btv475

By:

Kurczy, Michael E.;
Ivanisevic, Julijana;
Johnson, Caroline H.;
Uritboonthai, Winnie;
Linh Hoang;
Mingliang Fang;
Hicks, Matthew;
Aldebot, Anthony;
Rinehart, Duane;
Mellander, Lisa J.;
Tautenhahn, Ralf;
Patti, Gary J.;
Spilker, Mary E.;
Benton, H. Paul;
Siuzdak, Gary

Publication type:

Article

GMcloser: closing gaps in assemblies accurately with a likelihood-based selection of contig or long-read alignments.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3733, doi. 10.1093/bioinformatics/btv465

By:

Shunichi Kosugi;
Hideki Hirakawa;
Satoshi Tabata

Publication type:

Article

cgmisc: enhanced genome-wide association analyses and visualization.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3830, doi. 10.1093/bioinformatics/btv426

By:

Kierczak, Marcin;
Jabłońska, Jagoda;
Forsberg, Simon K. G.;
Bianchi, Matteo;
Tengvall, Katarina;
Pettersson, Mats;
Scholz, Veronika;
Meadows, Jennifer R. S.;
Jern, Patric;
Carlborg, Örjan;
Lindblad-Toh, Kerstin

Publication type:

Article

Mutadelic: mutation analysis using description logic inferencing capabilities.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3742, doi. 10.1093/bioinformatics/btv467

By:

Holford, Matthew E.;
Krauthammer, Michael

Publication type:

Article

Vizardous: interactive analysis of microbial populations with single cell resolution.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3875, doi. 10.1093/bioinformatics/btv468

By:

Helfrich, Stefan;
Azzouzi, Charaf E.;
Probst, Christopher;
Seiffarth, Johannes;
Grünberger, Alexander;
Wiechert, Wolfgang;
Kohlheyer, Dietrich;
Nö, Katharina

Publication type:

Article

MICC: an R package for identifying chromatin interactions from ChIA-PET data.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3832, doi. 10.1093/bioinformatics/btv445

By:

Chao He;
Zhang, Michael Q.;
Xiaowo Wang

Publication type:

Article

Correcting systematic bias and instrument measurement drift with mzRefinery.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3838, doi. 10.1093/bioinformatics/btv437

By:

Gibbons, Bryson C.;
Chambers, Matthew C.;
Monroe, Matthew E.;
Tabb, David L.;
Payne, Samuel H.

Publication type:

Article

Improving protein fold recognition with hybrid profiles combining sequence and structure evolution.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3782, doi. 10.1093/bioinformatics/btv462

By:

Ghouzam, Yassine;
Postic, Guillaume;
de Brevern, Alexandre G.;
Gelly, Jean-Christophe

Publication type:

Article

NRGsuite: a PyMOL plugin to perform docking simulations in real time using FlexAID.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3856, doi. 10.1093/bioinformatics/btv458

By:

Gaudreault, Francis;
Morency, Louis-Philippe;
Najmanovich, Rafael J.

Publication type:

Article

ASSIsT: an automatic SNP scoring tool for in- and outbreeding species.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3873, doi. 10.1093/bioinformatics/btv446

By:

Di Guardo, Mario;
Micheletti, Diego;
Bianco, Luca;
Koehorst-van Putten, Herma J. J.;
Longhi, Sara;
Costa, Fabrizio;
Aranzana, Maria J.;
Velasco, Riccardo;
Arús, Pere;
Troggio, Michela;
van de Weg, Eric W.

Publication type:

Article

BLSSpeller: exhaustive comparative discovery of conserved cis-regulatory elements.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3758, doi. 10.1093/bioinformatics/btv466

By:

De Witte, Dieter;
Van de Velde, Jan;
Decap, Dries;
Van Bel, Michiel;
Audenaert, Pieter;
Demeester, Piet;
Dhoedt, Bart;
Vandepoele, Klaas;
Fostier, Jan

Publication type:

Article

motifbreakR: an R/Bioconductor package for predicting variant effects at transcription factor binding sites.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3847, doi. 10.1093/bioinformatics/btv470

By:

Coetzee, Simon G.;
Coetzee, Gerhard A.;
Hazelett, Dennis J.

Publication type:

Article

stringgaussnet: from differentially expressed genes to semantic and Gaussian networks generation.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3865, doi. 10.1093/bioinformatics/btv450

By:

Chaplais, Emmanuel;
Garchon, Henri-Jean

Publication type:

Article

ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3844, doi. 10.1093/bioinformatics/btv456

By:

Bystry, Vojtech;
Agathangelidis, Andreas;
Bikos, Vasilis;
Sutton, Lesley Ann;
Baliakas, Panagiotis;
Hadzidimitriou, Anastasia;
Stamatopoulos, Kostas;
Darzentas, Nikos

Publication type:

Article

aRrayLasso: a network-based approach to microarray interconversion.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3859, doi. 10.1093/bioinformatics/btv469

By:

Brown, Adam S.;
Patel, Chirag J.

Publication type:

Article

OVA: integrating molecular and physical phenotype data from multiple biomedical domain ontologies with variant filtering for enhanced variant prioritization.

Published in:

Bioinformatics, 2015, v. 31, n. 23, p. 3822, doi. 10.1093/bioinformatics/btv473

By:

Antanaviciute, Agne;
Watson, Christopher M.;
Harrison, Sally M.;
Lascelles, Carolina;
Crinnion, Laura;
Markham, Alexander F.;
Bonthron, David T.;
Carr, Ian M.

Publication type:

Article