Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 22

Results: 31

Strategies to improve the performance of rare variant association studies by optimizing the selection of controls.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3577, doi. 10.1093/bioinformatics/btv457

By:

Na Zhu;
Heinrich, Verena;
Dickhaus, Thorsten;
Hecht, Jochen;
Robinson, Peter N.;
Mundlos, Stefan;
Kamphans, Tom;
Krawitz, Peter M.

Publication type:

Article

A Bayesian approach for structure learning in oscillating regulatory networks.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3617, doi. 10.1093/bioinformatics/btv414

By:

Banos, Daniel Trejo;
Millar, Andrew J.;
Sanguinetti, Guido

Publication type:

Article

Designing alternative splicing RNA-seq studies. Beyond generic guidelines.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3631, doi. 10.1093/bioinformatics/btv436

By:

Attolini, Camille Stephan-Otto;
PeÑa, Victor;
Rossell, David

Publication type:

Article

BackCLIP: a tool to identify common background presence in PAR-CLIP datasets.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3703, doi. 10.1093/bioinformatics/btv442

By:

Reyes-Herrera, P. H.;
Speck-Hernandez, C. A.;
Sierra, C. A.;
Herrera, S.

Publication type:

Article

Alternative preprocessing of RNA-Sequencing data in The Cancer Genome Atlas leads to improved analysis results.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3666, doi. 10.1093/bioinformatics/btv377

By:

Rahman, Mumtahena;
Jackson, Laurie K.;
Johnson, W. Evan;
Li, Dean Y.;
Bild, Andrea H.;
Piccolo, Stephen R.

Publication type:

Article

Roary: rapid large-scale prokaryote pan genome analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3691, doi. 10.1093/bioinformatics/btv421

By:

Page, Andrew J.;
Cummins, Carla A.;
Hunt, Martin;
Wong, Vanessa K.;
Reuter, Sandra;
Holden, Matthew T. G.;
Fookes, Maria;
Falush, Daniel;
Keane, Jacqueline A.;
Parkhill, Julian

Publication type:

Article

GeneCOST: a novel scoring-based prioritization framework for identifying disease causing genes.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3715, doi. 10.1093/bioinformatics/btv424

By:

Ozer, Bugra;
Sagıroglu, Mahmut;
Demirci, Hüseyin

Publication type:

Article

Canonical, stable, general mapping using context schemes.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3569, doi. 10.1093/bioinformatics/btv435

By:

Novak, Adam M.;
Rosen, Yohei;
Haussler, David;
Paten, Benedict

Publication type:

Article

SNPGenie: estimating evolutionary parameters to detect natural selection using pooled next-generation sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3709, doi. 10.1093/bioinformatics/btv449

By:

Nelson, Chase W.;
Moncla, Louise H.;
Hughes, Austin L.

Publication type:

Article

The application of a novel 'rising activity, multi-level mixed effects, indicator emphasis' (RAMMIE) method for syndromic surveillance in England.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3660, doi. 10.1093/bioinformatics/btv418

By:

Morbey, Roger A.;
Elliot, Alex J.;
Charlett, Andre;
Verlander, Neville Q.;
Andrews, Nick;
Smith, Gillian E.

Publication type:

Article

Identifying novel associations between small molecules and miRNAs based on integrated molecular networks.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3638, doi. 10.1093/bioinformatics/btv417

By:

Yingli Lv;
Shuyuan Wang;
Fanlin Meng;
Lei Yang;
Zhifeng Wang;
Jing Wang;
Xiaowen Chen;
Wei Jiang;
Yixue Li;
Xia Li

Publication type:

Article

WATCLUST: a tool for improving the design of drugs based on protein-water interactions.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3697, doi. 10.1093/bioinformatics/btv411

By:

Ló pez, Elias D.;
Arcon, Juan Pablo;
Gauto, Diego F.;
Petruk, Ariel A.;
Modenutti, Carlos P.;
Dumas, Victoria G.;
Marti, Marcelo A.;
Turjanski, Adrian G.

Publication type:

Article

SynLinker: an integrated system for designing linkers and synthetic fusion proteins.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3700, doi. 10.1093/bioinformatics/btv447

By:

Chengcheng Liu;
Ju Xin Chin;
Dong-Yup Lee

Publication type:

Article

CRISPR-ERA: a comprehensive design tool for CRISPR-mediated gene editing, repression and activation.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3676, doi. 10.1093/bioinformatics/btv423

By:

Honglei Liu;
Zheng Wei;
Dominguez, Antonia;
Yanda Li;
Xiaowo Wang;
Qi, Lei S.

Publication type:

Article

FermiKit: assembly-based variant calling for Illumina resequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3694, doi. 10.1093/bioinformatics/btv440

By:

Heng Li

Publication type:

Article

CEMAsuite: open source degenerate PCR primer design.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3688, doi. 10.1093/bioinformatics/btv420

By:

Lane, Courtney E.;
Hulgan, Daniel;
O'Quinn, Kelly;
Benton, Michael G.

Publication type:

Article

Statistically identifying tumor suppressors and oncogenes from pan-cancer genome-sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3561, doi. 10.1093/bioinformatics/btv430

By:

Kumar, Runjun D.;
Searleman, Adam C.;
Swamidass, S. Joshua;
Griffith, Obi L.;
Bose, Ron

Publication type:

Article

High-order neural networks and kernel methods for peptide-MHC binding prediction.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3600, doi. 10.1093/bioinformatics/btv371

By:

Kuksa, Pavel P.;
Min, Martin Renqiang;
Dugar, Rishabh;
Gerstein, Mark

Publication type:

Article

A mutation profile for top-k patient search exploiting Gene-Ontology and orthogonal non-negative matrix factorization.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3653, doi. 10.1093/bioinformatics/btv409

By:

Sungchul Kim;
Lee Sael;
Hwanjo Yu

Publication type:

Article

TEtranscripts: a package for including transposable elements in differential expression analysis of RNA-seq datasets.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3593, doi. 10.1093/bioinformatics/btv422

By:

Ying Jin;
Tam, Oliver H.;
Paniagua, Eric;
Hammell, Molly

Publication type:

Article

RxnSim: a tool to compare biochemical reactions.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3712, doi. 10.1093/bioinformatics/btv416

By:

Giri, Varun;
Sivakumar, Tadi Venkata;
Kwang Myung Cho;
Tae Yong Kim;
Bhaduri, Anirban

Publication type:

Article

GeneVetter: a web tool for quantitative monogenic assessment of rare diseases.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3682, doi. 10.1093/bioinformatics/btv432

By:

Gillies, Christopher E.;
Robertson, Catherine C.;
Sampson, Matthew G.;
Hyun Min Kang

Publication type:

Article

Statistical models for RNA-seq data derived from a two-condition 48-replicate experiment.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3625, doi. 10.1093/bioinformatics/btv425

By:

Gierlié ski, Marek;
Cole, Christian;
Schofield, Pietà;
Schurch, Nicholas J.;
Sherstnev, Alexander;
Singh, Vijender;
Wrobel, Nicola;
Gharbi, Karim;
Simpson, Gordon;
Owen-Hughes, Tom;
Blaxter, Mark;
Barton, Geoffrey J.

Publication type:

Article

SomaticSignatures: inferring mutational signatures from single-nucleotide variants.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3673, doi. 10.1093/bioinformatics/btv408

By:

Gehring, Julian S.;
Fischer, Bernd;
Lawrence, Michael;
Huber, Wolfgang

Publication type:

Article

dendextend: an R package for visualizing, adjusting and comparing trees of hierarchical clustering.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3718, doi. 10.1093/bioinformatics/btv428

By:

Galili, Tal

Publication type:

Article

ClicO FS: an interactive web-based service of Circos.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3685, doi. 10.1093/bioinformatics/btv433

By:

Wei-Hien Cheong;
Yung-Chie Tan;
Soon-Joo Yap;
Kee-Peng Ng

Publication type:

Article

MetTailor: dynamic block summary and intensity normalization for robust analysis of mass spectrometry data in metabolomics.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3645, doi. 10.1093/bioinformatics/btv434

By:

Gengbo Chen;
Liang Cui;
Guo Shou Teo;
Choon Nam Ong;
Chuen Seng Tan;
Hyungwon Choi

Publication type:

Article

The MI bundle: enabling network and structural biology in genome visualization tools.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3679, doi. 10.1093/bioinformatics/btv431

By:

Céol, Arnaud;
Müller, Heiko

Publication type:

Article

Spaced seeds improve k-mer-based metagenomic classification.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3584, doi. 10.1093/bioinformatics/btv419

By:

Břinda, Karel;
Sykulski, Maciej;
Kucherov, Gregory

Publication type:

Article

Generation of sequence-based data for pedigree-segregating Mendelian or Complex traits.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3706, doi. 10.1093/bioinformatics/btv412

By:

Biao Li;
Wang, Gao T.;
Leal, Suzanne M.

Publication type:

Article

Mapping networks of light-dark transition in LOV photoreceptors.

Published in:

Bioinformatics, 2015, v. 31, n. 22, p. 3608, doi. 10.1093/bioinformatics/btv429

By:

Kaur Grewal, Rajdeep;
Mitra, Devrani;
Roy, Soumen

Publication type:

Article