Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 2

Results: 32

ExportAid: database of RNA elements regulating nuclear RNA export in mammals.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 246, doi. 10.1093/bioinformatics/btu620

By:

Giulietti, Matteo;
Milantoni, Sara Armida;
Armeni, Tatiana;
Principato, Giovanni;
Piva, Francesco

Publication type:

Article

NAIL, a software toolset for inferring, analyzing and visualizing regulatory networks.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 277, doi. 10.1093/bioinformatics/btu612

By:

Hurley, Daniel G.;
Cursons, Joseph;
Wang, Yi Kan;
Budden, David M.;
Print, Cristin G.;
Crampin, Edmund J.

Publication type:

Article

Rcpi: R/Bioconductor package to generate various descriptors of proteins, compounds and their interactions.

Published in:

2015

By:

Cao, Dong-Sheng;
Xiao, Nan;
Xu, Qing-Song;
Chen, Alex F.

Publication type:

Product Review

Shiny-phyloseq: Web application for interactive microbiome analysis with provenance tracking.

Published in:

2015

By:

McMurdie, Paul J.;
Holmes, Susan

Publication type:

Product Review

PIP-DB: the Protein Isoelectric Point database.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 295, doi. 10.1093/bioinformatics/btu637

By:

Bunkute, Egle;
Cummins, Christopher;
Crofts, Fraser J.;
Bunce, Gareth;
Nabney, Ian T.;
Flower, Darren R.

Publication type:

Article

A Python package for parsing, validating, mapping and formatting sequence variants using HGVS nomenclature.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 268, doi. 10.1093/bioinformatics/btu630

By:

Hart, Reece K.;
Rico, Rudolph;
Hare, Emily;
Garcia, John;
Westbrook, Jody;
Fusaro, Vincent A.

Publication type:

Article

KDDN: an open-source Cytoscape app for constructing differential dependency networks with significant rewiring.

Published in:

2015

By:

Tian, Ye;
Zhang, Bai;
Hoffman, Eric P.;
Clarke, Robert;
Zhang, Zhen;
Shih, Ie-Ming;
Xuan, Jianhua;
Herrington, David M.;
Wang, Yue

Publication type:

Case Study

MTide: an integrated tool for the identification of miRNA–target interaction in plants.

Published in:

2015

By:

Zhang, Zhao;
Jiang, Li;
Wang, Jingjing;
Gu, Peizhen;
Chen, Ming

Publication type:

Product Review

METAINTER: meta-analysis of multiple regression models in genome-wide association studies.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 151, doi. 10.1093/bioinformatics/btu629

By:

Vaitsiakhovich, Tatsiana;
Drichel, Dmitriy;
Herold, Christine;
Lacour, André;
Becker, Tim

Publication type:

Article

BioVLAB-MMIA-NGS: microRNA–mRNA integrated analysis using high-throughput sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 265, doi. 10.1093/bioinformatics/btu614

By:

Chae, Heejoon;
Rhee, Sungmin;
Nephew, Kenneth P.;
Kim, Sun

Publication type:

Article

Translating bioinformatics in oncology: guilt-by-profiling analysis and identification of KIF18B and CDCA3 as novel driver genes in carcinogenesis.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 216, doi. 10.1093/bioinformatics/btu586

By:

Itzel, Timo;
Scholz, Peter;
Maass, Thorsten;
Krupp, Markus;
Marquardt, Jens U.;
Strand, Susanne;
Becker, Diana;
Staib, Frank;
Binder, Harald;
Roessler, Stephanie;
Wang, Xin Wei;
Thorgeirsson, Snorri;
Müller, Martina;
Galle, Peter R.;
Teufel, Andreas

Publication type:

Article

switchBox: an R package for k–Top Scoring Pairs classifier development.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 273, doi. 10.1093/bioinformatics/btu622

By:

Afsari, Bahman;
Fertig, Elana J.;
Geman, Donald;
Marchionni, Luigi

Publication type:

Article

Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 170, doi. 10.1093/bioinformatics/btu641

By:

Ahn, Tae-Hyuk;
Chai, Juanjuan;
Pan, Chongle

Publication type:

Article

LongTarget: a tool to predict lncRNA DNA-binding motifs and binding sites via Hoogsteen base-pairing analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 178, doi. 10.1093/bioinformatics/btu643

By:

He, Sha;
Zhang, Hai;
Liu, Haihua;
Zhu, Hao

Publication type:

Article

PhaseTank: genome-wide computational identification of phasiRNAs and their regulatory cascades.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 284, doi. 10.1093/bioinformatics/btu628

By:

Guo, Qingli;
Qu, Xiongfei;
Jin, Weibo

Publication type:

Article

PROPER: comprehensive power evaluation for differential expression using RNA-seq.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 233, doi. 10.1093/bioinformatics/btu640

By:

Wu, Hao;
Wang, Chi;
Wu, Zhijin

Publication type:

Article

Hybrid Bayesian-rank integration approach improves the predictive power of genomic dataset aggregation.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 209, doi. 10.1093/bioinformatics/btu518

By:

Badgeley, Marcus A.;
Sealfon, Stuart C.;
Chikina, Maria D.

Publication type:

Article

Comprehensive large-scale assessment of intrinsic protein disorder.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 201, doi. 10.1093/bioinformatics/btu625

By:

Walsh, Ian;
Giollo, Manuel;
Di Domenico, Tomás;
Ferrari, Carlo;
Zimmermann, Olav;
Tosatto, Silvio C. E.

Publication type:

Article

Consensus Genotyper for Exome Sequencing (CGES): improving the quality of exome variant genotypes.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 187, doi. 10.1093/bioinformatics/btu591

By:

Trubetskoy, Vassily;
Rodriguez, Alex;
Dave, Uptal;
Campbell, Nicholas;
Crawford, Emily L.;
Cook, Edwin H.;
Sutcliffe, James S.;
Foster, Ian;
Madduri, Ravi;
Cox, Nancy J.;
Davis, Lea K.

Publication type:

Article

PFP/ESG: automated protein function prediction servers enhanced with Gene Ontology visualization tool.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 271, doi. 10.1093/bioinformatics/btu646

By:

Khan, Ishita K.;
Wei, Qing;
Chitale, Meghana;
Kihara, Daisuke

Publication type:

Article

GLAD: a mixed-membership model for heterogeneous tumor subtype classification.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 225, doi. 10.1093/bioinformatics/btu618

By:

Saddiki, Hachem;
McAuliffe, Jon;
Flaherty, Patrick

Publication type:

Article

PINBPA: Cytoscape app for network analysis of GWAS data.

Published in:

2015

By:

Wang, Lili;
Matsushita, Takuya;
Madireddy, Lohith;
Mousavi, Parvin;
Baranzini, Sergio E.

Publication type:

Product Review

EUROCarbDB(CCRC): a EUROCarbDB node for storing glycomics standard data.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 242, doi. 10.1093/bioinformatics/btu609

By:

Al Jadda, Khalifeh;
Porterfield, Melody P.;
Bridger, Robert;
Heiss, Christian;
Tiemeyer, Michael;
Wells, Lance;
Miller, John A.;
York, William S.;
Ranzinger, Rene

Publication type:

Article

PHI-DAC: protein homology database through dihedral angle conservation.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 292, doi. 10.1093/bioinformatics/btu617

By:

Maatuk, Noa;
Glantz-Gashai, Yitav;
Rotman, Maya;
Baydany, Meirav;
Fonar, Gennadiy;
Shechvitz, Amir;
Shemer, Karin;
Peleg, Aviva;
Reuveni, Eli;
Samson, Abraham O.

Publication type:

Article

Curation, integration and visualization of bacterial virulence factors in PATRIC.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 252, doi. 10.1093/bioinformatics/btu631

By:

Mao, Chunhong;
Abraham, David;
Wattam, Alice R.;
Wilson, Meredith J.C.;
Shukla, Maulik;
Yoo, Hyun Seung;
Sobral, Bruno W.

Publication type:

Article

The Bioinformatics Open Source Conference (BOSC) 2013.

Published in:

2015

By:

Harris, Nomi L.;
Cock, Peter J. A.;
Chapman, Brad A.;
Goecks, Jeremy;
Hotz, Hans-Rudolf;
Lapp, Hilmar

Publication type:

Proceeding

Proteomic analysis and prediction of human phosphorylation sites in subcellular level reveal subcellular specificity.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 194, doi. 10.1093/bioinformatics/btu598

By:

Chen, Xiang;
Shi, Shao-Ping;
Suo, Sheng-Bao;
Xu, Hao-Dong;
Qiu, Jian-Ding

Publication type:

Article

EasyStrata: evaluation and visualization of stratified genome-wide association meta-analysis data.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 259, doi. 10.1093/bioinformatics/btu621

By:

Winkler, Thomas W.;
Kutalik, Zoltan;
Gorski, Mathias;
Lottaz, Claudio;
Kronenberg, Florian;
Heid, Iris M.

Publication type:

Article

A two-stage statistical procedure for feature selection and comparison in functional analysis of metagenomes.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 158, doi. 10.1093/bioinformatics/btu635

By:

Pookhao, Naruekamol;
Sohn, Michael B.;
Li, Qike;
Jenkins, Isaac;
Du, Ruofei;
Jiang, Hongmei;
An, Lingling

Publication type:

Article

Summary of the BioLINK SIG 2013 meeting at ISMB/ECCB 2013.

Published in:

2015

By:

Verspoor, Karin;
Shatkay, Hagit;
Hirschman, Lynette;
Blaschke, Christian;
Valencia, Alfonso

Publication type:

Proceeding

HTSeq—a Python framework to work with high-throughput sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 166, doi. 10.1093/bioinformatics/btu638

By:

Anders, Simon;
Pyl, Paul Theodor;
Huber, Wolfgang

Publication type:

Article

Enlight: web-based integration of GWAS results with biological annotations.

Published in:

Bioinformatics, 2015, v. 31, n. 2, p. 275, doi. 10.1093/bioinformatics/btu639

By:

Guo, Yunfei;
Conti, David V;
Wang, Kai

Publication type:

Article