Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 19

Results: 30

Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3044, doi. 10.1093/bioinformatics/btw331

By:

Kim, Sun;
Yeganova, Lana;
Wilbur, W. John

Publication type:

Article

Zerone: a ChIP-seq discretizer for multiple replicates with built-in quality control.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 2896, doi. 10.1093/bioinformatics/btw336

By:

Cuscó, Pol;
Filion, Guillaume J.

Publication type:

Article

Mango: a bias-correcting ChIA-PET analysis pipeline.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3092, doi. 10.1093/bioinformatics/btv336

By:

Phanstiel, Douglas H.;
Boyle, Alan P.;
Heidari, Nastaran;
Snyder, Michael P.

Publication type:

Article

IgSimulator: a versatile immunosequencing simulator.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3213, doi. 10.1093/bioinformatics/btv326

By:

Safonova, Yana;
Lapidus, Alla;
Lill, Jennie

Publication type:

Article

UniAlign: protein structure alignment meets evolution.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3139, doi. 10.1093/bioinformatics/btv354

By:

Chunyu Zhao;
Sacan, Ahmet

Publication type:

Article

EXIMS: an improved data analysis pipeline based on a new peak picking method for EXploring Imaging Mass Spectrometry data.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3198, doi. 10.1093/bioinformatics/btv356

By:

Wijetunge, Chalini D.;
Saeed, Isaam;
Boughton, Berin A.;
Spraggins, Jeffrey M.;
Caprioli, Richard M.;
Bacic, Antony;
Roessner, Ute;
Halgamuge, Saman K.

Publication type:

Article

Sparse multi-view matrix factorization: a multivariate approach to multiple tissue comparisons.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3163, doi. 10.1093/bioinformatics/btv344

By:

Zi Wang;
Wei Yuan;
Montana, Giovanni

Publication type:

Article

DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3222, doi. 10.1093/bioinformatics/btv333

By:

van Zundert, G. C. P.;
Bonvin, A. M. J. J.

Publication type:

Article

A parallel and sensitive software tool for methylation analysis on multicore platforms.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3130, doi. 10.1093/bioinformatics/btv357

By:

Tárraga, Joaquín;
Pérez, Mariano;
Ordunña, Juan M.;
Duato, José;
Medina, Ignacio;
Dopazo, Joaquín

Publication type:

Article

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3210, doi. 10.1093/bioinformatics/btv351

By:

Simão, Felipe A.;
Waterhouse, Robert M.;
Ioannidis, Panagiotis;
Kriventseva, Evgenia V.;
Zdobnov, Evgeny M.

Publication type:

Article

RPdb: a database of experimentally verified cellular reprogramming records.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3237, doi. 10.1093/bioinformatics/btv331

By:

Yi Shen;
Fan Gao;
Minghui Wang;
Ao Li

Publication type:

Article

ACE: accurate correction of errors using K-mer tries.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3216, doi. 10.1093/bioinformatics/btv332

By:

Sheikhizadeh, Siavash;
de Ridder, Dick

Publication type:

Article

The pervasiveness and plasticity of circadian oscillations: the coupled circadian-oscillators framework.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3181, doi. 10.1093/bioinformatics/btv353

By:

Patel, Vishal R.;
Ceglia, Nicholas;
Zeller, Michael;
Eckel-Mahan, Kristin;
Sassone-Corsi, Paolo;
Baldi, Pierre

Publication type:

Article

Automated profiling of individual cell-cell interactions from high-throughput time-lapse imaging microscopy in nanowell grids (TIMING).

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3189, doi. 10.1093/bioinformatics/btv355

By:

Merouane, Amine;
Rey-Villamizar, Nicolas;
Yanbin Lu;
Liadi, Ivan;
Romain, Gabrielle;
Lu, Jennifer;
Singh, Harjeet;
Cooper, Laurence J. N.;
Varadarajan, Navin;
Roysam, Badrinath

Publication type:

Article

lpNet: a linear programming approach to reconstruct signal transduction networks.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3231, doi. 10.1093/bioinformatics/btv327

By:

Matos, Marta R. A.;
Knapp, Bettina;
Kaderali, Lars

Publication type:

Article

QVZ: lossy compression of quality values.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3122, doi. 10.1093/bioinformatics/btv330

By:

Malysa, Greg;
Hernaez, Mikel;
Ochoa, Idoia;
Rao, Milind;
Ganesan, Karthik;
Weissman, Tsachy

Publication type:

Article

oposSOM: R-package for high-dimensional portraying of genome-wide expression landscapes on bioconductor.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3225, doi. 10.1093/bioinformatics/btv342

By:

Löffler-Wirth, Henry;
Kalcher, Martin;
Binder, Hans

Publication type:

Article

DISTMIX: direct imputation of summary statistics for unmeasured SNPs from mixed ethnicity cohorts.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3099, doi. 10.1093/bioinformatics/btv348

By:

Donghyung Lee;
Bigdeli, T. Bernard;
Williamson, Vernell S.;
Vladimirov, Vladimir I.;
Riley, Brien P.;
Fanous, Ayman H.;
Bacanu, Silviu-Alin

Publication type:

Article

FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3207, doi. 10.1093/bioinformatics/btv280

By:

Lam, Ka-Kit;
LaButti, Kurt;
Khalak, Asif;
Tse, David

Publication type:

Article

GeIST: a pipeline for mapping integrated DNA elements.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3219, doi. 10.1093/bioinformatics/btv350

By:

LaFave, Matthew C.;
Varshney, Gaurav K.;
Burgess, Shawn M.

Publication type:

Article

Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks.

Published in:: 2015
Publication type:: Correction Notice

antaRNA: ant colony-based RNA sequence design.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3114, doi. 10.1093/bioinformatics/btv319

By:

Kleinkauf, Robert;
Mann, Martin;
Backofen, Rolf

Publication type:

Article

FourCSeq: analysis of 4C sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3085, doi. 10.1093/bioinformatics/btv335

By:

Klein, Felix A.;
Pakozdi, Tibor;
Anders, Simon;
Ghavi-Helm, Yad;
Furlong, Eileen E. M.;
Huber, Wolfgang

Publication type:

Article

A web application for the unspecific detection of differentially expressed DNA regions in strand-specific expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3228, doi. 10.1093/bioinformatics/btv343

By:

Juanes, José M.;
Miguel, Ana;
Morales, Lucas J.;
Pérez-Ortín, José E.;
Arnau, Vicente

Publication type:

Article

Differential protein expression and peak selection in mass spectrometry data by binary discriminant analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3156, doi. 10.1093/bioinformatics/btv334

By:

Gibb, Sebastian;
Strimmer, Korbinian

Publication type:

Article

TiQuant: software for tissue analysis, quantification and surface reconstruction.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3234, doi. 10.1093/bioinformatics/btv346

By:

Friebel, Adrian;
Neitsch, Johannes;
Johann, Tim;
Hammad, Seddik;
Hengstler, Jan G.;
Drasdo, Dirk;
Hoehme, Stefan

Publication type:

Article

CCLasso: correlation inference for compositional data through Lasso.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3172, doi. 10.1093/bioinformatics/btv349

By:

Huaying Fang;
Chengcheng Huang;
Hongyu Zhao;
Minghua Deng

Publication type:

Article

xHeinz: an algorithm for mining cross-species network modules under a flexible conservation model.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3147, doi. 10.1093/bioinformatics/btv316

By:

El-Kebir, Mohammed;
Soueidan, Hayssam;
Hume, Thomas;
Beisser, Daniela;
Dittrich, Marcus;
Müller, Tobias;
Blin, Guillaume;
Heringa, Jaap;
Nikolski, Macha;
Wessels, Lodewyk F. A.;
Klau, Gunnar W.

Publication type:

Article

SoloDel: a probabilistic model for detecting low-frequent somatic deletions from unmatched sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3105, doi. 10.1093/bioinformatics/btv358

By:

Junho Kim;
Sanghyeon Kim;
Hojung Nam;
Sangwoo Kim;
Doheon Lee

Publication type:

Article

GC3-biased gene domains in mammalian genomes.

Published in:

Bioinformatics, 2015, v. 31, n. 19, p. 3081, doi. 10.1093/bioinformatics/btv329

By:

Wenlong Shen;
Dong Wang;
Bingyu Ye;
Minglei Shi;
Lei Ma;
Yan Zhang;
Zhihu Zhao

Publication type:

Article