Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 18

Results: 27

pwOmics: an R package for pathway-based integration of time-series omics data using public database knowledge.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3072, doi. 10.1093/bioinformatics/btv323

By:

Wachter, Astrid;
Beißbarth, Tim

Publication type:

Article

DSigDB: drug signatures database for gene set analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3069, doi. 10.1093/bioinformatics/btv313

By:

Minjae Yoo;
Jimin Shin;
Jihye Kim;
Ryall, Karen A.;
Kyubum Lee;
Sunwon Lee;
Minji Jeon;
Jaewoo Kang;
Aik Choon Tan

Publication type:

Article

WGE: a CRISPR database for genome engineering.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3078, doi. 10.1093/bioinformatics/btv308

By:

Hodgkins, Alex;
Farne, Anna;
Perera, Sajith;
Grego, Tiago;
Parry-Smith, David J.;
Skarnes, William C.;
Iyer, Vivek

Publication type:

Article

PsyGeNET: a knowledge platform on psychiatric disorders and their genes.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3075, doi. 10.1093/bioinformatics/btv301

By:

Gutiérrez-Sacristán, Alba;
Grosdidier, Solène;
Valverde, Olga;
Torrens, Marta;
Bravo, Àlex;
Piñero, Janet;
Sanz, Ferran;
Furlong, Laura I.

Publication type:

Article

COREGNET: reconstruction and integrated analysis of co-regulatory networks.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3066, doi. 10.1093/bioinformatics/btv305

By:

Nicolle, Rémy;
Radvanyi, François;
Elati, Mohamed

Publication type:

Article

Fast parametric time warping of peak lists.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3063, doi. 10.1093/bioinformatics/btv299

By:

Wehrens, Ron;
Bloemberg, Tom G.;
Eilers, Paul H. C.

Publication type:

Article

GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3060, doi. 10.1093/bioinformatics/btv297

By:

Gundersen, Gregory W.;
Jones, Matthew R.;
Rouillard, Andrew D.;
Yan Kou;
Monteiro, Caroline D.;
Feldmann, Axel S.;
Hu, Kevin S.;
Ma'ayan, Avi

Publication type:

Article

ABC: a tool to identify SNVs causing allele-specific transcription factor binding from ChIP-Seq experiments.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3057, doi. 10.1093/bioinformatics/btv321

By:

Bailey, Swneke D.;
Virtanen, Carl;
Haibe-Kains, Benjamin;
Lupien, Mathieu

Publication type:

Article

tmle.npvi: targeted, integrative search of associations between DNA copy number and gene expression, accounting for DNA methylation.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3054, doi. 10.1093/bioinformatics/btv320

By:

Chambaz, Antoine;
Neuvial, Pierre

Publication type:

Article

TRAL: tandem repeat annotation library.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3051, doi. 10.1093/bioinformatics/btv306

By:

Schaper, Elke;
Korsunsky, Alexander;
Pečerska, Jūlija;
Messina, Antonio;
Murri, Riccardo;
Stockinger, Heinz;
Zoller, Stefan;
Xenarios, Ioannis;
Anisimova, Maria

Publication type:

Article

PopGeV: a web-based large-scale population genome browser.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3048, doi. 10.1093/bioinformatics/btv324

By:

Xinyi Shi;
Jing Peng;
Xiaohan Yu;
Xiaohong Zhang;
Dongye Li;
Baohui Liu;
Fanjiang Kong;
Xiaohui Yuan

Publication type:

Article

agplus: a rapid and flexible tool for aggregation plots.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3046, doi. 10.1093/bioinformatics/btv322

By:

Kazumitsu Maehara;
Yasuyuki Ohkawa

Publication type:

Article

Seq2pathway: an R/Bioconductor package for pathway analysis of next-generation sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3043, doi. 10.1093/bioinformatics/btv289

By:

Bin Wang;
Cunningham, John M.;
Xinan (Holly) Yang

Publication type:

Article

GLASS: a comprehensive database for experimentally-validated GPCR-ligand associations associations.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3035, doi. 10.1093/bioinformatics/btv302

By:

Chan, Wallace K. B.;
Hongjiu Zhang;
Jianyi Yang;
Brender, Jeffrey R.;
Junguk Hur;
Özgür, Arzucan;
Yang Zhang

Publication type:

Article

SpeeDB: fast structural protein searches.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3027, doi. 10.1093/bioinformatics/btv274

By:

Robillard, David E.;
Mpangase, Phelelani T.;
Hazelhurst, Scott;
Dehne, Frank

Publication type:

Article

CAPRI: efficient inference of cancer progression models from cross-sectional data.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3016, doi. 10.1093/bioinformatics/btv296

By:

Ramazzotti, Daniele;
Caravagna, Giulio;
Loohuis, Loes Olde;
Graudenzi, Alex;
Korsunsky, Ilya;
Mauri, Giancarlo;
Antoniotti, Marco;
Mishra, Bud

Publication type:

Article

Trans-species learning of cellular signaling systems with bimodal deep belief networks.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 3008, doi. 10.1093/bioinformatics/btv315

By:

Lujia Chen;
Chunhui Cai;
Vicky Chen;
Xinghua Lu

Publication type:

Article

Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimization approach.

Published in:

2015

By:

Henriques, David;
Rocha, Miguel;
Saez-Rodriguez, Julio;
Banga, Julio R.

Publication type:

Case Study

Diffusion maps for high-dimensional single-cell analysis of differentiation data.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2989, doi. 10.1093/bioinformatics/btv325

By:

Haghverdi, Laleh;
Buettner, Florian;
Theis, Fabian J.

Publication type:

Article

Computer vision-based automated peak picking applied to protein NMR spectra.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2981, doi. 10.1093/bioinformatics/btv318

By:

Klukowski, Piotr;
Walczak, Michal J.;
Gonczarek, Adam;
Boudet, Julien;
Wider, Gerhard

Publication type:

Article

When less is more: 'slicing' sequencing data improves read decoding accuracy and de novo assembly quality.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2972, doi. 10.1093/bioinformatics/btv311

By:

Lonardi, Stefano;
Mirebrahim, Hamid;
Wanamaker, Steve;
Alpert, Matthew;
Ciardo, Gianfranco;
Duma, Denisa;
Close, Timothy J.

Publication type:

Article

IMSEQ--a fast and error aware approach to immunogenetic sequence analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2963, doi. 10.1093/bioinformatics/btv309

By:

Kuchenbecker, Leon;
Nienen, Mikalai;
Hecht, Jochen;
Neumann, Avidan U.;
Babel, Nina;
Reinert, Knut;
Robinson, Peter N.

Publication type:

Article

Likelihood-based complex trait association testing for arbitrary depth sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2955, doi. 10.1093/bioinformatics/btv307

By:

Song Yan;
Shuai Yuan;
Zheng Xu;
Baqun Zhang;
Bo Zhang;
Guolian Kang;
Byrnes, Andrea;
Yun Li

Publication type:

Article

Repeat- and error-aware comparison of deletions.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2947, doi. 10.1093/bioinformatics/btv304

By:

Wittler, Roland;
Marschall, Tobias;
Schönhuth, Alexander;
Mäkinen, Veli

Publication type:

Article

Epigenomic k-mer dictionaries: shedding light on how sequence composition influences in vivo nucleosome positioning.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2939, doi. 10.1093/bioinformatics/btv295

By:

Giancarlo, Raffaele;
Rombo, Simona E.;
Utro, Filippo

Publication type:

Article

Bayesian mixture analysis for metagenomic community profiling.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2930, doi. 10.1093/bioinformatics/btv317

By:

Morfopoulou, Sofia;
Plagnol, Vincent

Publication type:

Article

A novel essential domain perspective for exploring gene essentiality.

Published in:

Bioinformatics, 2015, v. 31, n. 18, p. 2921, doi. 10.1093/bioinformatics/btv312

By:

Yao Lu;
Yulan Lu;
Jingyuan Deng;
Hai Peng;
Hui Lu;
Long Jason Lu

Publication type:

Article