Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 17

Results: 32

GOplot: an R package for visually combining expression data with functional analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2912, doi. 10.1093/bioinformatics/btv300

By:

Walter, Wencke;
Sanchez-Cabo, Fatima;
Ricote, Mercedes

Publication type:

Article

Interactive analysis of large cancer copy number studies with Copy Number Explorer.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2874, doi. 10.1093/bioinformatics/btv298

By:

Newman, Scott

Publication type:

Article

BinDNase: a discriminatory approach for transcription factor binding prediction using DNase I hypersensitivity data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2852, doi. 10.1093/bioinformatics/btv294

By:

Khärä, Juhani;
Lahdesmaki, Harri

Publication type:

Article

Using combined evidence from replicates to evaluate ChIP-seq peaks.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2761, doi. 10.1093/bioinformatics/btv293

By:

Jalili, Vahid;
Matteucci, Matteo;
Masseroli, Marco;
Morelli, Marco J.

Publication type:

Article

MemGen: a general web server for the setup of lipid membrane simulation systems.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2897, doi. 10.1093/bioinformatics/btv292

By:

Knight, Christopher J.;
Hub, Jochen S.

Publication type:

Article

INPS: predicting the impact of non-synonymous variations on protein stability from sequence.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2816, doi. 10.1093/bioinformatics/btv291

By:

Fariselli, Piero;
Martelli, Pier Luigi;
Savojardo, Castrense;
Casadio, Rita

Publication type:

Article

BFC: correcting Illumina sequencing errors.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2885, doi. 10.1093/bioinformatics/btv290

By:

Heng Li

Publication type:

Article

INSPEcT: a computational tool to infer mRNA synthesis, processing and degradation dynamics from RNA- and 4sU-seq time course experiments.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2829, doi. 10.1093/bioinformatics/btv288

By:

de Pretis, Stefano;
Kress, Theresia;
Morelli, Marco J.;
Melloni, Giorgio E. M.;
Riva, Laura;
Amati, Bruno;
Pelizzola, Mattia

Publication type:

Article

Tax4Fun: predicting functional profiles from metagenomic 16S rRNA data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2882, doi. 10.1093/bioinformatics/btv287

By:

Aßhauer, Kathrin P.;
Wemheuer, Bernd;
Daniel, Rolf;
Meinicke, Peter

Publication type:

Article

Gener: a minimal programming module for chemical controllers based on DNA strand displacement.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2906, doi. 10.1093/bioinformatics/btv286

By:

Kahramanoğulları, Ozan;
Cardelli, Luca

Publication type:

Article

The SwissLipids knowledgebase for lipid biology.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2860, doi. 10.1093/bioinformatics/btv285

By:

Aimo, Lucila;
Liechti, Robin;
Hyka-Nouspikel, Nevila;
Niknejad, Anne;
Gleizes, Anne;
Götz, Lou;
Kuznetsov, Dmitry;
David, Fabrice P. A.;
van der Goot, F. Gisou;
Riezman, Howard;
Bougueleret, Lydie;
Xenarios, Ioannis;
Bridge, Alan

Publication type:

Article

Identification of C2H2-ZF binding preferences from ChIP-seq data using RCADE.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2879, doi. 10.1093/bioinformatics/btv284

By:

Najafabadi, Hamed S.;
Albu, Mihai;
Hughes, Timothy R.

Publication type:

Article

IonGAP: integrative bacterial genome analysis for Ion Torrent sequence data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2870, doi. 10.1093/bioinformatics/btv283

By:

Baez-Ortega, Adrian;
Lorenzo-Diaz, Fabian;
Hernandez, Mariano;
Gonzalez-Vila, Carlos Ignacio;
Roda-Garcia, Jose Luis;
Colebrook, Marcos;
Flores, Carlos

Publication type:

Article

Automated band annotation for RNA structure probing experiments with numerous capillary electrophoresis profiles.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2808, doi. 10.1093/bioinformatics/btv282

By:

Seungmyung Lee;
Hanjoo Kim;
Siqi Tian;
Taehoon Lee;
Sungroh Yoon;
Rhiju Das

Publication type:

Article

HTT-DB: Horizontally transferred transposable elements database.

Published in:

2015

By:

Reis Dotto, Bruno;
Leis Carvalho, Evelise;
Freitas Silva, Alexandre;
Duarte Silva, Luiz Fernando;
Pinto, Paulo Marcos;
Freitas Ortiz, Mauro;
Wallau, Gabriel Luz

Publication type:

Case Study

'Flatten plus': a recent implementation in WSxM for biological research.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2918, doi. 10.1093/bioinformatics/btv278

By:

Gimeno, Alejandro;
Ares, Pablo;
Horcas, Ignacio;
Gil, Adriana;
Gómez-Rodrıguez, José M.;
Colchero, Jaime;
Gómez-Herrero, Julio

Publication type:

Article

pez: phylogenetics for the environmental sciences.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2888, doi. 10.1093/bioinformatics/btv277

By:

Pearse, William D.;
Cadotte, Marc W.;
Cavender-Bares, Jeannine;
Ives, Anthony R.;
Tucker, Caroline M.;
Walker, Steve C.;
Helmus, Matthew R.

Publication type:

Article

Phylesystem: a git-based data store for community-curated phylogenetic estimates.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2794, doi. 10.1093/bioinformatics/btv276

By:

McTavish, Emily Jane;
Hinchliff, Cody E.;
Allman, James F.;
Brown, Joseph W.;
Cranston, Karen A.;
Holder, Mark T.;
Rees, Jonathan A.;
Smith, Stephen A.

Publication type:

Article

RVD2: an ultra-sensitive variant detection model for low-depth heterogeneous next-generation sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2785, doi. 10.1093/bioinformatics/btv275

By:

Yuting He;
Fan Zhang;
Flaherty, Patrick

Publication type:

Article

Polyester: simulating RNA-seq datasets with differential transcript expression.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2778, doi. 10.1093/bioinformatics/btv272

By:

Frazee, Alyssa C.;
Jaffe, Andrew E.;
Langmead, Ben;
Leek, Jeffrey T.

Publication type:

Article

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2877, doi. 10.1093/bioinformatics/btv271

By:

Gardner, Shea N.;
Slezak, Tom;
Hall, Barry G.

Publication type:

Article

DockStar: a novel ILP-based integrative method for structural modeling of multimolecular protein complexes.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2801, doi. 10.1093/bioinformatics/btv270

By:

Amir, Naama;
Cohen, Dan;
Wolfson, Haim J.

Publication type:

Article

phylogeo: an R package for geographic analysis and visualization of microbiome data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2909, doi. 10.1093/bioinformatics/btv269

By:

Charlop-Powers, Zachary;
Brady, Sean F.

Publication type:

Article

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2903, doi. 10.1093/bioinformatics/btv250

By:

Perez-Riverol, Yasset;
Uszkoreit, Julian;
Sanchez, Aniel;
Ternent, Tobias;
del Toro, Noemi;
Hermjakob, Henning;
Vizcaıno, Juan Antonio;
Rui Wang

Publication type:

Article

CiVi: circular genome visualization with unique features to analyze sequence elements.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2867, doi. 10.1093/bioinformatics/btv249

By:

Overmars, Lex;
van Hijum, Sacha A. F. T.;
Siezen, Roland J.;
Francke, Christof

Publication type:

Article

Data-dependent bucketing improves reference-free compression of sequencing reads.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2770, doi. 10.1093/bioinformatics/btv248

By:

Patro, Rob;
Kingsford, Carl

Publication type:

Article

PDBest: a user-friendly platform for manipulating and enhancing protein structures.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2894, doi. 10.1093/bioinformatics/btv223

By:

Gonçalves, Wellisson R. S.;
Gonçalves-Almeida, Valdete M.;
Arruda, Aleksander L.;
Meira Jr., Wagner;
da Silveira, Carlos H.;
Pires, Douglas E. V.;
de Melo-Minardi, Raquel C.

Publication type:

Article

iFoldRNA v2: folding RNA with constraints.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2891, doi. 10.1093/bioinformatics/btv221

By:

Krokhotin, Andrey;
Houlihan, Kevin;
Dokholyan, Nikolay V.

Publication type:

Article

Inferring data-specific micro-RNA function through the joint ranking of micro-RNA and pathways from matched micro-RNA and gene expression data.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2822, doi. 10.1093/bioinformatics/btv220

By:

Patrick, Ellis;
Buckley, Michael;
Müller, Samuel;
Lin, David M.;
Yang, Jean Y. H.

Publication type:

Article

Genome-scale strain designs based on regulatory minimal cut sets.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2844, doi. 10.1093/bioinformatics/btv217

By:

Mahadevan, Radhakrishnan;
von Kamp, Axel;
Klamt, Steffen

Publication type:

Article

Addressing false discoveries in network inference.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2836, doi. 10.1093/bioinformatics/btv215

By:

Petri, Tobias;
Altmann, Stefan;
Geistlinger, Ludwig;
Zimmer, Ralf;
Kuffner, Robert

Publication type:

Article

chipPCR: an R package to pre-process raw data of amplification curves.

Published in:

Bioinformatics, 2015, v. 31, n. 17, p. 2900, doi. 10.1093/bioinformatics/btv205

By:

Rödiger, Stefan;
Burdukiewicz, Michał;
Schierack, Peter

Publication type:

Article