Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 13

Results: 31

RAPTR-SV: a hybrid method for the detection of structural variants.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2084, doi. 10.1093/bioinformatics/btv086

By:

Bickhart, Derek M.;
Hutchison, Jana L.;
Lingyang Xu;
Schnabel, Robert D.;
Taylor, Jeremy F.;
Reecy, James M.;
Schroeder, Steven;
Van Tassell, Curt P.;
Sonstegard, Tad S.;
Liu, George E.

Publication type:

Article

Systems biology: L-GRAAL: Lagrangian graphlet-based network aligner.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2182, doi. 10.1093/bioinformatics/btv130

By:

Malod-Dognin, Noël;
Pržulj, Nataša

Publication type:

Article

Phylogenetics: Mammalian genome evolution is governed by multiple pacemakers.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2061, doi. 10.1093/bioinformatics/btv121

By:

Duchêne, Sebastián;
Ho, Simon Y. W.

Publication type:

Article

Structural bioinformatics: GlycoProfileAssigner: automated structural assignment with error estimation for glycan LC data.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2220, doi. 10.1093/bioinformatics/btv129

By:

Duffy, Fergal J.;
Rudd, Pauline M.

Publication type:

Article

Systems biology: RepExplore: addressing technical replicate variance in proteomics and metabolomics data analysis.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2235, doi. 10.1093/bioinformatics/btv127

By:

Glaab, Enrico;
Schneider, Reinhard

Publication type:

Article

Genome analysis: An event-driven approach for studying gene block evolution in bacteria.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2075, doi. 10.1093/bioinformatics/btv128

By:

Ream, David C.;
Bankapur, Asma R.;
Friedberg, Iddo

Publication type:

Article

Structural bioinformatics: Fast, accurate, and reliable molecular docking with QuickVina 2.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2214, doi. 10.1093/bioinformatics/btv082

By:

Amr Alhossary;
Stephanus Daniel Handoko;
Yuguang Mu;
Chee-Keong Kwoh

Publication type:

Article

Gene expression: Guidance for RNA-seq co-expression network construction and analysis: safety in numbers.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2123, doi. 10.1093/bioinformatics/btv118

By:

Ballouz, S.;
Verleyen, W.;
Gillis, J.

Publication type:

Article

GeNOSA: inferring and experimentally supporting quantitative gene regulatory networks in prokaryotes.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2151, doi. 10.1093/bioinformatics/btv075

By:

Yi-Hsiung Chen;
Chi-Dung Yang;
Ching-Ping Tseng;
Hsien-Da Huang;
Shinn-Ying Ho

Publication type:

Article

Detection of significant protein coevolution.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2166, doi. 10.1093/bioinformatics/btv102

By:

Ochoa, David;
Juan, David;
Valencia, Alfonso;
Pazos, Florencio

Publication type:

Article

GlycanAnalysis Plug-in: a database search tool for N-glycan structures using mass spectrometry.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2217, doi. 10.1093/bioinformatics/btv110

By:

Kentaro Morimoto;
Takashi Nishikaze;
Yoshizawa, Akiyasu C.;
Shigeki Kajihara;
Ken Aoshima;
Yoshiya Oda;
Koichi Tanaka

Publication type:

Article

specL—an R/Bioconductor package to prepare peptide spectrum matches for use in targeted proteomics.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2228, doi. 10.1093/bioinformatics/btv105

By:

Panse, Christian;
Trachsel, Christian;
Grossmann, Jonas;
Schlapbach, Ralph

Publication type:

Article

EpiToolKit—a web-based workbench for vaccine design.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2211, doi. 10.1093/bioinformatics/btv116

By:

Schubert, Benjamin;
Brachvogel, Hans-Philipp;
Jürges, Christopher;
Kohlbacher, Oliver

Publication type:

Article

LCR-eXXXplorer: a web platform to search, visualize and share data for low complexity regions in protein sequences.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2208, doi. 10.1093/bioinformatics/btv115

By:

Kirmitzoglou, Ioannis;
Promponas, Vasilis J.

Publication type:

Article

Pattern recognition methods to relate time profiles of gene expression with phenotypic data: a comparative study.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2115, doi. 10.1093/bioinformatics/btv108

By:

Hendrickx, Diana M.;
Jennen, Danyel G. J.;
Briedé, Jacob J.;
Cavill, Rachel;
de Kok, Theo M.;
Kleinjans, Jos C. S.

Publication type:

Article

Deep sequencing analysis of viral infection and evolution allows rapid and detailed characterization of viral mutant spectrum.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2141, doi. 10.1093/bioinformatics/btv101

By:

Isakov, Ofer;
Bordería, Antonio V.;
Golan, David;
Hamenahem, Amir;
Celniker, Gershon;
Yoffe, Liron;
Blanc, Hervé;
Vignuzzi, Marco;
Shomron, Noam

Publication type:

Article

Annocript: a flexible pipeline for the annotation of transcriptomes able to identify putative long noncoding RNAs.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2199, doi. 10.1093/bioinformatics/btv106

By:

Musacchia, Francesco;
Basu, Swaraj;
Petrosino, Giuseppe;
Salvemini, Marco;
Sanges, Remo

Publication type:

Article

Oasis: online analysis of small RNA deep sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2205, doi. 10.1093/bioinformatics/btv113

By:

Capece, Vincenzo;
Garcia Vizcaino, Julio C.;
Vidal, Ramon;
Rahman, Raza-Ur;
Shomroni, Orr;
Suberviola, Irantzu;
Fischer, Andre;
Bonn, Stefan

Publication type:

Article

tEFMA: computing thermodynamically feasible elementary flux modes in metabolic networks.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2232, doi. 10.1093/bioinformatics/btv111

By:

Gerstl, Matthias P.;
Jungreuthmayer, Christian;
Zanghellini, Jürgen

Publication type:

Article

CycleFreeFlux: efficient removal of thermodynamically infeasible loops from flux distributions.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2159, doi. 10.1093/bioinformatics/btv096

By:

Desouki, Abdelmoneim Amer;
Jarre, Florian;
Gelius-Dietrich, Gabriel;
Lercher, Martin J.

Publication type:

Article

Folding RaCe: a robust method for predicting changes in protein folding rates upon point mutations.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2091, doi. 10.1093/bioinformatics/btv091

By:

Chaudhary, Priyashree;
Naganathan, Athi N.;
Gromiha, M. Michael

Publication type:

Article

AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2098, doi. 10.1093/bioinformatics/btv092

By:

Dong Xu;
Jaroszewski, Lukasz;
Zhanwen Li;
Godzik, Adam

Publication type:

Article

Message from the ISCB: 2015 ISCB Accomplishment by a Senior Scientist Award: Cyrus Chothia.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2238, doi. 10.1093/bioinformatics/btv218

By:

Fogg, Christiana N.;
Kovats, Diane E.

Publication type:

Article

Normalization and noise reduction for single cell RNA-seq experiments.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2225, doi. 10.1093/bioinformatics/btv122

By:

Bo Ding;
Lina Zheng;
Yun Zhu;
Nan Li;
Haiyang Jia;
Ai, Rizi;
Wildberg, Andre;
Wei Wang

Publication type:

Article

rSeqNP: a non-parametric approach for detecting differential expression and splicing from RNA-Seq data.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2222, doi. 10.1093/bioinformatics/btv119

By:

Yang Shi;
Chinnaiyan, Arul M.;
Hui Jiang

Publication type:

Article

Unified representation of genetic variants.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2202, doi. 10.1093/bioinformatics/btv112

By:

Tan, Adrian;
Abecasis, Gonçalo R.;
Hyun Min Kang

Publication type:

Article

Population-scale three-dimensional reconstruction and quantitative profiling of microglia arbors.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2190, doi. 10.1093/bioinformatics/btv109

By:

Megjhani, Murad;
Rey-Villamizar, Nicolas;
Merouane, Amine;
Yanbin Lu;
Mukherjee, Amit;
Trett, Kristen;
Chong, Peter;
Harris, Carolyn;
Shain, William;
Roysam, Badrinath

Publication type:

Article

Automated benchmarking of peptide-MHC class I binding predictions.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2174, doi. 10.1093/bioinformatics/btv123

By:

Trolle, Thomas;
Metushi, Imir G.;
Greenbaum, Jason A.;
Kim, Yohan;
Sidney, John;
Lund, Ole;
Sette, Alessandro;
Peters, Bjoern;
Nielsen, Morten

Publication type:

Article

SimSeq: a nonparametric approach to simulation of RNA-sequence datasets.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2131, doi. 10.1093/bioinformatics/btv124

By:

Benidt, Sam;
Nettleton, Dan

Publication type:

Article

A new method to improve network topological similarity search: applied to fold recognition.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2106, doi. 10.1093/bioinformatics/btv125

By:

Lhota, John;
Hauptman, Ruth;
Hart, Thomas;
Ng, Clara;
Lei Xie

Publication type:

Article

hiHMM: Bayesian non-parametric joint inference of chromatin state maps.

Published in:

Bioinformatics, 2015, v. 31, n. 13, p. 2066, doi. 10.1093/bioinformatics/btv117

By:

Kyung-Ah Sohn;
Ho, Joshua W. K.;
Djordjevic, Djordje;
Hyun-hwan Jeong;
Park, Peter J.;
Ju Han Kim

Publication type:

Article