Works matching IS 13674803 AND DT 2015 AND VI 31 AND IP 1

Results: 29

Snowball: resampling combined with distance-based regression to discover transcriptional consequences of a driver mutation.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 84, doi. 10.1093/bioinformatics/btu603

By:

Xu, Yaomin;
Guo, Xingyi;
Sun, Jiayang;
Zhao, Zhongming

Publication type:

Article

Over-representation of correlation analysis (ORCA): a method for identifying associations between variable sets.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 102, doi. 10.1093/bioinformatics/btu589

By:

Pomyen, Yotsawat;
Segura, Marcelo;
Ebbels, Timothy M. D.;
Keun, Hector C.

Publication type:

Article

Improved rat genome gene prediction by integration of ESTs with RNA-Seq information.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 25, doi. 10.1093/bioinformatics/btu608

By:

Li, Liping;
Chen, Enguo;
Yang, Chun;
Zhu, Jun;
Jayaraman, Pushkala;
De Pons, Jeffrey;
Kaczorowski, Catherine C.;
Jacob, Howard J.;
Greene, Andrew S.;
Hodges, Matthew R.;
Cowley, Allen W.;
Liang, Mingyu;
Xu, Haiming;
Liu, Pengyuan;
Lu, Yan

Publication type:

Article

Gene regulatory networks by transcription factors and microRNAs in breast cancer.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 76, doi. 10.1093/bioinformatics/btu597

By:

Qin, Sheng;
Ma, Fei;
Chen, Liming

Publication type:

Article

BigDataScript: a scripting language for data pipelines.

Published in:

2015

By:

Cingolani, Pablo;
Sladek, Rob;
Blanchette, Mathieu

Publication type:

Product Review

Using population data for assessing next-generation sequencing performance.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 56, doi. 10.1093/bioinformatics/btu606

By:

Houniet, Darren T.;
Rahman, Thahira J.;
Al Turki, Saeed;
Hurles, Matthew E.;
Xu, Yaobo;
Goodship, Judith;
Keavney, Bernard;
Santibanez Koref, Mauro

Publication type:

Article

Estimation of GFP-tagged RNA numbers from temporal fluorescence intensity data.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 69, doi. 10.1093/bioinformatics/btu592

By:

Häkkinen, Antti;
Ribeiro, Andre S.

Publication type:

Article

VirVarSeq: a low-frequency virus variant detection pipeline for Illumina sequencing using adaptive base-calling accuracy filtering.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 94, doi. 10.1093/bioinformatics/btu587

By:

Verbist, Bie M.P.;
Thys, Kim;
Reumers, Joke;
Wetzels, Yves;
Van der Borght, Koen;
Talloen, Willem;
Aerssens, Jeroen;
Clement, Lieven;
Thas, Olivier

Publication type:

Article

Insights into structural variations and genome rearrangements in prokaryotic genomes.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 1, doi. 10.1093/bioinformatics/btu600

By:

Periwal, Vinita;
Scaria, Vinod

Publication type:

Article

RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 126, doi. 10.1093/bioinformatics/btu596

By:

Quinn, Gregory B.;
Bi, Chunxiao;
Christie, Cole H.;
Pang, Kyle;
Prlić, Andreas;
Nakane, Takanori;
Zardecki, Christine;
Voigt, Maria;
Berman, Helen M.;
Bourne, Philip E.;
Rose, Peter W.

Publication type:

Article

mod_bio: Apache modules for Next-Generation sequencing data.

Published in:

2015

By:

Lindenbaum, Pierre;
Redon, Richard

Publication type:

Product Review

Prediction of Indel flanking regions in protein sequences using a variable-order Markov model.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 40, doi. 10.1093/bioinformatics/btu556

By:

Al-Shatnawi, Mufleh;
Ahmad, M. Omair;
Swamy, M.N.S.

Publication type:

Article

SignalSpider: probabilistic pattern discovery on multiple normalized ChIP-Seq signal profiles.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 17, doi. 10.1093/bioinformatics/btu604

By:

Wong, Ka-Chun;
Li, Yue;
Peng, Chengbin;
Zhang, Zhaolei

Publication type:

Article

The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 140, doi. 10.1093/bioinformatics/btu601

By:

Corpas, Manuel;
Jimenez, Rafael C.;
Bongcam-Rudloff, Erik;
Budd, Aidan;
Brazas, Michelle D.;
Fernandes, Pedro L.;
Gaeta, Bruno;
van Gelder, Celia;
Korpelainen, Eija;
Lewitter, Fran;
McGrath, Annette;
MacLean, Daniel;
Palagi, Patricia M.;
Rother, Kristian;
Taylor, Jan;
Via, Allegra;
Watson, Mick;
Schneider, Maria Victoria;
Attwood, Teresa K.

Publication type:

Article

Genomon ITDetector: a tool for somatic internal tandem duplication detection from cancer genome sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 116, doi. 10.1093/bioinformatics/btu593

By:

Chiba, Kenichi;
Shiraishi, Yuichi;
Nagata, Yasunobu;
Yoshida, Kenichi;
Imoto, Seiya;
Ogawa, Seishi;
Miyano, Satoru

Publication type:

Article

Individual-level analysis of differential expression of genes and pathways for personalized medicine.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 62, doi. 10.1093/bioinformatics/btu522

By:

Wang, Hongwei;
Sun, Qiang;
Zhao, Wenyuan;
Qi, Lishuang;
Gu, Yunyan;
Li, Pengfei;
Zhang, Mengmeng;
Li, Yang;
Liu, Shu-Lin;
Guo, Zheng

Publication type:

Article

Achievements and challenges in structural bioinformatics and computational biophysics.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 146, doi. 10.1093/bioinformatics/btu769

By:

Samish, Ilan;
Bourne, Philip E.;
Najmanovich, Rafael J.

Publication type:

Article

JAMM: a peak finder for joint analysis of NGS replicates.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 48, doi. 10.1093/bioinformatics/btu568

By:

Ibrahim, Mahmoud M.;
Lacadie, Scott A.;
Ohler, Uwe

Publication type:

Article

The Ensembl REST API: Ensembl Data for Any Language.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 143, doi. 10.1093/bioinformatics/btu613

By:

Yates, Andrew;
Beal, Kathryn;
Keenan, Stephen;
McLaren, William;
Pignatelli, Miguel;
Ritchie, Graham R. S.;
Ruffier, Magali;
Taylor, Kieron;
Vullo, Alessandro;
Flicek, Paul

Publication type:

Article

BalestraWeb: efficient online evaluation of drug–target interactions.

Published in:

2015

By:

Cobanoglu, Murat Can;
Oltvai, Zoltán N.;
Taylor, D. Lansing;
Bahar, Ivet

Publication type:

Web Site Review

PseKNC-General: a cross-platform package for generating various modes of pseudo nucleotide compositions.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 119, doi. 10.1093/bioinformatics/btu602

By:

Chen, Wei;
Zhang, Xitong;
Brooker, Jordan;
Lin, Hao;
Zhang, Liqing;
Chou, Kuo-Chen

Publication type:

Article

CCharPPI web server: computational characterization of protein–protein interactions from structure.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 123, doi. 10.1093/bioinformatics/btu594

By:

Moal, Iain H.;
Jiménez-García, Brian;
Fernández-Recio, Juan

Publication type:

Article

GenPlay Multi-Genome, a tool to compare and analyze multiple human genomes in a graphical interface.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 109, doi. 10.1093/bioinformatics/btu588

By:

Lajugie, Julien;
Fourel, Nicolas;
Bouhassira, Eric E.

Publication type:

Article

ballaxy: web services for structural bioinformatics.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 121, doi. 10.1093/bioinformatics/btu574

By:

Hildebrandt, Anna Katharina;
Stöckel, Daniel;
Fischer, Nina M.;
de la Garza, Luis;
Krüger, Jens;
Nickels, Stefan;
Röttig, Marc;
Schärfe, Charlotta;
Schumann, Marcel;
Thiel, Philipp;
Lenhof, Hans-Peter;
Kohlbacher, Oliver;
Hildebrandt, Andreas

Publication type:

Article

UNDO: a Bioconductor R package for unsupervised deconvolution of mixed gene expressions in tumor samples.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 137, doi. 10.1093/bioinformatics/btu607

By:

Wang, Niya;
Gong, Ting;
Clarke, Robert;
Chen, Lulu;
Shih, Ie-Ming;
Zhang, Zhen;
Levine, Douglas A.;
Xuan, Jianhua;
Wang, Yue

Publication type:

Article

cddApp: a Cytoscape app for accessing the NCBI conserved domain database.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 134, doi. 10.1093/bioinformatics/btu605

By:

Morris, John H.;
Wu, Allan;
Yamashita, Roxanne A.;
Marchler-Bauer, Aron;
Ferrin, Thomas E.

Publication type:

Article

poRe: an R package for the visualization and analysis of nanopore sequencing data.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 114, doi. 10.1093/bioinformatics/btu590

By:

Watson, Mick;
Thomson, Marian;
Risse, Judith;
Talbot, Richard;
Santoyo-Lopez, Javier;
Gharbi, Karim;
Blaxter, Mark

Publication type:

Article

Making novel proteins from pseudogenes.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 33, doi. 10.1093/bioinformatics/btu615

By:

Shidhi, P. R.;
Suravajhala, Prashanth;
Nayeema, Aysha;
Nair, Achuthsankar S.;
Singh, Shailja;
Dhar, Pawan K.

Publication type:

Article

RAMONA: a Web application for gene set analysis on multilevel omics data.

Published in:

Bioinformatics, 2015, v. 31, n. 1, p. 128, doi. 10.1093/bioinformatics/btu610

By:

Sass, Steffen;
Buettner, Florian;
Mueller, Nikola S.;
Theis, Fabian J.

Publication type:

Article