Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 9

Results: 36

Evolutionary footprint of coevolving positions in genes.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1241, doi. 10.1093/bioinformatics/btu012

By:

Dib, Linda;
Silvestro, Daniele;
Salamin, Nicolas

Publication type:

Article

CGARS: cancer genome analysis by rank sums.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1295, doi. 10.1093/bioinformatics/btu011

By:

Lu, Xin;
Thomas, Roman K.;
Peifer, Martin

Publication type:

Article

Oqtans: the RNA-seq workbench in the cloud for complete and reproducible quantitative transcriptome analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1300, doi. 10.1093/bioinformatics/btt731

By:

Sreedharan, Vipin T.;
Schultheiss, Sebastian J.;
Jean, Géraldine;
Kahles, André;
Bohnert, Regina;
Drewe, Philipp;
Mudrakarta, Pramod;
Görnitz, Nico;
Zeller, Georg;
Rätsch, Gunnar

Publication type:

Article

MEGA-MD: molecular evolutionary genetics analysis software with mutational diagnosis of amino acid variation.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1305, doi. 10.1093/bioinformatics/btu018

By:

Stecher, Glen;
Liu, Li;
Sanderford, Maxwell;
Peterson, Daniel;
Tamura, Koichiro;
Kumar, Sudhir

Publication type:

Article

INCA: a computational platform for isotopically non-stationary metabolic flux analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1333, doi. 10.1093/bioinformatics/btu015

By:

Young, Jamey D.

Publication type:

Article

PhyloJIVE: Integrating biodiversity data with the Tree of Life.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1308, doi. 10.1093/bioinformatics/btu024

By:

Jolley-Rogers, Garry;
Varghese, Temi;
Harvey, Paul;
dos Remedios, Nick;
Miller, Joseph T.

Publication type:

Article

Ontodog: a web-based ontology community view generation tool.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1340, doi. 10.1093/bioinformatics/btu008

By:

Zheng, Jie;
Xiang, Zuoshuang;
Stoeckert, Christian J.;
He, Yongqun

Publication type:

Article

Enhanced flowType/RchyOptimyx: a Bioconductor pipeline for discovery in high-dimensional cytometry data.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1329, doi. 10.1093/bioinformatics/btt770

By:

O’Neill, Kieran;
Jalali, Adrin;
Aghaeepour, Nima;
Hoos, Holger;
Brinkman, Ryan R.

Publication type:

Article

Identification of short terminal motifs enriched by antibodies using peptide mass fingerprinting.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1205, doi. 10.1093/bioinformatics/btu009

By:

Planatscher, Hannes;
Weiß, Frederik;
Eisen, David;
van den Berg, B.H.J.;
Zell, Andreas;
Joos, Thomas;
Poetz, Oliver

Publication type:

Article

netClass: an R-package for network based, integrative biomarker signature discovery.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1325, doi. 10.1093/bioinformatics/btu025

By:

Cun, Yupeng;
Fröhlich, Holger

Publication type:

Article

Prediction of nuclear export signals using weighted regular expressions (Wregex).

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1220, doi. 10.1093/bioinformatics/btu016

By:

Prieto, Gorka;
Fullaondo, Asier;
Rodriguez, Jose A.

Publication type:

Article

Mass-spectrometry-based spatial proteomics data analysis using pRoloc and pRolocdata.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1322, doi. 10.1093/bioinformatics/btu013

By:

Gatto, Laurent;
Breckels, Lisa M.;
Wieczorek, Samuel;
Burger, Thomas;
Lilley, Kathryn S.

Publication type:

Article

CGAT: computational genomics analysis toolkit.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1290, doi. 10.1093/bioinformatics/btt756

By:

Sims, David;
Ilott, Nicholas E.;
Sansom, Stephen N.;
Sudbery, Ian M.;
Johnson, Jethro S.;
Fawcett, Katherine A.;
Berlanga-Taylor, Antonio J.;
Luna-Valero, Sebastian;
Ponting, Chris P.;
Heger, Andreas

Publication type:

Article

Subclonal variant calling with multiple samples and prior knowledge.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1198, doi. 10.1093/bioinformatics/btt750

By:

Gerstung, Moritz;
Papaemmanuil, Elli;
Campbell, Peter J.

Publication type:

Article

BlindCall: ultra-fast base-calling of high-throughput sequencing data by blind deconvolution.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1214

By:

Ye, Chengxi;
Hsiao, Chiaowen;
Corrada Bravo, Héctor

Publication type:

Article

PanGP: A tool for quickly analyzing bacterial pan-genome profile.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1297, doi. 10.1093/bioinformatics/btu017

By:

Zhao, Yongbing;
Jia, Xinmiao;
Yang, Junhui;
Ling, Yunchao;
Zhang, Zhang;
Yu, Jun;
Wu, Jiayan;
Xiao, Jingfa

Publication type:

Article

Exploring genome characteristics and sequence quality without a reference.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1228, doi. 10.1093/bioinformatics/btu023

By:

Simpson, Jared T.

Publication type:

Article

Automatic identification of mixed bacterial species fingerprints in a MALDI-TOF mass-spectrum.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1280, doi. 10.1093/bioinformatics/btu022

By:

Mahé, Pierre;
Arsac, Maud;
Chatellier, Sonia;
Monnin, Valérie;
Perrot, Nadine;
Mailler, Sandrine;
Girard, Victoria;
Ramjeet, Mahendrasingh;
Surre, Jérémy;
Lacroix, Bruno;
van Belkum, Alex;
Veyrieras, Jean-Baptiste

Publication type:

Article

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1259, doi. 10.1093/bioinformatics/btu020

By:

Malod-Dognin, Noël;
Pržulj, Nataša

Publication type:

Article

PeaKDEck: a kernel density estimator-based peak calling program for DNaseI-seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1302, doi. 10.1093/bioinformatics/btt774

By:

McCarthy, Michael T.;
O’Callaghan, Christopher A.

Publication type:

Article

myFX: a turn-key software for laboratory desktops to analyze spatial patterns of gene expression in Drosophila embryos.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1319, doi. 10.1093/bioinformatics/btu007

By:

Montiel, Ivan;
Konikoff, Charlotte;
Braun, Bremen;
Packard, Mary;
Gramates, Sian L.;
Sun, Qian;
Ye, Jieping;
Kumar, Sudhir

Publication type:

Article

Morpheus: a user-friendly modeling environment for multiscale and multicellular systems biology.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1331

By:

Starruß, Jörn;
de Back, Walter;
Brusch, Lutz;
Deutsch, Andreas

Publication type:

Article

Characterization of the SOS meta-regulon in the human gut microbiome.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1193, doi. 10.1093/bioinformatics/btt753

By:

Cornish, Joseph P.;
Sanchez-Alberola, Neus;
O’Neill, Patrick K.;
O'Keefe, Ronald;
Gheba, Jameel;
Erill, Ivan

Publication type:

Article

InterProScan 5: genome-scale protein function classification.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1236, doi. 10.1093/bioinformatics/btu031

By:

Jones, Philip;
Binns, David;
Chang, Hsin-Yu;
Fraser, Matthew;
Li, Weizhong;
McAnulla, Craig;
McWilliam, Hamish;
Maslen, John;
Mitchell, Alex;
Nuka, Gift;
Pesseat, Sebastien;
Quinn, Antony F.;
Sangrador-Vegas, Amaia;
Scheremetjew, Maxim;
Yong, Siew-Yit;
Lopez, Rodrigo;
Hunter, Sarah

Publication type:

Article

ProbMetab: an R package for Bayesian probabilistic annotation of LC–MS-based metabolomics.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1336, doi. 10.1093/bioinformatics/btu019

By:

Silva, Ricardo R.;
Jourdan, Fabien;
Salvanha, Diego M.;
Letisse, Fabien;
Jamin, Emilien L.;
Guidetti-Gonzalez, Simone;
Labate, Carlos A.;
Vêncio, Ricardo Z. N.

Publication type:

Article

Evolutionary solution for the RNA design problem.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1250, doi. 10.1093/bioinformatics/btu001

By:

Esmaili-Taheri, Ali;
Ganjtabesh, Mohammad;
Mohammad-Noori, Morteza

Publication type:

Article

estMOI: estimating multiplicity of infection using parasite deep sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1292, doi. 10.1093/bioinformatics/btu005

By:

Assefa, Samuel A.;
Preston, Mark D.;
Campino, Susana;
Ocholla, Harold;
Sutherland, Colin J.;
Clark, Taane G.

Publication type:

Article

The EBI RDF platform: linked open data for the life sciences.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1338, doi. 10.1093/bioinformatics/btt765

By:

Jupp, Simon;
Malone, James;
Bolleman, Jerven;
Brandizi, Marco;
Davies, Mark;
Garcia, Leyla;
Gaulton, Anna;
Gehant, Sebastien;
Laibe, Camille;
Redaschi, Nicole;
Wimalaratne, Sarala M.;
Martin, Maria;
Le Novère, Nicolas;
Parkinson, Helen;
Birney, Ewan;
Jenkinson, Andrew M.

Publication type:

Article

jmodeltest.org: selection of nucleotide substitution models on the cloud.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1310, doi. 10.1093/bioinformatics/btu032

By:

Santorum, Jose Manuel;
Darriba, Diego;
Taboada, Guillermo L.;
Posada, David

Publication type:

Article

Efficient haplotype matching and storage using the positional Burrows–Wheeler transform (PBWT).

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1266, doi. 10.1093/bioinformatics/btu014

By:

Durbin, Richard

Publication type:

Article

Characterizing cancer subtypes as attractors of Hopfield networks.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1273, doi. 10.1093/bioinformatics/btt773

By:

Maetschke, Stefan R.;
Ragan, Mark A.

Publication type:

Article

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1312, doi. 10.1093/bioinformatics/btu033

By:

Stamatakis, Alexandros

Publication type:

Article

MAGIC: access portal to a cross-platform gene expression compendium for maize.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1316, doi. 10.1093/bioinformatics/btt739

By:

Fu, Qiang;
Fierro, Ana Carolina;
Meysman, Pieter;
Sanchez-Rodriguez, Aminael;
Vandepoele, Klaas;
Marchal, Kathleen;
Engelen, Kristof

Publication type:

Article

PARS: a web server for the prediction of Protein Allosteric and Regulatory Sites.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1314, doi. 10.1093/bioinformatics/btu002

By:

Panjkovich, Alejandro;
Daura, Xavier

Publication type:

Article

MetDraw: automated visualization of genome-scale metabolic network reconstructions and high-throughput data.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1327, doi. 10.1093/bioinformatics/btt758

By:

Jensen, Paul A.;
Papin, Jason A.

Publication type:

Article

PANOGA: a web server for identification of SNP-targeted pathways from genome-wide association study data.

Published in:

Bioinformatics, 2014, v. 30, n. 9, p. 1287, doi. 10.1093/bioinformatics/btt743

By:

Bakir-Gungor, Burcu;
Egemen, Ece;
Sezerman, Osman Ugur

Publication type:

Article