Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 8

Results: 23

Optimization strategies for fast detection of positive selection on phylogenetic trees.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1129, doi. 10.1093/bioinformatics/btt760

By:

Valle, Mario;
Schabauer, Hannes;
Pacher, Christoph;
Stockinger, Heinz;
Stamatakis, Alexandros;
Robinson-Rechavi, Marc;
Salamin, Nicolas

Publication type:

Article

Bias from removing read duplication in ultra-deep sequencing experiments.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1073, doi. 10.1093/bioinformatics/btt771

By:

Zhou, Wanding;
Chen, Tenghui;
Zhao, Hao;
Eterovic, Agda Karina;
Meric-Bernstam, Funda;
Mills, Gordon B.;
Chen, Ken

Publication type:

Article

Improving computational efficiency and tractability of protein design using a piecemeal approach. A strategy for parallel and distributed protein design.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1138, doi. 10.1093/bioinformatics/btt735

By:

Pitman, Derek J.;
Schenkelberg, Christian D.;
Huang, Yao-Ming;
Teets, Frank D.;
DiTursi, Daniel;
Bystroff, Christopher

Publication type:

Article

AbsCN-seq: a statistical method to estimate tumor purity, ploidy and absolute copy numbers from next-generation sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1056, doi. 10.1093/bioinformatics/btt759

By:

Bao, Lei;
Pu, Minya;
Messer, Karen

Publication type:

Article

Correlations between predicted protein disorder and post-translational modifications in plants.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1095, doi. 10.1093/bioinformatics/btt762

By:

Kurotani, Atsushi;
Tokmakov, Alexander A.;
Kuroda, Yutaka;
Fukami, Yasuo;
Shinozaki, Kazuo;
Sakurai, Tetsuya

Publication type:

Article

QCGWAS: A flexible R package for automated quality control of genome-wide association results.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1185, doi. 10.1093/bioinformatics/btt745

By:

van der Most, Peter J.;
Vaez, Ahmad;
Prins, Bram P.;
Munoz, M. Loretto;
Snieder, Harold;
Alizadeh, Behrooz Z.;
Nolte, Ilja M.

Publication type:

Article

Inference with viral quasispecies diversity indices: clonal and NGS approaches.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1104, doi. 10.1093/bioinformatics/btt768

By:

Gregori, Josep;
Salicrú, Miquel;
Domingo, Esteban;
Sanchez, Alex;
Esteban, Juan I.;
Rodríguez-Frías, Francisco;
Quer, Josep

Publication type:

Article

Regional heritability advanced complex trait analysis for GPU and traditional parallel architectures.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1177, doi. 10.1093/bioinformatics/btt754

By:

Cebamanos, L.;
Gray, A.;
Stewart, I.;
Tenesa, A.

Publication type:

Article

D-Tailor: automated analysis and design of DNA sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1087, doi. 10.1093/bioinformatics/btt742

By:

Guimaraes, Joao C.;
Rocha, Miguel;
Arkin, Adam P.;
Cambray, Guillaume

Publication type:

Article

ALEA: a toolbox for allele-specific epigenomics analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1172, doi. 10.1093/bioinformatics/btt744

By:

Younesy, Hamid;
Möller, Torsten;
Heravi-Moussavi, Alireza;
Cheng, Jeffrey B.;
Costello, Joseph F.;
Lorincz, Matthew C.;
Karimi, Mohammad M.;
Jones, Steven J. M.

Publication type:

Article

CMGRN: a web server for constructing multilevel gene regulatory networks using ChIP-seq and gene expression data.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1190, doi. 10.1093/bioinformatics/btt761

By:

Guan, Daogang;
Shao, Jiaofang;
Deng, Youping;
Wang, Panwen;
Zhao, Zhongying;
Liang, Yan;
Wang, Junwen;
Yan, Bin

Publication type:

Article

FamAnn: an automated variant annotation pipeline to facilitate target discovery for family-based sequencing studies.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1175, doi. 10.1093/bioinformatics/btt749

By:

Yao, Jianchao;
Zhang, Kelvin Xi;
Kramer, Melissa;
Pellegrini, Matteo;
McCombie, W. Richard

Publication type:

Article

SNPdryad: predicting deleterious non-synonymous human SNPs using only orthologous protein sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1112, doi. 10.1093/bioinformatics/btt769

By:

Wong, Ka-Chun;
Zhang, Zhaolei

Publication type:

Article

Computational identification of protein binding sites on RNAs using high-throughput RNA structure-probing data.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1049, doi. 10.1093/bioinformatics/btt757

By:

Hu, Xihao;
Wong, Thomas K. F.;
Lu, Zhi John;
Chan, Ting Fung;
Lau, Terrence Chi Kong;
Yiu, Siu Ming;
Yip, Kevin Y.

Publication type:

Article

CAGExploreR: an R package for the analysis and visualization of promoter dynamics across multiple experiments.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1183

By:

Dimont, Emmanuel;
Hofmann, Oliver;
Ho Sui, Shannan J.;
Forrest, Alistair R. R.;
Kawaji, Hideya;
Hide, Winston

Publication type:

Article

Estimation of fluorescence-tagged RNA numbers from spot intensities.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1146, doi. 10.1093/bioinformatics/btt766

By:

Häkkinen, Antti;
Kandhavelu, Meenakshisundaram;
Garasto, Stefania;
Ribeiro, Andre S.

Publication type:

Article

Integrative analysis of histone ChIP-seq and transcription data using Bayesian mixture models.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1154, doi. 10.1093/bioinformatics/btu003

By:

Klein, Hans-Ulrich;
Schäfer, Martin;
Porse, Bo T.;
Hasemann, Marie S.;
Ickstadt, Katja;
Dugas, Martin

Publication type:

Article

DIYABC v2.0: a software to make approximate Bayesian computation inferences about population history using single nucleotide polymorphism, DNA sequence and microsatellite data.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1187, doi. 10.1093/bioinformatics/btt763

By:

Cornuet, Jean-Marie;
Pudlo, Pierre;
Veyssier, Julien;
Dehne-Garcia, Alexandre;
Gautier, Mathieu;
Leblois, Raphaël;
Marin, Jean-Michel;
Estoup, Arnaud

Publication type:

Article

Prediction of therapeutic microRNA based on the human metabolic network.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1163, doi. 10.1093/bioinformatics/btt751

By:

Wu, Ming;
Chan, Christina

Publication type:

Article

CasOT: a genome-wide Cas9/gRNA off-target searching tool.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1180, doi. 10.1093/bioinformatics/btt764

By:

Xiao, An;
Cheng, Zhenchao;
Kong, Lei;
Zhu, Zuoyan;
Lin, Shuo;
Gao, Ge;
Zhang, Bo

Publication type:

Article

Socrates: identification of genomic rearrangements in tumour genomes by re-aligning soft clipped reads.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1064, doi. 10.1093/bioinformatics/btt767

By:

Schröder, Jan;
Hsu, Arthur;
Boyle, Samantha E.;
Macintyre, Geoff;
Cmero, Marek;
Tothill, Richard W.;
Johnstone, Ricky W.;
Shackleton, Mark;
Papenfuss, Anthony T.

Publication type:

Article

SigHunt: horizontal gene transfer finder optimized for eukaryotic genomes.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1081, doi. 10.1093/bioinformatics/btt727

By:

Jaron, Kamil S.;
Moravec, Jiří C.;
Martínková, Natália

Publication type:

Article

Allerdictor: fast allergen prediction using text classification techniques.

Published in:

Bioinformatics, 2014, v. 30, n. 8, p. 1120, doi. 10.1093/bioinformatics/btu004

By:

Dang, Ha X.;
Lawrence, Christopher B.

Publication type:

Article