Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 7

Results: 35

Track data hubs enable visualization of user-defined genome-wide annotations on the UCSC Genome Browser.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1003, doi. 10.1093/bioinformatics/btt637

By:

Raney, Brian J.;
Dreszer, Timothy R.;
Barber, Galt P.;
Clawson, Hiram;
Fujita, Pauline A.;
Wang, Ting;
Nguyen, Ngan;
Paten, Benedict;
Zweig, Ann S.;
Karolchik, Donna;
Kent, W. James

Publication type:

Article

PSAR-Align: improving multiple sequence alignment using probabilistic sampling.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1010, doi. 10.1093/bioinformatics/btt636

By:

Kim, Jaebum;
Ma, Jian

Publication type:

Article

Ondex Web: web-based visualization and exploration of heterogeneous biological networks.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1034, doi. 10.1093/bioinformatics/btt740

By:

Taubert, Jan;
Hassani-Pak, Keywan;
Castells-Brooke, Nathalie;
Rawlings, Christopher J.

Publication type:

Article

BiPACE 2D—graph-based multiple alignment for comprehensive 2D gas chromatography-mass spectrometry.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 988, doi. 10.1093/bioinformatics/btt738

By:

Hoffmann, Nils;
Wilhelm, Mathias;
Doebbe, Anja;
Niehaus, Karsten;
Stoye, Jens

Publication type:

Article

Don't use a cannon to kill the … miRNA mosquito.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1047, doi. 10.1093/bioinformatics/btu100

By:

Karathanasis, Nestoras;
Tsamardinos, Ioannis;
Poirazi, Panayiota

Publication type:

Article

NeuroPID: a predictor for identifying neuropeptide precursors from metazoan proteomes.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 931, doi. 10.1093/bioinformatics/btt725

By:

Ofer, Dan;
Linial, Michal

Publication type:

Article

A divergent calponin homology (NN–CH) domain defines a novel family: implications for evolution of ciliary IFT complex B proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 899, doi. 10.1093/bioinformatics/btt661

By:

Schou, Kenneth B.;
Andersen, Jens S.;
Pedersen, Lotte B.

Publication type:

Article

Fingerprinting protein structures effectively and efficiently.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 949, doi. 10.1093/bioinformatics/btt659

By:

Cui, Xuefeng;
Li, Shuai Cheng;
He, Lin;
Li, Ming

Publication type:

Article

Assimilating genome-scale metabolic reconstructions with modelBorgifier.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1036, doi. 10.1093/bioinformatics/btt747

By:

Sauls, John T.;
Buescher, Joerg M.

Publication type:

Article

MSIsensor: microsatellite instability detection using paired tumor-normal sequence data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1015, doi. 10.1093/bioinformatics/btt755

By:

Niu, Beifang;
Ye, Kai;
Zhang, Qunyuan;
Lu, Charles;
Xie, Mingchao;
McLellan, Michael D.;
Wendl, Michael C.;
Ding, Li

Publication type:

Article

CrossMap: a versatile tool for coordinate conversion between genome assemblies.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1006, doi. 10.1093/bioinformatics/btt730

By:

Zhao, Hao;
Sun, Zhifu;
Wang, Jing;
Huang, Haojie;
Kocher, Jean-Pierre;
Wang, Liguo

Publication type:

Article

SplicePlot: a utility for visualizing splicing quantitative trait loci.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1025

By:

Wu, Eric;
Nance, Tracy;
Montgomery, Stephen B.

Publication type:

Article

A wavelet-based method to exploit epigenomic language in the regulatory region.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 908, doi. 10.1093/bioinformatics/btt467

By:

Nguyen, Nha;
Vo, An;
Won, Kyoung-Jae

Publication type:

Article

Discriminative motif optimization based on perceptron training.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 941, doi. 10.1093/bioinformatics/btt748

By:

Patel, Ronak Y.;
Stormo, Gary D.

Publication type:

Article

Site-heterogeneous mutation-selection models within the PhyloBayes-MPI package.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1020, doi. 10.1093/bioinformatics/btt729

By:

Rodrigue, Nicolas;
Lartillot, Nicolas

Publication type:

Article

Efficient clustering of identity-by-descent between multiple individuals.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 915, doi. 10.1093/bioinformatics/btt734

By:

Qian, Yu;
Browning, Brian L.;
Browning, Sharon R.

Publication type:

Article

SBML and CellML translation in Antimony and JSim.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 903, doi. 10.1093/bioinformatics/btt641

By:

Smith, Lucian P.;
Butterworth, Erik;
Bassingthwaighte, James B.;
Sauro, Herbert M.

Publication type:

Article

JEPETTO: a Cytoscape plugin for gene set enrichment and topological analysis based on interaction networks.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1029, doi. 10.1093/bioinformatics/btt732

By:

Winterhalter, Charles;
Widera, Paweł;
Krasnogor, Natalio

Publication type:

Article

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 923, doi. 10.1093/bioinformatics/btt656

By:

Liao, Yang;
Smyth, Gordon K.;
Shi, Wei

Publication type:

Article

Parallel content-based sub-image retrieval using hierarchical searching.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 996, doi. 10.1093/bioinformatics/btt623

By:

Yang, Lin;
Qi, Xin;
Xing, Fuyong;
Kurc, Tahsin;
Saltz, Joel;
Foran, David J.

Publication type:

Article

WiggleTools: parallel processing of large collections of genome-wide datasets for visualization and statistical analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1008, doi. 10.1093/bioinformatics/btt737

By:

Zerbino, Daniel R.;
Johnson, Nathan;
Juettemann, Thomas;
Wilder, Steven P.;
Flicek, Paul

Publication type:

Article

RelateAdmix: a software tool for estimating relatedness between admixed individuals.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1027, doi. 10.1093/bioinformatics/btt652

By:

Moltke, Ida;
Albrechtsen, Anders

Publication type:

Article

ASSIST: a fast versatile local structural comparison tool.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1022, doi. 10.1093/bioinformatics/btt664

By:

Caprari, Silvia;
Toti, Daniele;
Viet Hung, Le;
Di Stefano, Maurizio;
Polticelli, Fabio

Publication type:

Article

LipidGO: database for lipid-related GO terms and applications.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1043, doi. 10.1093/bioinformatics/btt689

By:

Fan, Mengyuan;
Low, Hong Sang;
Zhou, Hufeng;
Wenk, Markus R.;
Wong, Limsoon

Publication type:

Article

CheNER: chemical named entity recognizer.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1039, doi. 10.1093/bioinformatics/btt639

By:

Usié, Anabel;
Alves, Rui;
Solsona, Francesc;
Vázquez, Miguel;
Valencia, Alfonso

Publication type:

Article

Refining carbon flux paths using atomic trace data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 975, doi. 10.1093/bioinformatics/btt653

By:

Pey, Jon;
Planes, Francisco J.;
Beasley, John E.

Publication type:

Article

AVIA: an interactive web-server for annotation, visualization and impact analysis of genomic variations.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1013, doi. 10.1093/bioinformatics/btt655

By:

Vuong, Hue;
Stephens, Robert M.;
Volfovsky, Natalia

Publication type:

Article

Wigwams: identifying gene modules co-regulated across multiple biological conditions.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 962, doi. 10.1093/bioinformatics/btt728

By:

Polanski, Krzysztof;
Rhodes, Johanna;
Hill, Claire;
Zhang, Peijun;
Jenkins, Dafyd J.;
Kiddle, Steven J.;
Jironkin, Aleksey;
Beynon, Jim;
Buchanan-Wollaston, Vicky;
Ott, Sascha;
Denby, Katherine J.

Publication type:

Article

GPU-Meta-Storms: computing the structure similarities among massive amount of microbial community samples using GPU.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1031

By:

Su, Xiaoquan;
Wang, Xuetao;
Jing, Gongchao;
Ning, Kang

Publication type:

Article

ClockstaR: choosing the number of relaxed-clock models in molecular phylogenetic analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1017

By:

Duchêne, Sebastián;
Molak, Martyna;
Ho, Simon Y. W.

Publication type:

Article

SurpriseMe: an integrated tool for network community structure characterization using Surprise maximization.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1041, doi. 10.1093/bioinformatics/btt741

By:

Aldecoa, Rodrigo;
Marín, Ignacio

Publication type:

Article

tasiRNAdb: a database of ta-siRNA regulatory pathways.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 1045, doi. 10.1093/bioinformatics/btt746

By:

Zhang, Changqing;
Li, Guangping;
Zhu, Shinong;
Zhang, Shuo;
Fang, Jinggui

Publication type:

Article

PLIDA: cross-platform gene expression normalization using perturbed topic models.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 956, doi. 10.1093/bioinformatics/btt574

By:

Deshwar, Amit G.;
Morris, Quaid

Publication type:

Article

FastPros: screening of reaction knockout strategies for metabolic engineering.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 981, doi. 10.1093/bioinformatics/btt672

By:

Ohno, Satoshi;
Shimizu, Hiroshi;
Furusawa, Chikara

Publication type:

Article

TSSer: an automated method to identify transcription start sites in prokaryotic genomes from differential RNA sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 7, p. 971, doi. 10.1093/bioinformatics/btt752

By:

Jorjani, Hadi;
Zavolan, Mihaela

Publication type:

Article