Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 3

Results: 24

HomSI: a homozygous stretch identifier from next-generation sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 445, doi. 10.1093/bioinformatics/btt686

By:

Görmez, Zeliha;
Bakir-Gungor, Burcu;
Sağıroğlu, Mahmut Şamil

Publication type:

Article

DiSWOP: a novel measure for cell-level protein network analysis in localized proteomics image data.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 420, doi. 10.1093/bioinformatics/btt676

By:

Kovacheva, Violeta N.;
Khan, Adnan M.;
Khan, Michael;
Epstein, David B. A.;
Rajpoot, Nasir M.

Publication type:

Article

RNA-seq differential expression studies: more sequence or more replication?

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 301, doi. 10.1093/bioinformatics/btt688

By:

Liu, Yuwen;
Zhou, Jie;
White, Kevin P.

Publication type:

Article

Gene Sets Net Correlations Analysis (GSNCA): a multivariate differential coexpression test for gene sets.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 360, doi. 10.1093/bioinformatics/btt687

By:

Rahmatallah, Yasir;
Emmert-Streib, Frank;
Glazko, Galina

Publication type:

Article

ABACUS: an entropy-based cumulative bivariate statistic robust to rare variants and different direction of genotype effect.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 384, doi. 10.1093/bioinformatics/btt697

By:

Di Camillo, Barbara;
Sambo, Francesco;
Toffolo, Gianna;
Cobelli, Claudio

Publication type:

Article

DDGni: Dynamic delay gene-network inference from high-temporal data using gapped local alignment.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 377, doi. 10.1093/bioinformatics/btt692

By:

Yalamanchili, Hari Krishna;
Yan, Bin;
Li, Mulin Jun;
Qin, Jing;
Zhao, Zhongying;
Chin, Francis Y.L.;
Wang, Junwen

Publication type:

Article

AISAIC: a software suite for accurate identification of significant aberrations in cancers.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 431, doi. 10.1093/bioinformatics/btt693

By:

Zhang, Bai;
Hou, Xuchu;
Yuan, Xiguo;
Shih, Ie-Ming;
Zhang, Zhen;
Clarke, Robert;
Wang, Roger R.;
Fu, Yi;
Madhavan, Subha;
Wang, Yue;
Yu, Guoqiang

Publication type:

Article

In silico site of metabolism prediction for human UGT-catalyzed reactions.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 398, doi. 10.1093/bioinformatics/btt681

By:

Peng, Jianlong;
Lu, Jing;
Shen, Qiancheng;
Zheng, Mingyue;
Luo, Xiaomin;
Zhu, Weiliang;
Jiang, Hualiang;
Chen, Kaixian

Publication type:

Article

Exact likelihood computation in Boolean networks with probabilistic time delays, and its application in signal network reconstruction.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 414

By:

Dümcke, Sebastian;
Bräuer, Johannes;
Anchang, Benedict;
Spang, Rainer;
Beerenwinkel, Niko;
Tresch, Achim

Publication type:

Article

HEFT: eQTL analysis of many thousands of expressed genes while simultaneously controlling for hidden factors.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 369, doi. 10.1093/bioinformatics/btt690

By:

Gao, Chuan;
Tignor, Nicole L.;
Salit, Jacqueline;
Strulovici-Barel, Yael;
Hackett, Neil R.;
Crystal, Ronald G.;
Mezey, Jason G.

Publication type:

Article

ChAMP: 450k Chip Analysis Methylation Pipeline.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 428, doi. 10.1093/bioinformatics/btt684

By:

Morris, Tiffany J.;
Butcher, Lee M.;
Feber, Andrew;
Teschendorff, Andrew E.;
Chakravarthy, Ankur R.;
Wojdacz, Tomasz K.;
Beck, Stephan

Publication type:

Article

jMetalCpp: optimizing molecular docking problems with a C++ metaheuristic framework.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 437, doi. 10.1093/bioinformatics/btt679

By:

López-Camacho, Esteban;
García Godoy, María Jesús;
Nebro, Antonio J.;
Aldana-Montes, José F.

Publication type:

Article

Revisiting amino acid substitution matrices for identifying distantly related proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 317, doi. 10.1093/bioinformatics/btt694

By:

Yamada, Kazunori;
Tomii, Kentaro

Publication type:

Article

MemBuilder: a web-based graphical interface to build heterogeneously mixed membrane bilayers for the GROMACS biomolecular simulation program.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 439, doi. 10.1093/bioinformatics/btt680

By:

Ghahremanpour, Mohammad Mehdi;
Arab, Seyed Shahriar;
Aghazadeh, Saman Biook;
Zhang, Jin;
van der Spoel, David

Publication type:

Article

Coarse-grained versus atomistic simulations: realistic interaction free energies for real proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 326, doi. 10.1093/bioinformatics/btt675

By:

May, Ali;
Pool, René;
van Dijk, Erik;
Bijlard, Jochem;
Abeln, Sanne;
Heringa, Jaap;
Feenstra, K. Anton

Publication type:

Article

mCSM: predicting the effects of mutations in proteins using graph-based signatures.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 335, doi. 10.1093/bioinformatics/btt691

By:

Pires, Douglas E. V.;
Ascher, David B.;
Blundell, Tom L.

Publication type:

Article

PhenoMan: phenotypic data exploration, selection, management and quality control for association studies of rare and common variants.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 442

By:

Li, Biao;
Wang, Gao;
Leal, Suzanne M.

Publication type:

Article

Identification of transcription factors for drug-associated gene modules and biomedical implications.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 305, doi. 10.1093/bioinformatics/btt683

By:

Xiong, Min;
Li, Bin;
Zhu, Qiang;
Wang, Yun-Xing;
Zhang, Hong-Yu

Publication type:

Article

A mathematical model describing the mechanical kinetics of kinesin stepping.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 353, doi. 10.1093/bioinformatics/btt698

By:

Khataee, Hamidreza;
Wee-Chung Liew, Alan

Publication type:

Article

Accessibility of microRNA binding sites in metastable RNA secondary structures in the presence of SNPs.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 343, doi. 10.1093/bioinformatics/btt695

By:

Day, Luke;
Abdelhadi Ep Souki, Ouala;
Albrecht, Andreas A.;
Steinhöfel, Kathleen

Publication type:

Article

Protein-driven inference of miRNA–disease associations.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 392, doi. 10.1093/bioinformatics/btt677

By:

Mørk, Søren;
Pletscher-Frankild, Sune;
Palleja Caro, Albert;
Gorodkin, Jan;
Jensen, Lars Juhl

Publication type:

Article

Spatial regulation dominates gene function in the ganglia chain.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 310, doi. 10.1093/bioinformatics/btt570

By:

Hibsh, Dror;
Schori, Hadas;
Efroni, Sol;
Shefi, Orit

Publication type:

Article

ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 434, doi. 10.1093/bioinformatics/btt678

By:

Luo, Guan-Zheng;
Yang, Wei;
Ma, Ying-Ke;
Wang, Xiu-Jie

Publication type:

Article

Genes related to differentiation are correlated with the gene regulatory network structure.

Published in:

Bioinformatics, 2014, v. 30, n. 3, p. 406, doi. 10.1093/bioinformatics/btt685

By:

Bodaker, Matan;
Meshorer, Eran;
Mitrani, Eduardo;
Louzoun, Yoram

Publication type:

Article