Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 23

Results: 33

Cell population identification using fluorescence-minus-one controls with a one-class classifying algorithm.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3372, doi. 10.1093/bioinformatics/btu575

By:

Feher, Kristen;
Kirsch, Jenny;
Radbruch, Andreas;
Chang, Hyun-Dong;
Kaiser, Toralf

Publication type:

Article

FACTERA: a practical method for the discovery of genomic rearrangements at breakpoint resolution.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3390, doi. 10.1093/bioinformatics/btu549

By:

Newman, Aaron M.;
Bratman, Scott V.;
Stehr, Henning;
Lee, Luke J.;
Liu, Chih Long;
Diehn, Maximilian;
Alizadeh, Ash A.

Publication type:

Article

A novel feature-based approach to extract drug–drug interactions from biomedical text.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3365, doi. 10.1093/bioinformatics/btu557

By:

Bui, Quoc-Chinh;
Sloot, Peter M.A.;
van Mulligen, Erik M.;
Kors, Jan A.

Publication type:

Article

Comparative assembly hubs: Web-accessible browsers for comparative genomics.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3293, doi. 10.1093/bioinformatics/btu534

By:

Nguyen, Ngan;
Hickey, Glenn;
Raney, Brian J.;
Armstrong, Joel;
Clawson, Hiram;
Zweig, Ann;
Karolchik, Donna;
Kent, William James;
Haussler, David;
Paten, Benedict

Publication type:

Article

Modeling dynamic functional relationship networks and application to ex vivo human erythroid differentiation.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3325, doi. 10.1093/bioinformatics/btu542

By:

Zhu, Fan;
Shi, Lihong;
Li, Hongdong;
Eksi, Ridvan;
Engel, James Douglas;
Guan, Yuanfang

Publication type:

Article

Cordova: Web-based management of genetic variation data.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3438, doi. 10.1093/bioinformatics/btu539

By:

Ephraim, Sean S.;
Anand, Nikhil;
DeLuca, Adam P.;
Taylor, Kyle R.;
Kolbe, Diana L.;
Simpson, Allen C.;
Azaiez, Hela;
Sloan, Christina M.;
Shearer, A. Eliot;
Hallier, Andrea R.;
Casavant, Thomas L.;
Scheetz, Todd E.;
Smith, Richard J. H.;
Braun, Terry A.

Publication type:

Article

MethylAid: visual and interactive quality control of large Illumina 450k datasets.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3435, doi. 10.1093/bioinformatics/btu566

By:

van Iterson, Maarten;
Tobi, Elmar W.;
Slieker, Roderick C.;
den Hollander, Wouter;
Luijk, René;
Slagboom, P. Eline;
Heijmans, Bastiaan T.

Publication type:

Article

PyBamView: a browser-based application for viewing short read alignments.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3405, doi. 10.1093/bioinformatics/btu565

By:

Gymrek, Melissa

Publication type:

Article

diCal-IBD: demography-aware inference of identity-by-descent tracts in unrelated individuals.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3430, doi. 10.1093/bioinformatics/btu563

By:

Tataru, Paula;
Nirody, Jasmine A.;
Song, Yun S.

Publication type:

Article

Visualization of protein sequence features using JavaScript and SVG with pViz.js.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3408, doi. 10.1093/bioinformatics/btu567

By:

Mukhyala, Kiran;
Masselot, Alexandre

Publication type:

Article

subSeq: Determining Appropriate Sequencing Depth Through Efficient Read Subsampling.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3424, doi. 10.1093/bioinformatics/btu552

By:

Robinson, David G.;
Storey, John D.

Publication type:

Article

HapMuC: somatic mutation calling using heterozygous germ line variants near candidate mutations.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3302, doi. 10.1093/bioinformatics/btu537

By:

Usuyama, Naoto;
Shiraishi, Yuichi;
Sato, Yusuke;
Kume, Haruki;
Homma, Yukio;
Ogawa, Seishi;
Miyano, Satoru;
Imoto, Seiya

Publication type:

Article

Quartet Inference from SNP Data Under the Coalescent Model.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3317, doi. 10.1093/bioinformatics/btu530

By:

Chifman, Julia;
Kubatko, Laura

Publication type:

Article

ProtocolNavigator: emulation-based software for the design, documentation and reproduction biological experiments.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3440, doi. 10.1093/bioinformatics/btu554

By:

Khan, Imtiaz A.;
Fraser, Adam;
Bray, Mark-Anthony;
Smith, Paul J.;
White, Nick S.;
Carpenter, Anne E.;
Errington, Rachel J.

Publication type:

Article

PHOXTRACK–a tool for interpreting comprehensive datasets of post-translational modifications of proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3410, doi. 10.1093/bioinformatics/btu572

By:

Weidner, Christopher;
Fischer, Cornelius;
Sauer, Sascha

Publication type:

Article

Cosi2: an efficient simulator of exact and approximate coalescent with selection.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3427, doi. 10.1093/bioinformatics/btu562

By:

Shlyakhter, Ilya;
Sabeti, Pardis C.;
Schaffner, Stephen F.

Publication type:

Article

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3356, doi. 10.1093/bioinformatics/btu550

By:

Hooper, Cornelia M.;
Tanz, Sandra K.;
Castleden, Ian R.;
Vacher, Michael A.;
Small, Ian D.;
Millar, A. Harvey

Publication type:

Article

MIRPIPE: quantification of microRNAs in niche model organisms.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3412, doi. 10.1093/bioinformatics/btu573

By:

Kuenne, Carsten;
Preussner, Jens;
Herzog, Mario;
Braun, Thomas;
Looso, Mario

Publication type:

Article

ExpTreeDB: Web-based query and visualization of manually annotated gene expression profiling experiments of human and mouse from GEO.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3379, doi. 10.1093/bioinformatics/btu560

By:

Ni, Ming;
Ye, Fuqiang;
Zhu, Juanjuan;
Li, Zongwei;
Yang, Shuai;
Yang, Bite;
Han, Lu;
Wu, Yongge;
Chen, Ying;
Li, Fei;
Wang, Shengqi;
Bo, Xiaochen

Publication type:

Article

MR_predictor: a simulation engine for Mendelian Randomization studies.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3432, doi. 10.1093/bioinformatics/btu564

By:

Voight, Benjamin F.

Publication type:

Article

NetComm: a network analysis tool based on communicability.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3387, doi. 10.1093/bioinformatics/btu536

By:

Campbell, Ian M.;
James, Regis A.;
Chen, Edward S.;
Shaw, Chad A.

Publication type:

Article

Pepper: cytoscape app for protein complex expansion using protein–protein interaction networks.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3419, doi. 10.1093/bioinformatics/btu517

By:

Winterhalter, C.;
Nicolle, R.;
Louis, A.;
To, C.;
Radvanyi, F.;
Elati, M.

Publication type:

Article

Cross-validation under separate sampling: strong bias and how to correct it.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3349, doi. 10.1093/bioinformatics/btu527

By:

Braga-Neto, Ulisses M.;
Zollanvari, Amin;
Dougherty, Edward R.

Publication type:

Article

SCDFinder, a Web-based tool for the identification of putative novel ATM and ATR targets.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3394, doi. 10.1093/bioinformatics/btu551

By:

Cara, Lukas;
Baitemirova, Medina;
Duong, Franklin;
Larios-Sanz, Maia;
Ribes-Zamora, Albert

Publication type:

Article

RVboost: RNA-seq variants prioritization using a boosting method.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3414, doi. 10.1093/bioinformatics/btu577

By:

Wang, Chen;
Davila, Jaime I.;
Baheti, Saurabh;
Bhagwate, Aditya V.;
Wang, Xue;
Kocher, Jean-Pierre A.;
Slager, Susan L.;
Feldman, Andrew L.;
Novak, Anne J.;
Cerhan, James R.;
Thompson, E. Aubrey;
Asmann, Yan W.

Publication type:

Article

GlycoPattern: a web platform for glycan array mining.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3417, doi. 10.1093/bioinformatics/btu559

By:

Agravat, Sanjay B.;
Saltz, Joel H.;
Cummings, Richard D.;
Smith, David F.

Publication type:

Article

BioBloom tools: fast, accurate and memory-efficient host species sequence screening using bloom filters.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3402, doi. 10.1093/bioinformatics/btu558

By:

Chu, Justin;
Sadeghi, Sara;
Raymond, Anthony;
Jackman, Shaun D.;
Nip, Ka Ming;
Mar, Richard;
Mohamadi, Hamid;
Butterfield, Yaron S.;
Robertson, A. Gordon;
Birol, Inanç

Publication type:

Article

Acceleration of short and long DNA read mapping without loss of accuracy using suffix array.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3396

By:

Tárraga, Joaquín;
Arnau, Vicente;
Martínez, Héctor;
Moreno, Raul;
Cazorla, Diego;
Salavert-Torres, José;
Blanquer-Espert, Ignacio;
Dopazo, Joaquín;
Medina, Ignacio

Publication type:

Article

OptiType: precision HLA typing from next-generation sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3310, doi. 10.1093/bioinformatics/btu548

By:

Szolek, András;
Schubert, Benjamin;
Mohr, Christopher;
Sturm, Marc;
Feldhahn, Magdalena;
Kohlbacher, Oliver

Publication type:

Article

SecureMA: protecting participant privacy in genetic association meta-analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3334, doi. 10.1093/bioinformatics/btu561

By:

Xie, Wei;
Kantarcioglu, Murat;
Bush, William S.;
Crawford, Dana;
Denny, Joshua C.;
Heatherly, Raymond;
Malin, Bradley A.

Publication type:

Article

Poretools: a toolkit for analyzing nanopore sequence data.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3399, doi. 10.1093/bioinformatics/btu555

By:

Loman, Nicholas J.;
Quinlan, Aaron R.

Publication type:

Article

VSEAMS: a pipeline for variant set enrichment analysis using summary GWAS data identifies IKZF3, BATF and ESRRA as key transcription factors in type 1 diabetes.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3342, doi. 10.1093/bioinformatics/btu571

By:

Burren, Oliver S.;
Guo, Hui;
Wallace, Chris

Publication type:

Article

READemption—a tool for the computational analysis of deep-sequencing–based transcriptome data.

Published in:

Bioinformatics, 2014, v. 30, n. 23, p. 3421, doi. 10.1093/bioinformatics/btu533

By:

Förstner, Konrad U.;
Vogel, Jörg;
Sharma, Cynthia M.

Publication type:

Article