Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 21

Results: 27

GlycoDigest: a tool for the targeted use of exoglycosidase digestions in glycan structure determination.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3131, doi. 10.1093/bioinformatics/btu425

By:

Gotz, Lou;
Abrahams, Jodie L.;
Mariethoz, Julien;
Rudd, Pauline M.;
Karlsson, Niclas G.;
Packer, Nicolle H.;
Campbell, Matthew P.;
Lisacek, Frederique

Publication type:

Article

Comparison of the mammalian insulin signalling pathway to invertebrates in the context of FOXO-mediated ageing.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 2999, doi. 10.1093/bioinformatics/btu493

By:

Papatheodorou, Irene;
Petrovs, Rudolfs;
Thornton, Janet M.

Publication type:

Article

Modeling time-dependent transcription effects of HER2 oncogene and discovery of a role for E2F2 in breast cancer cell-matrix adhesion.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3036, doi. 10.1093/bioinformatics/btu400

By:

Bollig-Fischer, Aliccia;
Marchetti, Luca;
Mitrea, Cristina;
Wu, Jiusheng;
Kruger, Adéle;
Manca, Vincenzo;
Drăghici, Sorin

Publication type:

Article

Inferring condition-specific miRNA activity from matched miRNA and mRNA expression data.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3070, doi. 10.1093/bioinformatics/btu489

By:

Zhang, Junpeng;
Le, Thuc Duy;
Liu, Lin;
Liu, Bing;
He, Jianfeng;
Goodall, Gregory J.;
Li, Jiuyong

Publication type:

Article

Circleator: flexible circular visualization of genome-associated data with BioPerl and SVG.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3125, doi. 10.1093/bioinformatics/btu505

By:

Crabtree, Jonathan;
Agrawal, Sonia;
Mahurkar, Anup;
Myers, Garry S.;
Rasko, David A.;
White, Owen

Publication type:

Article

lrgpr: interactive linear mixed model analysis of genome-wide association studies with composite hypothesis testing and regression diagnostics in R.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3134, doi. 10.1093/bioinformatics/btu435

By:

Hoffman, Gabriel E.;
Mezey, Jason G.;
Schadt, Eric E.

Publication type:

Article

MToolBox: a highly automated pipeline for heteroplasmy annotation and prioritization analysis of human mitochondrial variants in high-throughput sequencing.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3115, doi. 10.1093/bioinformatics/btu483

By:

Calabrese, Claudia;
Simone, Domenico;
Diroma, Maria Angela;
Santorsola, Mariangela;
Guttà, Cristiano;
Gasparre, Giuseppe;
Picardi, Ernesto;
Pesole, Graziano;
Attimonelli, Marcella

Publication type:

Article

FISH: fast and accurate diploid genotype imputation via segmental hidden Markov model.

Published in:

2014

By:

Zhang, Lei;
Pei, Yu-Fang;
Fu, Xiaoying;
Lin, Yong;
Wang, Yu-Ping;
Deng, Hong-Wen

Publication type:

Correction Notice

proovread: large-scale high-accuracy PacBio correction through iterative short read consensus.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3004, doi. 10.1093/bioinformatics/btu392

By:

Hackl, Thomas;
Hedrich, Rainer;
Schultz, Jörg;
Förster, Frank

Publication type:

Article

Biocellion: accelerating computer simulation of multicellular biological system models.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3101, doi. 10.1093/bioinformatics/btu498

By:

Kang, Seunghwa;
Kahan, Simon;
McDermott, Jason;
Flann, Nicholas;
Shmulevich, Ilya

Publication type:

Article

STAMP: statistical analysis of taxonomic and functional profiles.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3123, doi. 10.1093/bioinformatics/btu494

By:

Parks, Donovan H.;
Tyson, Gene W.;
Hugenholtz, Philip;
Beiko, Robert G.

Publication type:

Article

ASP-G: an ASP-based method for finding attractors in genetic regulatory networks.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3086, doi. 10.1093/bioinformatics/btu481

By:

Mushthofa, Mushthofa;
Torres, Gustavo;
Van de Peer, Yves;
Marchal, Kathleen;
De Cock, Martine

Publication type:

Article

CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3029, doi. 10.1093/bioinformatics/btu502

By:

Wood, Christopher W.;
Bruning, Marc;
Ibarra, Amaurys Á.;
Bartlett, Gail J.;
Thomson, Andrew R.;
Sessions, Richard B.;
Brady, R Leo;
Woolfson, Derek N.

Publication type:

Article

AffyPipe: an open-source pipeline for Affymetrix Axiom genotyping workflow.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3118, doi. 10.1093/bioinformatics/btu486

By:

Nicolazzi, Ezequiel L.;
Iamartino, Daniela;
Williams, John L.

Publication type:

Article

A new approach for detecting riboswitches in DNA sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3012, doi. 10.1093/bioinformatics/btu479

By:

Havill, Jessen T.;
Bhatiya, Chinmoy;
Johnson, Steven M.;
Sheets, Joseph D.;
Thompson, Jeffrey S.

Publication type:

Article

sapFinder: an R/Bioconductor package for detection of variant peptides in shotgun proteomics experiments.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3136, doi. 10.1093/bioinformatics/btu397

By:

Wen, Bo;
Xu, Shaohang;
Sheynkman, Gloria M.;
Feng, Qiang;
Lin, Liang;
Wang, Quanhui;
Xu, Xun;
Wang, Jun;
Liu, Siqi

Publication type:

Article

Monte Carlo algorithms for Brownian phylogenetic models.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3020, doi. 10.1093/bioinformatics/btu485

By:

Horvilleur, Benjamin;
Lartillot, Nicolas

Publication type:

Article

NetPathMiner: R/Bioconductor package for network path mining through gene expression.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3139, doi. 10.1093/bioinformatics/btu501

By:

Mohamed, Ahmed;
Hancock, Timothy;
Nguyen, Canh Hao;
Mamitsuka, Hiroshi

Publication type:

Article

FisHiCal: an R package for iterative FISH-based calibration of Hi-C data.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3120, doi. 10.1093/bioinformatics/btu491

By:

Shavit, Yoli;
Hamey, Fiona Kathryn;
Lio, Pietro

Publication type:

Article

e-Driver: a novel method to identify protein regions driving cancer.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3109, doi. 10.1093/bioinformatics/btu499

By:

Porta-Pardo, Eduard;
Godzik, Adam

Publication type:

Article

CCMpred—fast and precise prediction of protein residue–residue contacts from correlated mutations.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3128, doi. 10.1093/bioinformatics/btu500

By:

Seemayer, Stefan;
Gruber, Markus;
Söding, Johannes

Publication type:

Article

An improved method for computing q-values when the distribution of effect sizes is asymmetric.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3044, doi. 10.1093/bioinformatics/btu432

By:

Orr, Megan;
Liu, Peng;
Nettleton, Dan

Publication type:

Article

Network-based analysis identifies epigenetic biomarkers of esophageal squamous cell carcinoma progression.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3054, doi. 10.1093/bioinformatics/btu433

By:

Cheng, Chun-Pei;
Kuo, I-Ying;
Alakus, Hakan;
Frazer, Kelly A.;
Harismendy, Olivier;
Wang, Yi-Ching;
Tseng, Vincent S.

Publication type:

Article

Compression and fast retrieval of SNP data.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3078, doi. 10.1093/bioinformatics/btu495

By:

Sambo, Francesco;
Di Camillo, Barbara;
Toffolo, Gianna;
Cobelli, Claudio

Publication type:

Article

Systematic analysis of gene properties influencing organ system phenotypes in mammalian perturbations.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3093, doi. 10.1093/bioinformatics/btu487

By:

Vogt, Ingo;
Prinz, Jeanette;
Worf, Karolina;
Campillos, Monica

Publication type:

Article

Más-o-menos: a simple sign averaging method for discrimination in genomic data analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 3062, doi. 10.1093/bioinformatics/btu488

By:

Zhao, Sihai Dave;
Parmigiani, Giovanni;
Huttenhower, Curtis;
Waldron, Levi

Publication type:

Article

Big data and other challenges in the quest for orthologs.

Published in:

Bioinformatics, 2014, v. 30, n. 21, p. 2993

By:

Sonnhammer, Erik L.L.;
Gabaldón, Toni;
Sousa da Silva, Alan W.;
Martin, Maria;
Robinson-Rechavi, Marc;
Boeckmann, Brigitte;
Thomas, Paul D.;
Dessimoz, Christophe

Publication type:

Article