Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 2

Results: 24

SeqDepot: streamlined database of biological sequences and precomputed features.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 295, doi. 10.1093/bioinformatics/btt658

By:

Ulrich, Luke E.;
Zhulin, Igor B.

Publication type:

Article

A novel splicing outcome reveals more than 2000 new mammalian protein isoforms.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 151, doi. 10.1093/bioinformatics/btt668

By:

Wilson, Laurence O. W.;
Spriggs, Andrew;
Taylor, Jennifer M.;
Fahrer, Aude M.

Publication type:

Article

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 165, doi. 10.1093/bioinformatics/btt667

By:

Waszak, Sebastian M.;
Kilpinen, Helena;
Gschwind, Andreas R.;
Orioli, Andrea;
Raghav, Sunil K.;
Witwicki, Robert M.;
Migliavacca, Eugenia;
Yurovsky, Alisa;
Lappalainen, Tuuli;
Hernandez, Nouria;
Reymond, Alexandre;
Dermitzakis, Emmanouil T.;
Deplancke, Bart

Publication type:

Article

HPC-CLUST: distributed hierarchical clustering for large sets of nucleotide sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 287, doi. 10.1093/bioinformatics/btt657

By:

Matias Rodrigues, João F.;
von Mering, Christian

Publication type:

Article

DoMosaics: software for domain arrangement visualization and domain-centric analysis of proteins.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 282, doi. 10.1093/bioinformatics/btt640

By:

Moore, Andrew D.;
Held, Andreas;
Terrapon, Nicolas;
Weiner, January;
Bornberg-Bauer, Erich

Publication type:

Article

Model-based clustering for RNA-seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 197, doi. 10.1093/bioinformatics/btt632

By:

Si, Yaqing;
Liu, Peng;
Li, Pinghua;
Brutnell, Thomas P.

Publication type:

Article

myChEMBL: a virtual machine implementation of open data and cheminformatics tools.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 298, doi. 10.1093/bioinformatics/btt666

By:

Ochoa, Rodrigo;
Davies, Mark;
Papadatos, George;
Atkinson, Francis;
Overington, John P.

Publication type:

Article

footprintDB: a database of transcription factors with annotated cis elements and binding interfaces.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 258, doi. 10.1093/bioinformatics/btt663

By:

Sebastian, Alvaro;
Contreras-Moreira, Bruno

Publication type:

Article

Fast pairwise IBD association testing in genome-wide association studies.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 206, doi. 10.1093/bioinformatics/btt609

By:

Han, Buhm;
Kang, Eun Yong;
Raychaudhuri, Soumya;
de Bakker, Paul I. W.;
Eskin, Eleazar

Publication type:

Article

PTMTreeSearch: a novel two-stage tree-search algorithm with pruning rules for the identification of post-translational modification of proteins in MS/MS spectra.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 234

By:

Kertész-Farkas, Attila;
Reiz, Beáta;
Vera, Roberto;
Myers, Michael P.;
Pongor, Sándor

Publication type:

Article

Finding consistent disease subnetworks using PFSNet.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 189, doi. 10.1093/bioinformatics/btt625

By:

Lim, Kevin;
Wong, Limsoon

Publication type:

Article

A classification approach for DNA methylation profiling with bisulfite next-generation sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 172, doi. 10.1093/bioinformatics/btt674

By:

Cheng, Longjie;
Zhu, Yu

Publication type:

Article

Testing multiple biological mediators simultaneously.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 214, doi. 10.1093/bioinformatics/btt633

By:

Boca, Simina M.;
Sinha, Rashmi;
Cross, Amanda J.;
Moore, Steven C.;
Sampson, Joshua N.

Publication type:

Article

Topological augmentation to infer hidden processes in biological systems.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 221

By:

Sunnåker, Mikael;
Zamora-Sillero, Elias;
López García de Lomana, Adrián;
Rudroff, Florian;
Sauer, Uwe;
Stelling, Joerg;
Wagner, Andreas

Publication type:

Article

Development of a domain-specific genetic language to design Chlamydomonas reinhardtii expression vectors.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 251, doi. 10.1093/bioinformatics/btt646

By:

Wilson, Mandy L.;
Okumoto, Sakiko;
Adam, Laura;
Peccoud, Jean

Publication type:

Article

On the simultaneous association analysis of large genomic regions: a massive multi-locus association test.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 157, doi. 10.1093/bioinformatics/btt654

By:

Qiao, Dandi;
Cho, Michael H.;
Fier, Heide;
Bakke, Per S.;
Gulsvik, Amund;
Silverman, Edwin K.;
Lange, Christoph

Publication type:

Article

Effect of separate sampling on classification accuracy.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 242, doi. 10.1093/bioinformatics/btt662

By:

Shahrokh Esfahani, Mohammad;
Dougherty, Edward R.

Publication type:

Article

Combining optimization and machine learning techniques for genome-wide prediction of human cell cycle-regulated genes.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 228, doi. 10.1093/bioinformatics/btt671

By:

De Santis, Marianna;
Rinaldi, Francesco;
Falcone, Emmanuela;
Lucidi, Stefano;
Piaggio, Giulia;
Gurtner, Aymone;
Farina, Lorenzo

Publication type:

Article

Pathway Commons at Virtual Cell: use of pathway data for mathematical modeling.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 292, doi. 10.1093/bioinformatics/btt660

By:

Blinov, Michael L.;
Schaff, James C.;
Ruebenacker, Oliver;
Wei, Xintao;
Vasilescu, Dan;
Gao, Fei;
Morgan, Frank;
Ye, Li;
Lakshminarayana, Anuradha;
Moraru, Ion I.;
Loew, Leslie M.

Publication type:

Article

Automated annotation of developmental stages of Drosophila embryos in images containing spatial patterns of expression.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 266, doi. 10.1093/bioinformatics/btt648

By:

Yuan, Lei;
Pan, Cheng;
Ji, Shuiwang;
McCutchan, Michael;
Zhou, Zhi-Hua;
Newfeld, Stuart J.;
Kumar, Sudhir;
Ye, Jieping

Publication type:

Article

Rapid similarity search of proteins using alignments of domain arrangements.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 274, doi. 10.1093/bioinformatics/btt379

By:

Terrapon, Nicolas;
Weiner, January;
Grath, Sonja;
Moore, Andrew D.;
Bornberg-Bauer, Erich

Publication type:

Article

MEDIPS: genome-wide differential coverage analysis of sequencing data derived from DNA enrichment experiments.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 284, doi. 10.1093/bioinformatics/btt650

By:

Lienhard, Matthias;
Grimm, Christina;
Morkel, Markus;
Herwig, Ralf;
Chavez, Lukas

Publication type:

Article

tRanslatome: an R/Bioconductor package to portray translational control.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 289, doi. 10.1093/bioinformatics/btt634

By:

Tebaldi, Toma;
Dassi, Erik;
Kostoska, Galena;
Viero, Gabriella;
Quattrone, Alessandro

Publication type:

Article

Flexible analysis of RNA-seq data using mixed effects models.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 180, doi. 10.1093/bioinformatics/btt624

By:

Turro, Ernest;
Astle, William J.;
Tavaré, Simon

Publication type:

Article