Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 19

Results: 29

Preserving biological heterogeneity with a permuted surrogate variable analysis for genomics batch correction.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2757, doi. 10.1093/bioinformatics/btu375

By:

Parker, Hilary S.;
Leek, Jeffrey T.;
Favorov, Alexander V.;
Considine, Michael;
Xia, Xiaoxin;
Chavan, Sameer;
Chung, Christine H.;
Fertig, Elana J.

Publication type:

Article

The Scramble conversion tool.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2818, doi. 10.1093/bioinformatics/btu390

By:

Bonfield, James K.

Publication type:

Article

MetAssign: probabilistic annotation of metabolites from LC–MS data using a Bayesian clustering approach.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2764, doi. 10.1093/bioinformatics/btu370

By:

Daly, Rónán;
Rogers, Simon;
Wandy, Joe;
Jankevics, Andris;
Burgess, Karl E. V.;
Breitling, Rainer

Publication type:

Article

Network-guided regression for detecting associations between DNA methylation and gene expression.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2693, doi. 10.1093/bioinformatics/btu361

By:

Wang, Zi;
Curry, Edward;
Montana, Giovanni

Publication type:

Article

Correcting for link loss in causal network inference caused by regulator interference.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2779, doi. 10.1093/bioinformatics/btu388

By:

Wang, Ying;
Penfold, Christopher A.;
Hodgson, David A.;
Gifford, Miriam L.;
Burroughs, Nigel J.

Publication type:

Article

Cloud4Psi: cloud computing for 3D protein structure similarity searching.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2822, doi. 10.1093/bioinformatics/btu389

By:

Mrozek, Dariusz;
Małysiak-Mrozek, Bożena;
Kłapciński, Artur

Publication type:

Article

miR-PREFeR: an accurate, fast and easy-to-use plant miRNA prediction tool using small RNA-Seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2837, doi. 10.1093/bioinformatics/btu380

By:

Lei, Jikai;
Sun, Yanni

Publication type:

Article

BEETL-fastq: a searchable compressed archive for DNA reads.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2796, doi. 10.1093/bioinformatics/btu387

By:

Janin, Lilian;
Schulz-Trieglaff, Ole;
Cox, Anthony J.

Publication type:

Article

PGS: a tool for association study of high-dimensional microRNA expression data with repeated measures.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2802, doi. 10.1093/bioinformatics/btu396

By:

Zheng, Yinan;
Fei, Zhe;
Zhang, Wei;
Starren, Justin B.;
Liu, Lei;
Baccarelli, Andrea A.;
Li, Yi;
Hou, Lifang

Publication type:

Article

Evaluation and validation of de novo and hybrid assembly techniques to derive high-quality genome sequences.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2709, doi. 10.1093/bioinformatics/btu391

By:

Utturkar, Sagar M.;
Klingeman, Dawn M.;
Land, Miriam L.;
Schadt, Christopher W.;
Doktycz, Mitchel J.;
Pelletier, Dale A.;
Brown, Steven D.

Publication type:

Article

Predicting dynamic signaling network response under unseen perturbations.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2772, doi. 10.1093/bioinformatics/btu382

By:

Zhu, Fan;
Guan, Yuanfang

Publication type:

Article

Blue: correcting sequencing errors using consensus and context.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2723, doi. 10.1093/bioinformatics/btu368

By:

Greenfield, Paul;
Duesing, Konsta;
Papanicolaou, Alexie;
Bauer, Denis C.

Publication type:

Article

SensA: web-based sensitivity analysis of SBML models.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2830, doi. 10.1093/bioinformatics/btu378

By:

Floettmann, Max;
Uhlendorf, Jannis;
Scharp, Till;
Klipp, Edda;
Spiesser, Thomas W.

Publication type:

Article

MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2826, doi. 10.1093/bioinformatics/btu377

By:

Kim, Jihoon;
Levy, Eric;
Ferbrache, Alex;
Stepanowsky, Petra;
Farcas, Claudiu;
Wang, Shuang;
Brunner, Stefan;
Bath, Tyler;
Wu, Yuan;
Ohno-Machado, Lucila

Publication type:

Article

Detecting differential protein expression in large-scale population proteomics.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2741, doi. 10.1093/bioinformatics/btu341

By:

Ryu, So Young;
Qian, Wei-Jun;
Camp, David G.;
Smith, Richard D.;
Tompkins, Ronald G.;
Davis, Ronald W.;
Xiao, Wenzhong

Publication type:

Article

Literome: PubMed-scale genomic knowledge base in the cloud.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2840, doi. 10.1093/bioinformatics/btu383

By:

Poon, Hoifung;
Quirk, Chris;
DeZiel, Charlie;
Heckerman, David

Publication type:

Article

Omega: an Overlap-graph de novo Assembler for Metagenomics.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2717, doi. 10.1093/bioinformatics/btu395

By:

Haider, Bahlul;
Ahn, Tae-Hyuk;
Bushnell, Brian;
Chai, Juanjuan;
Copeland, Alex;
Pan, Chongle

Publication type:

Article

NetBioV: an R package for visualizing large network data in biology and medicine.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2834, doi. 10.1093/bioinformatics/btu384

By:

Tripathi, Shailesh;
Dehmer, Matthias;
Emmert-Streib, Frank

Publication type:

Article

DAFGA: diversity analysis of functional gene amplicons.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2820, doi. 10.1093/bioinformatics/btu394

By:

Kim, Yongkyu;
Liesack, Werner

Publication type:

Article

ABRA: improved coding indel detection via assembly-based realignment.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2813, doi. 10.1093/bioinformatics/btu376

By:

Mose, Lisle E.;
Wilkerson, Matthew D.;
Hayes, D. Neil;
Perou, Charles M.;
Parker, Joel S.

Publication type:

Article

Gene set analysis: limitations in popular existing methods and proposed improvements.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2747, doi. 10.1093/bioinformatics/btu374

By:

Mishra, Pashupati;
Törönen, Petri;
Leino, Yrjö;
Holm, Liisa

Publication type:

Article

SMaSH: a benchmarking toolkit for human genome variant calling.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2787, doi. 10.1093/bioinformatics/btu345

By:

Talwalkar, Ameet;
Liptrap, Jesse;
Newcomb, Julie;
Hartl, Christopher;
Terhorst, Jonathan;
Curtis, Kristal;
Bresler, Ma’ayan;
Song, Yun S.;
Jordan, Michael I.;
Patterson, David

Publication type:

Article

BioBlend.objects: metacomputing with Galaxy.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2816, doi. 10.1093/bioinformatics/btu386

By:

Leo, Simone;
Pireddu, Luca;
Cuccuru, Gianmauro;
Lianas, Luca;
Soranzo, Nicola;
Afgan, Enis;
Zanetti, Gianluigi

Publication type:

Article

Improving translation initiation site and stop codon recognition by using more than two classes.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2702, doi. 10.1093/bioinformatics/btu369

By:

Pérez-Rodríguez, Javier;
Arroyo-Peña, Alexis G.;
García-Pedrajas, Nicolás

Publication type:

Article

Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2733, doi. 10.1093/bioinformatics/btu194

By:

Messih, Mario Abdel;
Lepore, Rosalba;
Marcatili, Paolo;
Tramontano, Anna

Publication type:

Article

LICRE: unsupervised feature correlation reduction for lipidomics.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2832, doi. 10.1093/bioinformatics/btu381

By:

Wong, Gerard;
Chan, Jeffrey;
Kingwell, Bronwyn A.;
Leckie, Christopher;
Meikle, Peter J.

Publication type:

Article

circlize implements and enhances circular visualization in R.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2811, doi. 10.1093/bioinformatics/btu393

By:

Gu, Zuguang;
Gu, Lei;
Eils, Roland;
Schlesner, Matthias;
Brors, Benedikt

Publication type:

Article

RAREMETAL: fast and powerful meta-analysis for rare variants.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2828, doi. 10.1093/bioinformatics/btu367

By:

Feng, Shuang;
Liu, Dajiang;
Zhan, Xiaowei;
Wing, Mary Kate;
Abecasis, Gonçalo R.

Publication type:

Article

Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures.

Published in:

Bioinformatics, 2014, v. 30, n. 19, p. 2808, doi. 10.1093/bioinformatics/btu379

By:

Phanstiel, Douglas H.;
Boyle, Alan P.;
Araya, Carlos L.;
Snyder, Michael P.

Publication type:

Article