Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 18

Results: 30

MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2668, doi. 10.1093/bioinformatics/btu350

By:

Kundu, Kousik;
Mann, Martin;
Costa, Fabrizio;
Backofen, Rolf

Publication type:

Article

CAVER Analyst 1.0: graphic tool for interactive visualization and analysis of tunnels and channels in protein structures.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2684, doi. 10.1093/bioinformatics/btu364

By:

Kozlikova, Barbora;
Sebestova, Eva;
Sustr, Vilem;
Brezovsky, Jan;
Strnad, Ondrej;
Daniel, Lukas;
Bednar, David;
Pavelka, Antonin;
Manak, Martin;
Bezdeka, Martin;
Benes, Petr;
Kotry, Matus;
Gora, Artur;
Damborsky, Jiri;
Sochor, Jiri

Publication type:

Article

SSpro/ACCpro 5: almost perfect prediction of protein secondary structure and relative solvent accessibility using profiles, machine learning and structural similarity.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2592, doi. 10.1093/bioinformatics/btu352

By:

Magnan, Christophe N.;
Baldi, Pierre

Publication type:

Article

MPBind: a Meta-motif-based statistical framework and pipeline to Predict Binding potential of SELEX-derived aptamers.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2665, doi. 10.1093/bioinformatics/btu348

By:

Jiang, Peng;
Meyer, Susanne;
Hou, Zhonggang;
Propson, Nicholas E.;
Soh, H. Tom;
Thomson, James A.;
Stewart, Ron

Publication type:

Article

SparkSeq: fast, scalable and cloud-ready tool for the interactive genomic data analysis with nucleotide precision.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2652

By:

Wiewiórka, Marek S.;
Messina, Antonio;
Pacholewska, Alicja;
Maffioletti, Sergio;
Gawrysiak, Piotr;
Okoniewski, Michał J.

Publication type:

Article

Evol and ProDy for bridging protein sequence evolution and structural dynamics.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2681, doi. 10.1093/bioinformatics/btu336

By:

Bakan, Ahmet;
Dutta, Anindita;
Mao, Wenzhi;
Liu, Ying;
Chennubhotla, Chakra;
Lezon, Timothy R.;
Bahar, Ivet

Publication type:

Article

Tedna: a transposable element de novo assembler.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2656, doi. 10.1093/bioinformatics/btu365

By:

Zytnicki, Matthias;
Akhunov, Eduard;
Quesneville, Hadi

Publication type:

Article

CODOC: efficient access, analysis and compression of depth of coverage signals.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2676, doi. 10.1093/bioinformatics/btu362

By:

Popitsch, Niko

Publication type:

Article

PePr: a peak-calling prioritization pipeline to identify consistent or differential peaks from replicated ChIP-Seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2568, doi. 10.1093/bioinformatics/btu372

By:

Zhang, Yanxiao;
Lin, Yu-Hsuan;
Johnson, Timothy D.;
Rozek, Laura S.;
Sartor, Maureen A.

Publication type:

Article

FamLBL: detecting rare haplotype disease association based on common SNPs using case-parent triads.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2611, doi. 10.1093/bioinformatics/btu347

By:

Wang, Meng;
Lin, Shili

Publication type:

Article

PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2678, doi. 10.1093/bioinformatics/btu363

By:

Wang, Chen;
Evans, Jared M.;
Bhagwate, Aditya V.;
Prodduturi, Naresh;
Sarangi, Vivekananda;
Middha, Mridu;
Sicotte, Hugues;
Vedell, Peter T.;
Hart, Steven N.;
Oliver, Gavin R.;
Kocher, Jean-Pierre A.;
Maurer, Matthew J.;
Novak, Anne J.;
Slager, Susan L.;
Cerhan, James R.;
Asmann, Yan W.

Publication type:

Article

Memory-efficient RNA energy landscape exploration.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2584, doi. 10.1093/bioinformatics/btu337

By:

Mann, Martin;
Kucharík, Marcel;
Flamm, Christoph;
Wolfinger, Michael T.

Publication type:

Article

Estimates of allele-specific expression in Drosophila with a single genome sequence and RNA-seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2603, doi. 10.1093/bioinformatics/btu342

By:

Quinn, Andrew;
Juneja, Punita;
Jiggins, Francis M.

Publication type:

Article

CLImAT: accurate detection of copy number alteration and loss of heterozygosity in impure and aneuploid tumor samples using whole-genome sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2576, doi. 10.1093/bioinformatics/btu346

By:

Yu, Zhenhua;
Liu, Yuanning;
Shen, Yi;
Wang, Minghui;
Li, Ao

Publication type:

Article

GenomeVISTA—an integrated software package for whole-genome alignment and visualization.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2654, doi. 10.1093/bioinformatics/btu355

By:

Poliakov, Alexandre;
Foong, Justin;
Brudno, Michael;
Dubchak, Inna

Publication type:

Article

MaxLink: network-based prioritization of genes tightly linked to a disease seed set.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2689, doi. 10.1093/bioinformatics/btu344

By:

Guala, Dimitri;
Sjölund, Erik;
Sonnhammer, Erik L. L.

Publication type:

Article

HTML5 PivotViewer: high-throughput visualization and querying of image data on the web.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2691, doi. 10.1093/bioinformatics/btu349

By:

Taylor, Stephen;
Noble, Roger

Publication type:

Article

Next maSigPro: updating maSigPro bioconductor package for RNA-seq time series.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2598, doi. 10.1093/bioinformatics/btu333

By:

Nueda, María José;
Tarazona, Sonia;
Conesa, Ana

Publication type:

Article

MIPgen: optimized modeling and design of molecular inversion probes for targeted resequencing.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2670, doi. 10.1093/bioinformatics/btu353

By:

Boyle, Evan A.;
O’Roak, Brian J.;
Martin, Beth K.;
Kumar, Akash;
Shendure, Jay

Publication type:

Article

Reference-free prediction of rearrangement breakpoint reads.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2559, doi. 10.1093/bioinformatics/btu360

By:

Wijaya, Edward;
Shimizu, Kana;
Asai, Kiyoshi;
Hamada, Michiaki

Publication type:

Article

Accurate cell segmentation in microscopy images using membrane patterns.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2644, doi. 10.1093/bioinformatics/btu302

By:

Dimopoulos, Sotiris;
Mayer, Christian E.;
Rudolf, Fabian;
Stelling, Joerg

Publication type:

Article

EuGene-PP: a next-generation automated annotation pipeline for prokaryotic genomes.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2659, doi. 10.1093/bioinformatics/btu366

By:

Sallet, Erika;
Gouzy, Jérôme;
Schiex, Thomas

Publication type:

Article

Identification of chromosomal translocation hotspots via scan statistics.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2551, doi. 10.1093/bioinformatics/btu351

By:

Silva, Israel T.;
Rosales, Rafael A.;
Holanda, Adriano J.;
Nussenzweig, Michel C.;
Jankovic, Mila

Publication type:

Article

CWig: compressed representation of Wiggle/BedGraph format.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2543, doi. 10.1093/bioinformatics/btu330

By:

Huy Hoang, Do;
Sung, Wing-Kin

Publication type:

Article

Massifquant: open-source Kalman filter-based XC-MS isotope trace feature detection.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2636, doi. 10.1093/bioinformatics/btu359

By:

Conley, Christopher J.;
Smith, Rob;
Torgrip, Ralf J. O.;
Taylor, Ryan M.;
Tautenhahn, Ralf;
Prince, John T.

Publication type:

Article

GT-Scan: identifying unique genomic targets.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2673, doi. 10.1093/bioinformatics/btu354

By:

O’Brien, Aidan;
Bailey, Timothy L.

Publication type:

Article

keeSeek: searching distant non-existing words in genomes for PCR-based applications.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2662, doi. 10.1093/bioinformatics/btu312

By:

Falda, Marco;
Fontana, Paolo;
Barzon, Luisa;
Toppo, Stefano;
Lavezzo, Enrico

Publication type:

Article

Mirsynergy: detecting synergistic miRNA regulatory modules by overlapping neighbourhood expansion.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2627, doi. 10.1093/bioinformatics/btu373

By:

Li, Yue;
Liang, Cheng;
Wong, Ka-Chun;
Luo, Jiawei;
Zhang, Zhaolei

Publication type:

Article

DualAligner: a dual alignment-based strategy to align protein interaction networks.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2619, doi. 10.1093/bioinformatics/btu358

By:

Seah, Boon-Siew;
Bhowmick, Sourav S.;
Dewey, C. Forbes

Publication type:

Article

AlphaMPSim: flexible simulation of multi-parent crosses.

Published in:

Bioinformatics, 2014, v. 30, n. 18, p. 2686, doi. 10.1093/bioinformatics/btu206

By:

Hickey, John M.;
Gorjanc, Gregor;
Hearne, Sarah;
Huang, Bevan E.

Publication type:

Article