Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 17

Results: 75

ASTRAL: genome-scale coalescent-based species tree estimation.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i541, doi. 10.1093/bioinformatics/btu462

By:

Mirarab, S.;
Reaz, R.;
Bayzid, Md. S.;
Zimmermann, T.;
Swenson, M. S.;
Warnow, T.

Publication type:

Article

PyCorrFit—generic data evaluation for fluorescence correlation spectroscopy.

Published in:

2014

By:

Müller, Paul;
Schwille, Petra;
Weidemann, Thomas

Publication type:

Product Review

ECCB 2014 Organization.

Published in:: Bioinformatics, 2014, v. 30, n. 17, p. i341, doi. 10.1093/bioinformatics/btu511
Publication type:: Article

Extracting patterns of database and software usage from the bioinformatics literature.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i601, doi. 10.1093/bioinformatics/btu471

By:

Duck, Geraint;
Nenadic, Goran;
Brass, Andy;
Robertson, David L.;
Stevens, Robert

Publication type:

Article

Efficient RNA isoform identification and quantification from RNA-Seq data with network flows.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2447, doi. 10.1093/bioinformatics/btu317

By:

Bernard, Elsa;
Jacob, Laurent;
Mairal, Julien;
Vert, Jean-Philippe

Publication type:

Article

Ceiba: scalable visualization of phylogenies and 2D/3D image collections.

Published in:

2014

By:

Sanderson, Michael J.

Publication type:

Product Review

Microarray R-based analysis of complex lysate experiments with MIRACLE.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i631, doi. 10.1093/bioinformatics/btu473

By:

List, Markus;
Block, Ines;
Pedersen, Marlene Lemvig;
Christiansen, Helle;
Schmidt, Steffen;
Thomassen, Mads;
Tan, Qihua;
Baumbach, Jan;
Mollenhauer, Jan

Publication type:

Article

Polytomy refinement for the correction of dubious duplications in gene trees.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i519, doi. 10.1093/bioinformatics/btu463

By:

Lafond, Manuel;
Chauve, Cedric;
Dondi, Riccardo;
El-Mabrouk, Nadia

Publication type:

Article

RNASeqExpressionBrowser—a web interface to browse and visualize high-throughput expression data.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2519, doi. 10.1093/bioinformatics/btu334

By:

Nussbaumer, Thomas;
Kugler, Karl G.;
Bader, Kai C.;
Sharma, Sapna;
Seidel, Michael;
Mayer, Klaus F. X.

Publication type:

Article

Exploring protein domain organization by recognition of secondary structure packing interfaces.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2440, doi. 10.1093/bioinformatics/btu327

By:

Deng, Lizong;
Wu, Aiping;
Dai, Wentao;
Song, Tingrui;
Cui, Ya;
Jiang, Taijiao

Publication type:

Article

cnvOffSeq: detecting intergenic copy number variation using off-target exome sequencing data.

Published in:

2014

By:

Bellos, Evangelos;
Coin, Lachlan J. M.

Publication type:

Product Review

Bioclojure: a functional library for the manipulation of biological sequences.

Published in:

2014

By:

Plieskatt, Jordan;
Rinaldi, Gabriel;
Brindley, Paul J.;
Jia, Xinying;
Potriquet, Jeremy;
Bethony, Jeffrey;
Mulvenna, Jason

Publication type:

Product Review

Assessing the local structural quality of transmembrane protein models using statistical potentials (QMEANBrane).

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i505, doi. 10.1093/bioinformatics/btu457

By:

Studer, Gabriel;
Biasini, Marco;
Schwede, Torsten

Publication type:

Article

SIBIS: a Bayesian model for inconsistent protein sequence estimation.

Published in:

2014

By:

Khenoussi, Walyd;
Vanhoutrève, Renaud;
Poch, Olivier;
Thompson, Julie D.

Publication type:

Product Review

Probabilistic single-individual haplotyping.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i379, doi. 10.1093/bioinformatics/btu484

By:

Kuleshov, Volodymyr

Publication type:

Article

Inferring the paths of somatic evolution in cancer.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2456, doi. 10.1093/bioinformatics/btu319

By:

Misra, Navodit;
Szczurek, Ewa;
Vingron, Martin

Publication type:

Article

A framework for installable external tools in Skyline.

Published in:

2014

By:

Broudy, Daniel;
Killeen, Trevor;
Choi, Meena;
Shulman, Nicholas;
Mani, Deepak R.;
Abbatiello, Susan E.;
Mani, Deepak;
Ahmad, Rushdy;
Sahu, Alexandria K.;
Schilling, Birgit;
Tamura, Kaipo;
Boss, Yuval;
Sharma, Vagisha;
Gibson, Bradford W.;
Carr, Steven A.;
Vitek, Olga;
MacCoss, Michael J.;
MacLean, Brendan

Publication type:

Product Review

GEPdb: a database for investigating the ternary association of genotype, gene expression and phenotype.

Published in:

2014

By:

Ryu, Daeun;
Cho, SeongBeom;
Kim, Hun;
Lee, Sanghyuk;
Kim, Wankyu

Publication type:

Product Review

MSstats: an R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments.

Published in:

2014

By:

Choi, Meena;
Chang, Ching-Yun;
Clough, Timothy;
Broudy, Daniel;
Killeen, Trevor;
MacLean, Brendan;
Vitek, Olga

Publication type:

Product Review

Point estimates in phylogenetic reconstructions.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i534, doi. 10.1093/bioinformatics/btu461

By:

Benner, Philipp;
Bačák, Miroslav;
Bourguignon, Pierre-Yves

Publication type:

Article

FaSD-somatic: a fast and accurate somatic SNV detection algorithm for cancer genome sequencing data.

Published in:

2014

By:

Wang, Weixin;
Wang, Panwen;
Xu, Feng;
Luo, Ruibang;
Wong, Maria Pik;
Lam, Tak-Wah;
Wang, Junwen

Publication type:

Product Review

PconsFold: improved contact predictions improve protein models.

Published in:

2014

By:

Michel, Mirco;
Hayat, Sikander;
Skwark, Marcin J.;
Sander, Chris;
Marks, Debora S.;
Elofsson, Arne

Publication type:

Product Review

Alignment-free protein interaction network comparison.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i430, doi. 10.1093/bioinformatics/btu447

By:

Ali, Waqar;
Rito, Tiago;
Reinert, Gesine;
Sun, Fengzhu;
Deane, Charlotte M.

Publication type:

Article

Transcriptome-guided amyloid imaging genetic analysis via a novel structured sparse learning algorithm.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i564

By:

Yan, Jingwen;
Du, Lei;
Kim, Sungeun;
Risacher, Shannon L.;
Huang, Heng;
Moore, Jason H.;
Saykin, Andrew J.;
Shen, Li

Publication type:

Article

PeakLink: a new peptide peak linking method in LC-MS/MS using wavelet and SVM.

Published in:

2014

By:

Ghanat Bari, Mehrab;
Ma, Xuepo;
Zhang, Jianqiu

Publication type:

Case Study

Personalized identification of altered pathways in cancer using accumulated normal tissue data.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i422, doi. 10.1093/bioinformatics/btu449

By:

Ahn, TaeJin;
Lee, Eunjin;
Huh, Nam;
Park, Taesung

Publication type:

Article

GenCLiP 2.0: a web server for functional clustering of genes and construction of molecular networks based on free terms.

Published in:

2014

By:

Wang, Jia-Hong;
Zhao, Ling-Feng;
Lin, Pei;
Su, Xiao-Rong;
Chen, Shi-Jun;
Huang, Li-Qiang;
Wang, Hua-Feng;
Zhang, Hai;
Hu, Zhen-Fu;
Yao, Kai-Tai;
Huang, Zhong-Xi

Publication type:

Product Review

Large-scale automated identification of mouse brain cells in confocal light sheet microscopy images.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i587, doi. 10.1093/bioinformatics/btu469

By:

Frasconi, Paolo;
Silvestri, Ludovico;
Soda, Paolo;
Cortini, Roberto;
Pavone, Francesco S.;
Iannello, Giulio

Publication type:

Article

Exploration and retrieval of whole-metagenome sequencing samples.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2471, doi. 10.1093/bioinformatics/btu340

By:

Seth, Sohan;
Välimäki, Niko;
Kaski, Samuel;
Honkela, Antti

Publication type:

Article

Universal dynamical properties preclude standard clustering in a large class of biochemical data.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2486, doi. 10.1093/bioinformatics/btu332

By:

Gomez, Florian;
Stoop, Ralph L.;
Stoop, Ruedi

Publication type:

Article

Fast randomization of large genomic datasets while preserving alteration counts.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i617, doi. 10.1093/bioinformatics/btu474

By:

Gobbi, Andrea;
Iorio, Francesco;
Dawson, Kevin J.;
Wedge, David C.;
Tamborero, David;
Alexandrov, Ludmil B.;
Lopez-Bigas, Nuria;
Garnett, Mathew J.;
Jurman, Giuseppe;
Saez-Rodriguez, Julio

Publication type:

Article

Identifying transcription factor complexes and their roles.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i415, doi. 10.1093/bioinformatics/btu448

By:

Will, Thorsten;
Helms, Volkhard

Publication type:

Article

Lambda: the local aligner for massive biological data.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i349, doi. 10.1093/bioinformatics/btu439

By:

Hauswedell, Hannes;
Singer, Jochen;
Reinert, Knut

Publication type:

Article

FastHap: fast and accurate single individual haplotype reconstruction using fuzzy conflict graphs.

Published in:

2014

By:

Mazrouee, Sepideh;
Wang, Wei

Publication type:

Product Review

RidgeRace: ridge regression for continuous ancestral character estimation on phylogenetic trees.

Published in:

2014

By:

Kratsch, Christina;
McHardy, Alice C.

Publication type:

Product Review

RNASeqGUI: a GUI for analysing RNA-Seq data.

Published in:

2014

By:

Russo, Francesco;
Angelini, Claudia

Publication type:

Product Review

ContrastRank: a new method for ranking putative cancer driver genes and classification of tumor samples.

Published in:

2014

By:

Tian, Rui;
Basu, Malay K.;
Capriotti, Emidio

Publication type:

Product Review

HubAlign: an accurate and efficient method for global alignment of protein–protein interaction networks.

Published in:

2014

By:

Hashemifar, Somaye;
Xu, Jinbo

Publication type:

Product Review

Modeling DNA methylation dynamics with approaches from phylogenetics.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i408, doi. 10.1093/bioinformatics/btu445

By:

Capra, John A.;
Kostka, Dennis

Publication type:

Article

Experimental design schemes for learning Boolean network models.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i445, doi. 10.1093/bioinformatics/btu451

By:

Atias, Nir;
Gershenzon, Michal;
Labazin, Katia;
Sharan, Roded

Publication type:

Article

TEMPI: probabilistic modeling time-evolving differential PPI networks with multiPle information.

Published in:

2014

By:

Kim, Yongsoo;
Jang, Jin-Hyeok;
Choi, Seungjin;
Hwang, Daehee

Publication type:

Product Review

Bioinformatics-driven discovery of rational combination for overcoming EGFR-mutant lung cancer resistance to EGFR therapy.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2393, doi. 10.1093/bioinformatics/btu323

By:

Kim, Jihye;
Vasu, Vihas T.;
Mishra, Rangnath;
Singleton, Katherine R.;
Yoo, Minjae;
Leach, Sonia M.;
Farias-Hesson, Eveline;
Mason, Robert J.;
Kang, Jaewoo;
Ramamoorthy, Preveen;
Kern, Jeffrey A.;
Heasley, Lynn E.;
Finigan, James H.;
Tan, Aik Choon

Publication type:

Article

Effects of small particle numbers on long-term behaviour in discrete biochemical systems.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i475, doi. 10.1093/bioinformatics/btu453

By:

Kreyssig, Peter;
Wozar, Christian;
Peter, Stephan;
Veloz, Tomás;
Ibrahim, Bashar;
Dittrich, Peter

Publication type:

Article

aLFQ: an R-package for estimating absolute protein quantities from label-free LC-MS/MS proteomics data.

Published in:

2014

By:

Rosenberger, George;
Ludwig, Christina;
Röst, Hannes L.;
Aebersold, Ruedi;
Malmström, Lars

Publication type:

Product Review

Drug susceptibility prediction against a panel of drugs using kernelized Bayesian multitask learning.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i556, doi. 10.1093/bioinformatics/btu464

By:

Gönen, Mehmet;
Margolin, Adam A.

Publication type:

Article

SAMBLASTER: fast duplicate marking and structural variant read extraction.

Published in:

2014

By:

Faust, Gregory G.;
Hall, Ira M.

Publication type:

Product Review

unifiedWMWqPCR: the unified Wilcoxon–Mann–Whitney test for analyzing RT-qPCR data in R.

Published in:

2014

By:

De Neve, Jan;
Meys, Joris;
Ottoy, Jean–Pierre;
Clement, Lieven;
Thas, Olivier

Publication type:

Product Review

Two-dimensional segmentation for analyzing Hi-C data.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. i386, doi. 10.1093/bioinformatics/btu443

By:

Lévy-Leduc, Celine;
Delattre, M.;
Mary-Huard, T.;
Robin, S.

Publication type:

Article

fastGapFill: efficient gap filling in metabolic networks.

Published in:

Bioinformatics, 2014, v. 30, n. 17, p. 2529, doi. 10.1093/bioinformatics/btu321

By:

Thiele, Ines;
Vlassis, Nikos;
Fleming, Ronan M. T.

Publication type:

Article

CRISPRstrand: predicting repeat orientations to determine the crRNA-encoding strand at CRISPR loci.

Published in:

2014

By:

Alkhnbashi, Omer S.;
Costa, Fabrizio;
Shah, Shiraz A.;
Garrett, Roger A.;
Saunders, Sita J.;
Backofen, Rolf

Publication type:

Product Review