Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 15

Results: 31

A change-point model for identifying 3′UTR switching by next-generation RNA sequencing.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2162, doi. 10.1093/bioinformatics/btu189

By:

Wang, Wei;
Wei, Zhi;
Li, Hongzhe

Publication type:

Article

Computational identification of natural peptides based on analysis of molecular evolution.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2137, doi. 10.1093/bioinformatics/btu195

By:

Toporik, Amir;
Borukhov, Itamar;
Apatoff, Avihay;
Gerber, Doron;
Kliger, Yossef

Publication type:

Article

CABS-flex predictions of protein flexibility compared with NMR ensembles.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2150, doi. 10.1093/bioinformatics/btu184

By:

Jamroz, Michal;
Kolinski, Andrzej;
Kmiecik, Sebastian

Publication type:

Article

GOssTo: a stand-alone application and a web tool for calculating semantic similarities on the Gene Ontology.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2235, doi. 10.1093/bioinformatics/btu144

By:

Caniza, Horacio;
Romero, Alfonso E.;
Heron, Samuel;
Yang, Haixuan;
Devoto, Alessandra;
Frasca, Marco;
Mesiti, Marco;
Valentini, Giorgio;
Paccanaro, Alberto

Publication type:

Article

Association analysis using next-generation sequence data from publicly available control groups: the robust variance score statistic.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2179, doi. 10.1093/bioinformatics/btu196

By:

Derkach, Andriy;
Chiang, Theodore;
Gong, Jiafen;
Addis, Laura;
Dobbins, Sara;
Tomlinson, Ian;
Houlston, Richard;
Pal, Deb K.;
Strug, Lisa J.

Publication type:

Article

Lossy compression of quality scores in genomic data.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2130

By:

Cánovas, Rodrigo;
Moffat, Alistair;
Turpin, Andrew

Publication type:

Article

A comprehensive comparison of association estimators for gene network inference algorithms.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2142, doi. 10.1093/bioinformatics/btu182

By:

Kurt, Zeyneb;
Aydin, Nizamettin;
Altay, Gökmen

Publication type:

Article

DSRC 2—Industry-oriented compression of FASTQ files.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2213, doi. 10.1093/bioinformatics/btu208

By:

Roguski, Łukasz;
Deorowicz, Sebastian

Publication type:

Article

rTANDEM, an R/Bioconductor package for MS/MS protein identification.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2233, doi. 10.1093/bioinformatics/btu178

By:

Fournier, Frédéric;
Joly Beauparlant, Charles;
Paradis, René;
Droit, Arnaud

Publication type:

Article

Rgb: a scriptable genome browser for R.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2204, doi. 10.1093/bioinformatics/btu185

By:

Mareschal, Sylvain;
Dubois, Sydney;
Lecroq, Thierry;
Jardin, Fabrice

Publication type:

Article

methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2206, doi. 10.1093/bioinformatics/btu191

By:

Zhou, Xin;
Li, Daofeng;
Lowdon, Rebecca F.;
Costello, Joseph F.;
Wang, Ting

Publication type:

Article

PRADA: pipeline for RNA sequencing data analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2224, doi. 10.1093/bioinformatics/btu169

By:

Torres-García, Wandaliz;
Zheng, Siyuan;
Sivachenko, Andrey;
Vegesna, Rahulsimham;
Wang, Qianghu;
Yao, Rong;
Berger, Michael F.;
Weinstein, John N.;
Getz, Gad;
Verhaak, Roel G.W.

Publication type:

Article

SVAMP: sequence variation analysis, maps and phylogeny.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2227, doi. 10.1093/bioinformatics/btu176

By:

Naeem, Raeece;
Hidayah, Lailatul;
Preston, Mark D.;
Clark, Taane G.;
Pain, Arnab

Publication type:

Article

Covariate-modulated local false discovery rate for genome-wide association studies.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2098, doi. 10.1093/bioinformatics/btu145

By:

Zablocki, Rong W.;
Schork, Andrew J.;
Levine, Richard A.;
Andreassen, Ole A.;
Dale, Anders M.;
Thompson, Wesley K.

Publication type:

Article

HyperModules: identifying clinically and phenotypically significant network modules with disease mutations for biomarker discovery.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2230, doi. 10.1093/bioinformatics/btu172

By:

Leung, Alvin;
Bader, Gary D.;
Reimand, Jüri

Publication type:

Article

OncomiRDB: a database for the experimentally verified oncogenic and tumor-suppressive microRNAs.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2237, doi. 10.1093/bioinformatics/btu155

By:

Wang, Dongfang;
Gu, Jin;
Wang, Ting;
Ding, Zijian

Publication type:

Article

Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2197, doi. 10.1093/bioinformatics/btu193

By:

Pey, Jon;
Planes, Francisco J.

Publication type:

Article

Inferring rare disease risk variants based on exact probabilities of sharing by multiple affected relatives.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2189, doi. 10.1093/bioinformatics/btu198

By:

Bureau, Alexandre;
Younkin, Samuel G.;
Parker, Margaret M.;
Bailey-Wilson, Joan E.;
Marazita, Mary L.;
Murray, Jeffrey C.;
Mangold, Elisabeth;
Albacha-Hejazi, Hasan;
Beaty, Terri H.;
Ruczinski, Ingo

Publication type:

Article

ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2221, doi. 10.1093/bioinformatics/btu187

By:

Wallner, Björn

Publication type:

Article

geiger v2.0: an expanded suite of methods for fitting macroevolutionary models to phylogenetic trees.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2216, doi. 10.1093/bioinformatics/btu181

By:

Pennell, Matthew W.;
Eastman, Jonathan M.;
Slater, Graham J.;
Brown, Joseph W.;
Uyeda, Josef C.;
FitzJohn, Richard G.;
Alfaro, Michael E.;
Harmon, Luke J.

Publication type:

Article

Census 2: isobaric labeling data analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2208, doi. 10.1093/bioinformatics/btu151

By:

Park, Sung Kyu Robin;
Aslanian, Aaron;
McClatchy, Daniel B.;
Han, Xuemei;
Shah, Harshil;
Singh, Meha;
Rauniyar, Navin;
Moresco, James J.;
Pinto, Antonio F.M.;
Diedrich, Jolene K.;
Delahunty, Claire;
Yates, John R.

Publication type:

Article

Deconvolving tumor purity and ploidy by integrating copy number alterations and loss of heterozygosity.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2121, doi. 10.1093/bioinformatics/btu174

By:

Li, Yi;
Xie, Xiaohui

Publication type:

Article

Normalization of metabolomics data with applications to correlation maps.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2155, doi. 10.1093/bioinformatics/btu175

By:

Jauhiainen, Alexandra;
Madhu, Basetti;
Narita, Masako;
Narita, Masashi;
Griffiths, John;
Tavaré, Simon

Publication type:

Article

A fast and powerful tree-based association test for detecting complex joint effects in case–control studies.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2171, doi. 10.1093/bioinformatics/btu186

By:

Zhang, Han;
Wheeler, William;
Wang, Zhaoming;
Taylor, Philip R.;
Yu, Kai

Publication type:

Article

Filling annotation gaps in yeast genomes using genome-wide contact maps.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2105, doi. 10.1093/bioinformatics/btu162

By:

Marie-Nelly, Hervé;
Marbouty, Martial;
Cournac, Axel;
Liti, Gianni;
Fischer, Gilles;
Zimmer, Christophe;
Koszul, Romain

Publication type:

Article

Trimmomatic: a flexible trimmer for Illumina sequence data.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2114, doi. 10.1093/bioinformatics/btu170

By:

Bolger, Anthony M.;
Lohse, Marc;
Usadel, Bjoern

Publication type:

Article

Codon Optimization OnLine (COOL): a web-based multi-objective optimization platform for synthetic gene design.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2210, doi. 10.1093/bioinformatics/btu192

By:

Chin, Ju Xin;
Chung, Bevan Kai-Sheng;
Lee, Dong-Yup

Publication type:

Article

MetDisease—connecting metabolites to diseases via literature.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2239, doi. 10.1093/bioinformatics/btu179

By:

Duren, William;
Weymouth, Terry;
Hull, Tim;
Omenn, Gilbert S.;
Athey, Brian;
Burant, Charles;
Karnovsky, Alla

Publication type:

Article

Herpesviral helicase-primase subunit UL8 is inactivated B-family polymerase.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2093, doi. 10.1093/bioinformatics/btu204

By:

Kazlauskas, Darius;
Venclovas, Česlovas

Publication type:

Article

Robust identification of transcriptional regulatory networks using a Gibbs sampler on outlier sum statistic.

Published in:

2014

By:

Gu, Jinghua;
Xuan, Jianhua;
Riggins, Rebecca B.;
Chen, Li;
Wang, Yue;
Clarke, Robert

Publication type:

Correction Notice

relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data.

Published in:

Bioinformatics, 2014, v. 30, n. 15, p. 2219, doi. 10.1093/bioinformatics/btu166

By:

Morin, Sébastien;
Linnet, Troels E.;
Lescanne, Mathilde;
Schanda, Paul;
Thompson, Gary S.;
Tollinger, Martin;
Teilum, Kaare;
Gagné, Stéphane;
Marion, Dominique;
Griesinger, Christian;
Blackledge, Martin;
d’Auvergne, Edward J.

Publication type:

Article