Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 13

Results: 27

The Bio-Community Perl toolkit for microbial ecology.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1926, doi. 10.1093/bioinformatics/btu130

By:

Angly, Florent E.;
Fields, Christopher J.;
Tyson, Gene W.

Publication type:

Article

The Biological Reference Repository (BioR): a rapid and flexible system for genomics annotation.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1920, doi. 10.1093/bioinformatics/btu137

By:

Kocher, Jean-Pierre A.;
Quest, Daniel J.;
Duffy, Patrick;
Meiners, Michael A.;
Moore, Raymond M.;
Rider, David;
Hossain, Asif;
Hart, Steven N.;
Dinu, Valentin

Publication type:

Article

FSuite: exploiting inbreeding in dense SNP chip and exome data.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1940, doi. 10.1093/bioinformatics/btu149

By:

Gazal, Steven;
Sahbatou, Mourad;
Babron, Marie-Claude;
Génin, Emmanuelle;
Leutenegger, Anne-Louise

Publication type:

Article

Orione, a web-based framework for NGS analysis in microbiology.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1928, doi. 10.1093/bioinformatics/btu135

By:

Cuccuru, Gianmauro;
Orsini, Massimiliano;
Pinna, Andrea;
Sbardellati, Andrea;
Soranzo, Nicola;
Travaglione, Antonella;
Uva, Paolo;
Zanetti, Gianluigi;
Fotia, Giorgio

Publication type:

Article

PyRAD: assembly of de novo RADseq loci for phylogenetic analyses.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1844, doi. 10.1093/bioinformatics/btu121

By:

Eaton, Deren A. R.

Publication type:

Article

Wrangling Galaxy’s reference data.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1917, doi. 10.1093/bioinformatics/btu119

By:

Blankenberg, Daniel;
Johnson, James E.;
Taylor, James;
Nekrutenko, Anton

Publication type:

Article

Derivative processes for modelling metabolic fluxes.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1892

By:

Žurauskienė, Justina;
Kirk, Paul;
Thorne, Thomas;
Pinney, John;
Stumpf, Michael

Publication type:

Article

An R package to analyse LC/MS metabolomic data: MAIT (Metabolite Automatic Identification Toolkit).

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1937

By:

Fernández-Albert, Francesc;
Llorach, Rafael;
Andrés-Lacueva, Cristina;
Perera, Alexandre

Publication type:

Article

FISH: fast and accurate diploid genotype imputation via segmental hidden Markov model.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1876, doi. 10.1093/bioinformatics/btu143

By:

Zhang, Lei;
Pei, Yu-Fang;
Fu, Xiaoying;
Lin, Yong;
Wang, Yu-Ping;
Deng, Hong-Wen

Publication type:

Article

A personalized committee classification approach to improving prediction of breast cancer metastasis.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1858, doi. 10.1093/bioinformatics/btu128

By:

Jahid, Md Jamiul;
Huang, Tim H.;
Ruan, Jianhua

Publication type:

Article

Lacking alignments? The next-generation sequencing mapper segemehl revisited.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1837, doi. 10.1093/bioinformatics/btu146

By:

Otto, Christian;
Stadler, Peter F.;
Hoffmann, Steve

Publication type:

Article

Frag’r’Us: knowledge-based sampling of protein backbone conformations for de novo structure-based protein design.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1935, doi. 10.1093/bioinformatics/btu129

By:

Bonet, Jaume;
Segura, Joan;
Planas-Iglesias, Joan;
Oliva, Baldomero;
Fernandez-Fuentes, Narcis

Publication type:

Article

An adaptive workflow coupled with Random Forest algorithm to identify intact N-glycopeptides detected from mass spectrometry.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1908, doi. 10.1093/bioinformatics/btu139

By:

Liang, Suh-Yuen;
Wu, Sz-Wei;
Pu, Tsung-Hsien;
Chang, Fang-Yu;
Khoo, Kay-Hooi

Publication type:

Article

Challenges in RNA virus bioinformatics.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1793, doi. 10.1093/bioinformatics/btu105

By:

Marz, Manja;
Beerenwinkel, Niko;
Drosten, Christian;
Fricke, Markus;
Frishman, Dmitrij;
Hofacker, Ivo L.;
Hoffmann, Dieter;
Middendorf, Martin;
Rattei, Thomas;
Stadler, Peter F.;
Töpfer, Armin

Publication type:

Article

pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1930, doi. 10.1093/bioinformatics/btu138

By:

Vander Heiden, Jason A.;
Yaari, Gur;
Uduman, Mohamed;
Stern, Joel N.H.;
O’Connor, Kevin C.;
Hafler, David A.;
Vigneault, Francois;
Kleinstein, Steven H.

Publication type:

Article

Estimating optimal window size for analysis of low-coverage next-generation sequence data.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1823, doi. 10.1093/bioinformatics/btu123

By:

Gusnanto, Arief;
Taylor, Charles C.;
Nafisah, Ibrahim;
Wood, Henry M.;
Rabbitts, Pamela;
Berri, Stefano

Publication type:

Article

Accurate computational prediction of the transcribed strand of CRISPR non-coding RNAs.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1805, doi. 10.1093/bioinformatics/btu114

By:

Biswas, Ambarish;
Fineran, Peter C.;
Brown, Chris M.

Publication type:

Article

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming.

Published in:

2014

By:

Guziolowski, Carito;
Videla, Santiago;
Eduati, Federica;
Thiele, Sven;
Cokelaer, Thomas;
Siegel, Anne;
Saez-Rodriguez, Julio

Publication type:

Correction Notice

Characterization of p38 MAPK isoforms for drug resistance study using systems biology approach.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1899, doi. 10.1093/bioinformatics/btu133

By:

Peng, Huiming;
Peng, Tao;
Wen, Jianguo;
Engler, David A.;
Matsunami, Risë K.;
Su, Jing;
Zhang, Le;
Chang, Chung-Che (Jeff);
Zhou, Xiaobo

Publication type:

Article

A gradient-boosting approach for filtering de novo mutations in parent–offspring trios.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1830, doi. 10.1093/bioinformatics/btu141

By:

Liu, Yongzhuang;
Li, Bingshan;
Tan, Renjie;
Zhu, Xiaolin;
Wang, Yadong

Publication type:

Article

LASAGNA-Search 2.0: integrated transcription factor binding site search and visualization in a browser.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1923, doi. 10.1093/bioinformatics/btu115

By:

Lee, Chih;
Huang, Chun-Hsi

Publication type:

Article

Tospovirus ambisense genomic RNA segments use almost complete repertoire of stable tetraloops in the intergenic region.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1800, doi. 10.1093/bioinformatics/btu122

By:

Clabbers, Max T. B.;
Olsthoorn, Rene C. L.;
Gultyaev, Alexander P.

Publication type:

Article

Probabilistic PCA of censored data: accounting for uncertainties in the visualization of high-throughput single-cell qPCR data.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1867, doi. 10.1093/bioinformatics/btu134

By:

Buettner, Florian;
Moignard, Victoria;
Göttgens, Berthold;
Theis, Fabian J.

Publication type:

Article

Genome-wide quantitative analysis of DNA methylation from bisulfite sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1933, doi. 10.1093/bioinformatics/btu142

By:

Akman, Kemal;
Haaf, Thomas;
Gravina, Silvia;
Vijg, Jan;
Tresch, Achim

Publication type:

Article

Induction of T-cell memory by a dendritic cell vaccine: a computational model.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1884, doi. 10.1093/bioinformatics/btu059

By:

Pappalardo, Francesco;
Pennisi, Marzio;
Ricupito, Alessia;
Topputo, Francesco;
Bellone, Matteo

Publication type:

Article

Protein fold recognition using geometric kernel data fusion.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1850, doi. 10.1093/bioinformatics/btu118

By:

Zakeri, Pooya;
Jeuris, Ben;
Vandebril, Raf;
Moreau, Yves

Publication type:

Article

DMAP: differential methylation analysis package for RRBS and WGBS data.

Published in:

Bioinformatics, 2014, v. 30, n. 13, p. 1814, doi. 10.1093/bioinformatics/btu126

By:

Stockwell, Peter A.;
Chatterjee, Aniruddha;
Rodger, Euan J.;
Morison, Ian M.

Publication type:

Article