Works matching IS 13674803 AND DT 2014 AND VI 30 AND IP 12

Results: 70

Metabolite identification through multiple kernel learning on fragmentation trees.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i157, doi. 10.1093/bioinformatics/btu275

By:

Shen, Huibin;
Dührkop, Kai;
Böcker, Sebastian;
Rousu, Juho

Publication type:

Article

EPIQ—efficient detection of SNP–SNP epistatic interactions for quantitative traits.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i19, doi. 10.1093/bioinformatics/btu261

By:

Arkin, Ya’ara;
Rahmani, Elior;
Kleber, Marcus E.;
Laaksonen, Reijo;
März, Winfried;
Halperin, Eran

Publication type:

Article

AUTHOR INDEX.

Published in:: Bioinformatics, 2014, v. 30, n. 12, p. i338, doi. 10.1093/bioinformatics/btu371
Publication type:: Article

TSSV: a tool for characterization of complex allelic variants in pure and mixed genomes.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1651, doi. 10.1093/bioinformatics/btu068

By:

Anvar, Seyed Yahya;
van der Gaag, Kristiaan J.;
van der Heijden, Jaap W. F.;
Veltrop, Marcel H. A. M.;
Vossen, Rolf H. A. M.;
de Leeuw, Rick H.;
Breukel, Cor;
Buermans, Henk P. J.;
Verbeek, J. Sjef;
de Knijff, Peter;
den Dunnen, Johan T.;
Laros, Jeroen F. J.

Publication type:

Article

Ragout—a reference-assisted assembly tool for bacterial genomes.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i302, doi. 10.1093/bioinformatics/btu280

By:

Kolmogorov, Mikhail;
Raney, Brian;
Paten, Benedict;
Pham, Son

Publication type:

Article

An efficient parallel algorithm for accelerating computational protein design.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i255, doi. 10.1093/bioinformatics/btu264

By:

Zhou, Yichao;
Xu, Wei;
Donald, Bruce R.;
Zeng, Jianyang

Publication type:

Article

New directions for diffusion-based network prediction of protein function: incorporating pathways with confidence.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i219, doi. 10.1093/bioinformatics/btu263

By:

Cao, Mengfei;
Pietras, Christopher M.;
Feng, Xian;
Doroschak, Kathryn J.;
Schaffner, Thomas;
Park, Jisoo;
Zhang, Hao;
Cowen, Lenore J.;
Hescott, Benjamin J.

Publication type:

Article

BlockClust: efficient clustering and classification of non-coding RNAs from short read RNA-seq profiles.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i274, doi. 10.1093/bioinformatics/btu270

By:

Videm, Pavankumar;
Rose, Dominic;
Costa, Fabrizio;
Backofen, Rolf

Publication type:

Article

Improved protein–ligand binding affinity prediction by using a curvature-dependent surface-area model.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1674, doi. 10.1093/bioinformatics/btu104

By:

Cao, Yang;
Li, Lei

Publication type:

Article

jHeatmap: an interactive heatmap viewer for the web.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1757, doi. 10.1093/bioinformatics/btu094

By:

Deu-Pons, Jordi;
Schroeder, Michael P.;
Lopez-Bigas, Nuria

Publication type:

Article

Editorial.

Published in:

2014

By:

Batzoglou, Serafim;
Schwartz, Russell

Publication type:

Proceeding

EXTREME: an online EM algorithm for motif discovery.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1667, doi. 10.1093/bioinformatics/btu093

By:

Quang, Daniel;
Xie, Xiaohui

Publication type:

Article

Detecting independent and recurrent copy number aberrations using interval graphs.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i195, doi. 10.1093/bioinformatics/btu276

By:

Wu, Hsin-Ta;
Hajirasouliha, Iman;
Raphael, Benjamin J.

Publication type:

Article

fast_protein_cluster: parallel and optimized clustering of large-scale protein modeling data.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1774, doi. 10.1093/bioinformatics/btu098

By:

Hung, Ling-Hong;
Samudrala, Ram

Publication type:

Article

ADaCGH2: parallelized analysis of (big) CNA data.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1759, doi. 10.1093/bioinformatics/btu099

By:

Diaz-Uriarte, Ramon

Publication type:

Article

Discrete mixture modeling to address genetic heterogeneity in time-to-event regression.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1690, doi. 10.1093/bioinformatics/btu065

By:

Eng, Kevin H.;
Hanlon, Bret M.

Publication type:

Article

BicOverlapper 2.0: visual analysis for gene expression.

Published in:

2014

By:

Santamaría, Rodrigo;
Therón, Roberto;
Quintales, Luis

Publication type:

Product Review

Privacy preserving protocol for detecting genetic relatives using rare variants.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i204, doi. 10.1093/bioinformatics/btu294

By:

Hormozdiari, Farhad;
Joo, Jong Wha J;
Wadia, Akshay;
Guan, Feng;
Ostrosky, Rafail;
Sahai, Amit;
Eskin, Eleazar

Publication type:

Article

SBARS: fast creation of dotplots for DNA sequences on different scales using GA-,GC-content.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1765, doi. 10.1093/bioinformatics/btu095

By:

Pyatkov, Maxim I.;
Pankratov, Anton N.

Publication type:

Article

Incorporating post-translational modifications and unnatural amino acids into high-throughput modeling of protein structures.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1681, doi. 10.1093/bioinformatics/btu106

By:

Nagata, Ken;
Randall, Arlo;
Baldi, Pierre

Publication type:

Article

Stochastic EM-based TFBS motif discovery with MITSU.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i310, doi. 10.1093/bioinformatics/btu286

By:

Kilpatrick, Alastair M.;
Ward, Bruce;
Aitken, Stuart

Publication type:

Article

SKINK: a web server for string kernel based kink prediction in α-helices.

Published in:

2014

By:

Seifert, Tim;
Lund, Andreas;
Kneissl, Benny;
Mueller, Sabine C.;
Tautermann, Christofer S.;
Hildebrandt, Andreas

Publication type:

Product Review

CanSNPer: a hierarchical genotype classifier of clonal pathogens.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1762, doi. 10.1093/bioinformatics/btu113

By:

Lärkeryd, Adrian;
Myrtennäs, Kerstin;
Karlsson, Edvin;
Dwibedi, Chinmay Kumar;
Forsman, Mats;
Larsson, Pär;
Johansson, Anders;
Sjödin, Andreas

Publication type:

Article

Inductive matrix completion for predicting gene–disease associations.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i60, doi. 10.1093/bioinformatics/btu269

By:

Natarajan, Nagarajan;
Dhillon, Inderjit S.

Publication type:

Article

Tertiary structure-based prediction of conformational B-cell epitopes through B factors.

Published in:

2014

By:

Ren, Jing;
Liu, Qian;
Ellis, John;
Li, Jinyan

Publication type:

Case Study

Inferring gene ontologies from pairwise similarity data.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i34, doi. 10.1093/bioinformatics/btu282

By:

Kramer, Michael;
Dutkowski, Janusz;
Yu, Michael;
Bafna, Vineet;
Ideker, Trey

Publication type:

Article

ZDOCK server: interactive docking prediction of protein–protein complexes and symmetric multimers.

Published in:

2014

By:

Pierce, Brian G.;
Wiehe, Kevin;
Hwang, Howook;
Kim, Bong-Hyun;
Vreven, Thom;
Weng, Zhiping

Publication type:

Product Review

Probabilistic method for detecting copy number variation in a fetal genome using maternal plasma sequencing.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i212

By:

Rampášek, Ladislav;
Arbabi, Aryan;
Brudno, Michael

Publication type:

Article

Deciphering kinase–substrate relationships by analysis of domain-specific phosphorylation network.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1730, doi. 10.1093/bioinformatics/btu112

By:

Damle, Nikhil Prakash;
Mohanty, Debasisa

Publication type:

Article

RNA-Skim: a rapid method for RNA-Seq quantification at transcript level.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i283, doi. 10.1093/bioinformatics/btu288

By:

Zhang, Zhaojun;
Wang, Wei

Publication type:

Article

ISMB 2014 Proceedings Papers Committee.

Published in:: Bioinformatics, 2014, v. 30, n. 12, p. i3, doi. 10.1093/bioinformatics/btu322
Publication type:: Article

Mantra 2.0: an online collaborative resource for drug mode of action and repurposing by network analysis.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1787, doi. 10.1093/bioinformatics/btu058

By:

Carrella, Diego;
Napolitano, Francesco;
Rispoli, Rossella;
Miglietta, Mario;
Carissimo, Annamaria;
Cutillo, Luisa;
Sirci, Francesco;
Gregoretti, Francesco;
Di Bernardo, Diego

Publication type:

Article

Pareto-optimal phylogenetic tree reconciliation.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i87, doi. 10.1093/bioinformatics/btu289

By:

Libeskind-Hadas, Ran;
Wu, Yi-Chieh;
Bansal, Mukul S.;
Kellis, Manolis

Publication type:

Article

GUILDify: a web server for phenotypic characterization of genes through biological data integration and network-based prioritization algorithms.

Published in:

2014

By:

Guney, Emre;
Garcia-Garcia, Javier;
Oliva, Baldo

Publication type:

Product Review

Graph-regularized dual Lasso for robust eQTL mapping.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i139, doi. 10.1093/bioinformatics/btu293

By:

Cheng, Wei;
Zhang, Xiang;
Guo, Zhishan;
Shi, Yu;
Wang, Wei

Publication type:

Article

ExSPAnder: a universal repeat resolver for DNA fragment assembly.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i293, doi. 10.1093/bioinformatics/btu266

By:

Prjibelski, Andrey D.;
Vasilinetc, Irina;
Bankevich, Anton;
Gurevich, Alexey;
Krivosheeva, Tatiana;
Nurk, Sergey;
Pham, Son;
Korobeynikov, Anton;
Lapidus, Alla;
Pevzner, Pavel A.

Publication type:

Article

DrugComboRanker: drug combination discovery based on target network analysis.

Published in:

2014

By:

Huang, Lei;
Li, Fuhai;
Sheng, Jianting;
Xia, Xiaofeng;
Ma, Jinwen;
Zhan, Ming;
Wong, Stephen T.C.

Publication type:

Case Study

Dynamic networks reveal key players in aging.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1721, doi. 10.1093/bioinformatics/btu089

By:

Faisal, Fazle E.;
Milenković, Tijana

Publication type:

Article

A combinatorial approach for analyzing intra-tumor heterogeneity from high-throughput sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i78, doi. 10.1093/bioinformatics/btu284

By:

Hajirasouliha, Iman;
Mahmoody, Ahmad;
Raphael, Benjamin J.

Publication type:

Article

Accurate viral population assembly from ultra-deep sequencing data.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i329, doi. 10.1093/bioinformatics/btu295

By:

Mangul, Serghei;
Wu, Nicholas C.;
Mancuso, Nicholas;
Zelikovsky, Alex;
Sun, Ren;
Eskin, Eleazar

Publication type:

Article

MGDB: crossing the marker genes of a user microarray with a database of public-microarrays marker genes.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1780, doi. 10.1093/bioinformatics/btu109

By:

Huerta, Mario;
Munyi, Marc;
Expósito, David;
Querol, Enric;
Cedano, Juan

Publication type:

Article

Automated detection and tracking of many cells by using 4D live-cell imaging data.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i43, doi. 10.1093/bioinformatics/btu271

By:

Tokunaga, Terumasa;
Hirose, Osamu;
Kawaguchi, Shotaro;
Toyoshima, Yu;
Teramoto, Takayuki;
Ikebata, Hisaki;
Kuge, Sayuri;
Ishihara, Takeshi;
Iino, Yuichi;
Yoshida, Ryo

Publication type:

Article

Optimization of gene set annotations via entropy minimization over variable clusters (EMVC).

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1698, doi. 10.1093/bioinformatics/btu110

By:

Frost, H. Robert;
Moore, Jason H.

Publication type:

Article

AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references.

Published in:

2014

By:

Bao, Ergude;
Jiang, Tao;
Girke, Thomas

Publication type:

Product Review

Functional association networks as priors for gene regulatory network inference.

Published in:

2014

By:

Studham, Matthew E.;
Tjärnberg, Andreas;
Nordling, Torbjörn E.M.;
Nelander, Sven;
Sonnhammer, Erik L. L.

Publication type:

Product Review

MRHMMs: Multivariate Regression Hidden Markov Models and the variantS.

Published in:

2014

By:

Lee, Yeonok;
Ghosh, Debashis;
Hardison, Ross C.;
Zhang, Yu

Publication type:

Product Review

Canto: an online tool for community literature curation.

Published in:

2014

By:

Rutherford, Kim M.;
Harris, Midori A.;
Lock, Antonia;
Oliver, Stephen G.;
Wood, Valerie

Publication type:

Product Review

Scale-space measures for graph topology link protein network architecture to function.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i237, doi. 10.1093/bioinformatics/btu283

By:

Hulsman, Marc;
Dimitrakopoulos, Christos;
de Ridder, Jeroen

Publication type:

Article

SOAPdenovo-Trans: de novo transcriptome assembly with short RNA-Seq reads.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. 1660, doi. 10.1093/bioinformatics/btu077

By:

Xie, Yinlong;
Wu, Gengxiong;
Tang, Jingbo;
Luo, Ruibang;
Patterson, Jordan;
Liu, Shanlin;
Huang, Weihua;
He, Guangzhu;
Gu, Shengchang;
Li, Shengkang;
Zhou, Xin;
Lam, Tak-Wah;
Li, Yingrui;
Xu, Xun;
Wong, Gane Ka-Shu;
Wang, Jun

Publication type:

Article

Using association rule mining to determine promising secondary phenotyping hypotheses.

Published in:

Bioinformatics, 2014, v. 30, n. 12, p. i52

By:

Oellrich, Anika;
Jacobsen, Julius;
Papatheodorou, Irene;
Smedley, Damian

Publication type:

Article