Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 9

Results: 28

Density-based hierarchical clustering of pyro-sequences on a large scale-the case of fungal ITS1.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1268, doi. 10.1093/bioinformatics/btt149

By:

Pagni, Marco;
Niculita-Hirzel, Hélène;
Pellissier, Loïc;
Dubuis, Anne;
Xenarios, Ioannis;
Guisan, Antoine;
Sanders, Ian R.;
Goudet, Jérôme;
Guex, Nicolas

Publication type:

Article

JAWAMix5: an out-of-core HDF5-based java implementation of whole-genome association studies using mixed models.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1220, doi. 10.1093/bioinformatics/btt122

By:

Long, Quan;
Zhang, Qingrun;
Vilhjalmsson, Bjarni J.;
Forai, Petar;
Seren, Ümit;
Nordborg, Magnus

Publication type:

Article

pfsearchV3: a code acceleration and heuristic to search PROSITE profiles.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1215, doi. 10.1093/bioinformatics/btt129

By:

Schuepbach, Thierry;
Pagni, Marco;
Bridge, Alan;
Bougueleret, Lydie;
Xenarios, Ioannis;
Cerutti, Lorenzo

Publication type:

Article

Using tertiary structure for the computation of highly accurate multiple RNA alignments with the SARA-Coffee package.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1112, doi. 10.1093/bioinformatics/btt096

By:

Kemena, Carsten;
Bussotti, Giovanni;
Capriotti, Emidio;
Marti-Renom, Marc A.;
Notredame, Cedric

Publication type:

Article

FunFrame: functional gene ecological analysis pipeline.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1212, doi. 10.1093/bioinformatics/btt123

By:

Weisman, David;
Yasuda, Michie;
Bowen, Jennifer L.

Publication type:

Article

A temporal switch model for estimating transcriptional activity in gene expression.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1158, doi. 10.1093/bioinformatics/btt111

By:

Jenkins, Dafyd J.;
Finkenstädt, Bärbel;
Rand, David A.

Publication type:

Article

Enabling interspecies epigenomic comparison with CEpBrowser.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1223, doi. 10.1093/bioinformatics/btt114

By:

Cao, Xiaoyi;
Zhong, Sheng

Publication type:

Article

RCPedia: a database of retrocopied genes.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1235, doi. 10.1093/bioinformatics/btt104

By:

Navarro, Fábio C. P.;
Galante, Pedro A. F.

Publication type:

Article

PeptideLocator: prediction of bioactive peptides in protein sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1120, doi. 10.1093/bioinformatics/btt103

By:

Mooney, Catherine;
Haslam, Niall J.;
Holton, Thérèse A.;
Pollastri, Gianluca;
Shields, Denis C.

Publication type:

Article

Predicting the probability of H3K4me3 occupation at a base pair from the genome sequence context.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1199

By:

Ha, Misook;
Hong, Soondo;
Li, Wen-Hsiung

Publication type:

Article

A rate-distortion theory for gene regulatory networks and its application to logic gate consistency.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1166, doi. 10.1093/bioinformatics/btt116

By:

Facchetti, Giuseppe;
Iacono, Giovanni;
De Palo, Giovanna;
Altafini, Claudio

Publication type:

Article

ChIP-PED enhances the analysis of ChIP-seq and ChIP-chip data.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1182, doi. 10.1093/bioinformatics/btt108

By:

Wu, George;
Yustein, Jason T.;
McCall, Matthew N.;
Zilliox, Michael;
Irizarry, Rafael A.;
Zeller, Karen;
Dang, Chi V.;
Ji, Hongkai

Publication type:

Article

Peakr: simulating solid-state NMR spectra of proteins.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1134, doi. 10.1093/bioinformatics/btt125

By:

Schneider, Robert;
Odronitz, Florian;
Hammesfahr, Björn;
Hellkamp, Marcel;
Kollmar, Martin

Publication type:

Article

HExpoChem: a systems biology resource to explore human exposure to chemicals.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1231, doi. 10.1093/bioinformatics/btt112

By:

Taboureau, Olivier;
Jacobsen, Ulrik Plesner;
Kalhauge, Christian;
Edsgärd, Daniel;
Rigina, Olga;
Gupta, Ramneek;
Audouze, Karine

Publication type:

Article

MitoSeek: extracting mitochondria information and performing high-throughput mitochondria sequencing analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1210, doi. 10.1093/bioinformatics/btt118

By:

Guo, Yan;
Li, Jiang;
Li, Chung-I;
Shyr, Yu;
Samuels, David C.

Publication type:

Article

NTFD—a stand-alone application for the non-targeted detection of stable isotope-labeled compounds in GC/MS data.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1226, doi. 10.1093/bioinformatics/btt119

By:

Hiller, Karsten;
Wegner, André;
Weindl, Daniel;
Cordes, Thekla;
Metallo, Christian M.;
Kelleher, Joanne K.;
Stephanopoulos, Gregory

Publication type:

Article

CytoHiC: a cytoscape plugin for visual comparison of Hi-C networks.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1206, doi. 10.1093/bioinformatics/btt120

By:

Shavit, Yoli;
Lio', Pietro

Publication type:

Article

FTFlex: accounting for binding site flexibility to improve fragment-based identification of druggable hot spots.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1218, doi. 10.1093/bioinformatics/btt102

By:

Grove, Laurie E.;
Hall, David R.;
Beglov, Dmitri;
Vajda, Sandor;
Kozakov, Dima

Publication type:

Article

Modeling risk stratification in human cancer.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1149, doi. 10.1093/bioinformatics/btt124

By:

Rème, Thierry;
Hose, Dirk;
Theillet, Charles;
Klein, Bernard

Publication type:

Article

The Simmune Modeler visual interface for creating signaling networks based on bi-molecular interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1229, doi. 10.1093/bioinformatics/btt134

By:

Zhang, Fengkai;
Angermann, Bastian R.;
Meier-Schellersheim, Martin

Publication type:

Article

SplicingCompass: differential splicing detection using RNA-Seq data.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1141, doi. 10.1093/bioinformatics/btt101

By:

Aschoff, Moritz;
Hotz-Wagenblatt, Agnes;
Glatting, Karl-Heinz;
Fischer, Matthias;
Eils, Roland;
König, Rainer

Publication type:

Article

Galaxy LIMS for next-generation sequencing.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1233, doi. 10.1093/bioinformatics/btt115

By:

Scholtalbers, Jelle;
Rößler, Jasmin;
Sorn, Patrick;
de Graaf, Jos;
Boisguérin, Valesca;
Castle, John;
Sahin, Ugur

Publication type:

Article

Brain: biomedical knowledge manipulation.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1238, doi. 10.1093/bioinformatics/btt109

By:

Croset, Samuel;
Overington, John P.;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Poisson factor models with applications to non-normalized microRNA profiling.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1105, doi. 10.1093/bioinformatics/btt091

By:

Lee, Seonjoo;
Chugh, Pauline E.;
Shen, Haipeng;
Eberle, R.;
Dittmer, Dirk P.

Publication type:

Article

freeIbis: an efficient basecaller with calibrated quality scores for Illumina sequencers.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1208, doi. 10.1093/bioinformatics/btt117

By:

Renaud, Gabriel;
Kircher, Martin;
Stenzel, Udo;
Kelso, Janet

Publication type:

Article

Specificity and affinity quantification of protein–protein interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1127, doi. 10.1093/bioinformatics/btt121

By:

Yan, Zhiqiang;
Guo, Liyong;
Hu, Liang;
Wang, Jin

Publication type:

Article

Identification of cancer fusion drivers using network fusion centrality.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1174, doi. 10.1093/bioinformatics/btt131

By:

Wu, Chia-Chin;
Kannan, Kalpana;
Lin, Steven;
Yen, Laising;
Milosavljevic, Aleksandar

Publication type:

Article

Parametric Bayesian priors and better choice of negative examples improve protein function prediction.

Published in:

Bioinformatics, 2013, v. 29, n. 9, p. 1190, doi. 10.1093/bioinformatics/btt110

By:

Youngs, Noah;
Penfold-Brown, Duncan;
Drew, Kevin;
Shasha, Dennis;
Bonneau, Richard

Publication type:

Article