Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 8

Results: 26

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1035, doi. 10.1093/bioinformatics/btt087

By:

Leng, Ning;
Dawson, John A.;
Thomson, James A.;
Ruotti, Victor;
Rissman, Anna I.;
Smits, Bart M. G.;
Haag, Jill D.;
Gould, Michael N.;
Stewart, Ron M.;
Kendziorski, Christina

Publication type:

Article

PLncDB: plant long non-coding RNA database.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1068, doi. 10.1093/bioinformatics/btt107

By:

Jin, Jingjing;
Liu, Jun;
Wang, Huan;
Wong, Limsoon;
Chua, Nam-Hai

Publication type:

Article

Making automated multiple alignments of very large numbers of protein sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 989, doi. 10.1093/bioinformatics/btt093

By:

Sievers, Fabian;
Dineen, David;
Wilm, Andreas;
Higgins, Desmond G.

Publication type:

Article

GalaxyGemini: a web server for protein homo-oligomer structure prediction based on similarity.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1078, doi. 10.1093/bioinformatics/btt079

By:

Lee, Hasup;
Park, Hahnbeom;
Ko, Junsu;
Seok, Chaok

Publication type:

Article

BioJS: an open source JavaScript framework for biological data visualization.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1103, doi. 10.1093/bioinformatics/btt100

By:

Gómez, John;
García, Leyla J.;
Salazar, Gustavo A.;
Villaveces, Jose;
Gore, Swanand;
García, Alexander;
Martín, Maria J.;
Launay, Guillaume;
Alcántara, Rafael;
del-Toro, Noemi;
Dumousseau, Marine;
Orchard, Sandra;
Velankar, Sameer;
Hermjakob, Henning;
Zong, Chenggong;
Ping, Peipei;
Corpas, Manuel;
Jiménez, Rafael C.

Publication type:

Article

IRootLab: a free and open-source MATLAB toolbox for vibrational biospectroscopy data analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1095, doi. 10.1093/bioinformatics/btt084

By:

Trevisan, Júlio;
Angelov, Plamen P.;
Scott, Andrew D.;
Carmichael, Paul L.;
Martin, Francis L.

Publication type:

Article

An improved constraint filtering technique for inferring hidden states and parameters of a biological model.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1052, doi. 10.1093/bioinformatics/btt097

By:

Murtuza Baker, Syed;
Poskar, C. Hart;
Schreiber, Falk;
Junker, Björn H.

Publication type:

Article

PLRS: a flexible tool for the joint analysis of DNA copy number and mRNA expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1081, doi. 10.1093/bioinformatics/btt082

By:

Leday, Gwenaël G.R.;
van de Wiel, Mark A.

Publication type:

Article

Nozzle: a report generation toolkit for data analysis pipelines.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1089, doi. 10.1093/bioinformatics/btt085

By:

Gehlenborg, Nils;
Noble, Michael S.;
Getz, Gad;
Chin, Lynda;
Park, Peter J.

Publication type:

Article

PleioGRiP: genetic risk prediction with pleiotropy.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1086, doi. 10.1093/bioinformatics/btt081

By:

Hartley, Stephen W.;
Sebastiani, Paola

Publication type:

Article

Prediction of contact matrix for protein–protein interaction.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1018

By:

González, Alvaro J.;
Liao, Li;
Wu, Cathy H.

Publication type:

Article

Genetic Simulation Resources: a website for the registration and discovery of genetic data simulators.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1101, doi. 10.1093/bioinformatics/btt094

By:

Peng, Bo;
Chen, Huann-Sheng;
Mechanic, Leah E.;
Racine, Ben;
Clarke, John;
Clarke, Lauren;
Gillanders, Elizabeth;
Feuer, Eric J.

Publication type:

Article

Wessim: a whole-exome sequencing simulator based on in silico exome capture.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1076, doi. 10.1093/bioinformatics/btt074

By:

Kim, Sangwoo;
Jeong, Kyowon;
Bafna, Vineet

Publication type:

Article

Systematic parameter estimation in data-rich environments for cell signalling dynamics.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1044, doi. 10.1093/bioinformatics/btt083

By:

Nim, Tri Hieu;
Luo, Le;
Clément, Marie-Véronique;
White, Jacob K.;
Tucker-Kellogg, Lisa

Publication type:

Article

Robust data-driven incorporation of prior knowledge into the inference of dynamic regulatory networks.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1060, doi. 10.1093/bioinformatics/btt099

By:

Greenfield, Alex;
Hafemeister, Christoph;
Bonneau, Richard

Publication type:

Article

EBARDenovo: highly accurate de novo assembly of RNA-Seq with efficient chimera-detection.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1004, doi. 10.1093/bioinformatics/btt092

By:

Chu, Hsueh-Ting;
Hsiao, William W. L.;
Chen, Jen-Chih;
Yeh, Tze-Jung;
Tsai, Mong-Hsun;
Lin, Han;
Liu, Yen-Wenn;
Lee, Sheng-An;
Chen, Chaur-Chin;
Tsao, Theresa T. H.;
Kao, Cheng-Yan

Publication type:

Article

Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1026, doi. 10.1093/bioinformatics/btt075

By:

Yang, Can;
Wang, Lin;
Zhang, Shuqin;
Zhao, Hongyu

Publication type:

Article

DeconRNASeq: a statistical framework for deconvolution of heterogeneous tissue samples based on mRNA-Seq data.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1083, doi. 10.1093/bioinformatics/btt090

By:

Gong, Ting;
Szustakowski, Joseph D.

Publication type:

Article

Measuring guide-tree dependency of inferred gaps in progressive aligners.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1011, doi. 10.1093/bioinformatics/btt095

By:

Capella-Gutiérrez, Salvador;
Gabaldón, Toni

Publication type:

Article

Improvements on bicriteria pairwise sequence alignment: algorithms and applications.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 996, doi. 10.1093/bioinformatics/btt098

By:

Abbasi, Maryam;
Paquete, Luís;
Liefooghe, Arnaud;
Pinheiro, Miguel;
Matias, Pedro

Publication type:

Article

An approximate Bayesian approach for mapping paired-end DNA reads to a reference genome.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 965, doi. 10.1093/bioinformatics/btt073

By:

Shrestha, Anish Man Singh;
Frith, Martin C.

Publication type:

Article

The prediction of organelle-targeting peptides in eukaryotic proteins with Grammatical-Restrained Hidden Conditional Random Fields.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 981, doi. 10.1093/bioinformatics/btt089

By:

Indio, Valentina;
Martelli, Pier Luigi;
Savojardo, Castrense;
Fariselli, Piero;
Casadio, Rita

Publication type:

Article

Planform: an application and database of graph-encoded planarian regenerative experiments.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1098, doi. 10.1093/bioinformatics/btt088

By:

Lobo, Daniel;
Malone, Taylor J.;
Levin, Michael

Publication type:

Article

Protein signature-based estimation of metagenomic abundances including all domains of life and viruses.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 973, doi. 10.1093/bioinformatics/btt077

By:

Klingenberg, Heiner;
Aßhauer, Kathrin Petra;
Lingner, Thomas;
Meinicke, Peter

Publication type:

Article

ChemoPy: freely available python package for computational biology and chemoinformatics.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1092, doi. 10.1093/bioinformatics/btt105

By:

Cao, Dong-Sheng;
Xu, Qing-Song;
Hu, Qian-Nan;
Liang, Yi-Zeng

Publication type:

Article

QUAST: quality assessment tool for genome assemblies.

Published in:

Bioinformatics, 2013, v. 29, n. 8, p. 1072, doi. 10.1093/bioinformatics/btt086

By:

Gurevich, Alexey;
Saveliev, Vladislav;
Vyahhi, Nikolay;
Tesler, Glenn

Publication type:

Article