Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 5

Results: 24

DSK: k-mer counting with very low memory usage.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 652, doi. 10.1093/bioinformatics/btt020

By:

Rizk, Guillaume;
Lavenier, Dominique;
Chikhi, Rayan

Publication type:

Article

Systematic inference of highways of horizontal gene transfer in prokaryotes.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 571, doi. 10.1093/bioinformatics/btt021

By:

Bansal, Mukul S.;
Banay, Guy;
Harlow, Timothy J.;
Gogarten, J. Peter;
Shamir, Ron

Publication type:

Article

gKaKs: the pipeline for genome-level Ka/Ks calculation.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 645, doi. 10.1093/bioinformatics/btt009

By:

Zhang, Chengjun;
Wang, Jun;
Long, Manyuan;
Fan, Chuanzhu

Publication type:

Article

Fast alignment and comparison of RNA structures.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 588, doi. 10.1093/bioinformatics/btt006

By:

Wiegels, Tim;
Bienert, Stefan;
Torda, Andrew E.

Publication type:

Article

Bellman’s GAP—a language and compiler for dynamic programming in sequence analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 551, doi. 10.1093/bioinformatics/btt022

By:

Sauthoff, Georg;
Möhl, Mathias;
Janssen, Stefan;
Giegerich, Robert

Publication type:

Article

miRCancer: a microRNA–cancer association database constructed by text mining on literature.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 638, doi. 10.1093/bioinformatics/btt014

By:

Xie, Boya;
Ding, Qin;
Han, Hongjin;
Wu, Di

Publication type:

Article

Predicting protein β-sheet contacts using a maximum entropy-based correlated mutation measure.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 580, doi. 10.1093/bioinformatics/btt005

By:

Burkoff, Nikolas S.;
Várnai, Csilla;
Wild, David L.

Publication type:

Article

APoc: large-scale identification of similar protein pockets.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 597, doi. 10.1093/bioinformatics/btt024

By:

Gao, Mu;
Skolnick, Jeffrey

Publication type:

Article

Reconciling differential gene expression data with molecular interaction networks.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 622, doi. 10.1093/bioinformatics/btt007

By:

Poirel, Christopher L.;
Rahman, Ahsanur;
Rodrigues, Richard R.;
Krishnan, Arjun;
Addesa, Jacqueline R.;
Murali, T. M.

Publication type:

Article

Grape RNA-Seq analysis pipeline environment.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 614, doi. 10.1093/bioinformatics/btt016

By:

Knowles, David G.;
Röder, Maik;
Merkel, Angelika;
Guigó, Roderic

Publication type:

Article

SBSI: an extensible distributed software infrastructure for parameter estimation in systems biology.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 664, doi. 10.1093/bioinformatics/btt023

By:

Adams, Richard;
Clark, Allan;
Yamaguchi, Azusa;
Hanlon, Neil;
Tsorman, Nikos;
Ali, Shakir;
Lebedeva, Galina;
Goltsov, Alexey;
Sorokin, Anatoly;
Akman, Ozgur E.;
Troein, Carl;
Millar, Andrew J.;
Goryanin, Igor;
Gilmore, Stephen

Publication type:

Article

A coherent feedforward loop design principle to sustain robustness of biological networks.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 630, doi. 10.1093/bioinformatics/btt026

By:

Le, Duc-Hau;
Kwon, Yung-Keun

Publication type:

Article

Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 542, doi. 10.1093/bioinformatics/btt004

By:

Thomas, Niclas;
Heather, James;
Ndifon, Wilfred;
Shawe-Taylor, John;
Chain, Benjamin

Publication type:

Article

Scotty: a web tool for designing RNA-Seq experiments to measure differential gene expression.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 656, doi. 10.1093/bioinformatics/btt015

By:

Busby, Michele A.;
Stewart, Chip;
Miller, Chase A.;
Grzeda, Krzysztof R.;
Marth, Gabor T.

Publication type:

Article

CluePedia Cytoscape plugin: pathway insights using integrated experimental and in silico data.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 661, doi. 10.1093/bioinformatics/btt019

By:

Bindea, Gabriela;
Galon, Jérôme;
Mlecnik, Bernhard

Publication type:

Article

RamiGO: an R/Bioconductor package providing an AmiGO Visualize interface.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 666, doi. 10.1093/bioinformatics/bts708

By:

Schröder, Markus S.;
Gusenleitner, Daniel;
Quackenbush, John;
Culhane, Aedín C.;
Haibe-Kains, Benjamin

Publication type:

Article

SIBER: systematic identification of bimodally expressed genes using RNAseq data.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 605, doi. 10.1093/bioinformatics/bts713

By:

Tong, Pan;
Chen, Yong;
Su, Xiao;
Coombes, Kevin R.

Publication type:

Article

ViralFusionSeq: accurately discover viral integration events and reconstruct fusion transcripts at single-base resolution.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 649, doi. 10.1093/bioinformatics/btt011

By:

Li, Jing-Woei;
Wan, Raymond;
Yu, Chi-Shing;
Co, Ngai Na;
Wong, Nathalie;
Chan, Ting-Fung

Publication type:

Article

CePa: an R package for finding significant pathways weighted by multiple network centralities.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 658, doi. 10.1093/bioinformatics/btt008

By:

Gu, Zuguang;
Wang, Jin

Publication type:

Article

StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 654, doi. 10.1093/bioinformatics/btt025

By:

Arunapuram, Preeti;
Edvardsson, Ingolfur;
Golden, Michael;
Anderson, James W. J.;
Novák, Ádám;
Sükösd, Zsuzsanna;
Hein, Jotun

Publication type:

Article

CRAVAT: cancer-related analysis of variants toolkit.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 647, doi. 10.1093/bioinformatics/btt017

By:

Douville, Christopher;
Carter, Hannah;
Kim, Rick;
Niknafs, Noushin;
Diekhans, Mark;
Stenson, Peter D.;
Cooper, David N.;
Ryan, Michael;
Karchin, Rachel

Publication type:

Article

A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees.

Published in:

2013

By:

Silberstein, Mark;
Weissbrod, Omer;
Otten, Lars;
Tzemach, Anna;
Anisenia, Andrei;
Shtark, Oren;
Tuberg, Dvir;
Galfrin, Eddie;
Gannon, Irena;
Shalata, Adel;
Borochowitz, Zvi U.;
Dechter, Rina;
Thompson, Elizabeth;
Geiger, Dan

Publication type:

Correction Notice

Sparsely correlated hidden Markov models with application to genome-wide location studies.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 533, doi. 10.1093/bioinformatics/btt012

By:

Choi, Hyungwon;
Fermin, Damian;
Nesvizhskii, Alexey I.;
Ghosh, Debashis;
Qin, Zhaohui S.

Publication type:

Article

Searching for virus phylotypes.

Published in:

Bioinformatics, 2013, v. 29, n. 5, p. 561, doi. 10.1093/bioinformatics/btt010

By:

Chevenet, François;
Jung, Matthieu;
Peeters, Martine;
de Oliveira, Tulio;
Gascuel, Olivier

Publication type:

Article