Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 24

Results: 27

BSeQC: quality control of bisulfite sequencing experiments.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3227, doi. 10.1093/bioinformatics/btt548

By:

Lin, Xueqiu;
Sun, Deqiang;
Rodriguez, Benjamin;
Zhao, Qian;
Sun, Hanfei;
Zhang, Yong;
Li, Wei

Publication type:

Article

Fuzzy optimization for detecting enzyme targets of human uric acid metabolism.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3191, doi. 10.1093/bioinformatics/btt564

By:

Hsu, Kai-Cheng;
Wang, Feng-Sheng

Publication type:

Article

ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3220, doi. 10.1093/bioinformatics/btt551

By:

Huntley, Melanie A.;
Larson, Jessica L.;
Chaivorapol, Christina;
Becker, Gabriel;
Lawrence, Michael;
Hackney, Jason A.;
Kaminker, Joshua S.

Publication type:

Article

DockAFM: benchmarking protein structures by docking under AFM topographs.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3230, doi. 10.1093/bioinformatics/btt561

By:

Chaves, Rui C.;
Pellequer, Jean-Luc

Publication type:

Article

Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3135, doi. 10.1093/bioinformatics/btt554

By:

Zou, Lingyun;
Nan, Chonghan;
Hu, Fuquan

Publication type:

Article

MS2PIP: a tool for MS/MS peak intensity prediction.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3199, doi. 10.1093/bioinformatics/btt544

By:

Degroeve, Sven;
Martens, Lennart

Publication type:

Article

An alignment-free test for recombination.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3121, doi. 10.1093/bioinformatics/btt550

By:

Haubold, Bernhard;
Krause, Linda;
Horn, Thomas;
Pfaffelhuber, Peter

Publication type:

Article

Optimized atomic statistical potentials: assessment of protein interfaces and loops.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3158, doi. 10.1093/bioinformatics/btt560

By:

Dong, Guang Qiang;
Fan, Hao;
Schneidman-Duhovny, Dina;
Webb, Ben;
Sali, Andrej

Publication type:

Article

Lep-MAP: fast and accurate linkage map construction for large SNP datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3128, doi. 10.1093/bioinformatics/btt563

By:

Rastas, Pasi;
Paulin, Lars;
Hanski, Ilkka;
Lehtonen, Rainer;
Auvinen, Petri

Publication type:

Article

ISCB/SPRINGER series in computational biology.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3246, doi. 10.1093/bioinformatics/btt630

By:

Dress, Andreas;
Linial, Michal;
Troyanskaya, Olga;
Vingron, Martin

Publication type:

Article

Are graph databases ready for bioinformatics?

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3107, doi. 10.1093/bioinformatics/btt549

By:

Have, Christian Theil;
Jensen, Lars Juhl

Publication type:

Article

BlastGraph: a comparative genomics tool based on BLAST and graph algorithms.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3222, doi. 10.1093/bioinformatics/btt553

By:

Ye, Yanbo;
Wei, Bo;
Wen, Lei;
Rayner, Simon

Publication type:

Article

BCov: a method for predicting β-sheet topology using sparse inverse covariance estimation and integer programming.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3151, doi. 10.1093/bioinformatics/btt555

By:

Savojardo, Castrense;
Fariselli, Piero;
Martelli, Pier Luigi;
Casadio, Rita

Publication type:

Article

STAR: an integrated solution to management and visualization of sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3204, doi. 10.1093/bioinformatics/btt558

By:

Wang, Tao;
Liu, Jie;
Shen, Li;
Tonti-Filippini, Julian;
Zhu, Yun;
Jia, Haiyang;
Lister, Ryan;
Whitaker, John W.;
Ecker, Joseph R.;
Millar, A. Harvey;
Ren, Bing;
Wang, Wei

Publication type:

Article

ISCB: past–present perspective for the International Society for Computational Biology.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3243, doi. 10.1093/bioinformatics/btt629

By:

Rost, Burkhard

Publication type:

Article

Methods and challenges in timing chromosomal abnormalities within cancer samples.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3113, doi. 10.1093/bioinformatics/btt546

By:

Purdom, Elizabeth;
Ho, Christine;
Grasso, Catherine S.;
Quist, Michael J.;
Cho, Raymond J.;
Spellman, Paul

Publication type:

Article

BioServices: a common Python package to access biological Web Services programmatically.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3241, doi. 10.1093/bioinformatics/btt547

By:

Cokelaer, Thomas;
Pultz, Dennis;
Harder, Lea M.;
Serra-Musach, Jordi;
Saez-Rodriguez, Julio

Publication type:

Article

Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3109, doi. 10.1093/bioinformatics/btt542

By:

Jjingo, Daudi;
Wang, Jianrong;
Conley, Andrew B.;
Lunyak, Victoria V.;
Jordan, I. King

Publication type:

Article

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3235, doi. 10.1093/bioinformatics/btt543

By:

Wang, Xiaojing;
Zhang, Bing

Publication type:

Article

QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cells.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3181, doi. 10.1093/bioinformatics/btt552

By:

Fisher, Ciarán P.;
Plant, Nicholas J.;
Moore, J. Bernadette;
Kierzek, Andrzej M.

Publication type:

Article

GPCR ontology: development and application of a G protein-coupled receptor pharmacology knowledge framework.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3211, doi. 10.1093/bioinformatics/btt565

By:

Przydzial, Magdalena J.;
Bhhatarai, Barun;
Koleti, Amar;
Vempati, Uma;
Schürer, Stephan C.

Publication type:

Article

Design and analysis of large-scale biological rhythm studies: a comparison of algorithms for detecting periodic signals in biological data.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3174, doi. 10.1093/bioinformatics/btt541

By:

Deckard, Anastasia;
Anafi, Ron C.;
Hogenesch, John B.;
Haase, Steven B.;
Harer, John

Publication type:

Article

Molecular causes of transcriptional response: a Bayesian prior knowledge approach.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3167, doi. 10.1093/bioinformatics/btt557

By:

Zarringhalam, Kourosh;
Enayetallah, Ahmed;
Gutteridge, Alex;
Sidders, Ben;
Ziemek, Daniel

Publication type:

Article

MATE-CLEVER: Mendelian-inheritance-aware discovery and genotyping of midsize and long indels.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3143, doi. 10.1093/bioinformatics/btt556

By:

Marschall, Tobias;
Hajirasouliha, Iman;
Schönhuth, Alexander

Publication type:

Article

WebGLORE: a Web service for Grid LOgistic REgression.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3238, doi. 10.1093/bioinformatics/btt559

By:

Jiang, Wenchao;
Li, Pinghao;
Wang, Shuang;
Wu, Yuan;
Xue, Meng;
Ohno-Machado, Lucila;
Jiang, Xiaoqian

Publication type:

Article

miREval 2.0: a web tool for simple microRNA prediction in genome sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3225, doi. 10.1093/bioinformatics/btt545

By:

Gao, Dadi;
Middleton, Robert;
Rasko, John E. J.;
Ritchie, William

Publication type:

Article

INVEX—a web-based tool for integrative visualization of expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 24, p. 3232, doi. 10.1093/bioinformatics/btt562

By:

Xia, Jianguo;
Lyle, Ngan H.;
Mayer, Matthew L.;
Pena, Olga M.;
Hancock, Robert E. W.

Publication type:

Article