Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 22

Results: 28

Strengths and limitations of microarray-based phenotype prediction: lessons learned from the IMPROVER Diagnostic Signature Challenge.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2892, doi. 10.1093/bioinformatics/btt492

By:

Tarca, Adi L.;
Lauria, Mario;
Unger, Michael;
Bilal, Erhan;
Boue, Stephanie;
Kumar Dey, Kushal;
Hoeng, Julia;
Koeppl, Heinz;
Martin, Florian;
Meyer, Pablo;
Nandy, Preetam;
Norel, Raquel;
Peitsch, Manuel;
Rice, Jeremy J.;
Romero, Roberto;
Stolovitzky, Gustavo;
Talikka, Marja;
Xiang, Yang;
Zechner, Christoph

Publication type:

Article

PyroHMMvar: a sensitive and accurate method to call short indels and SNPs for Ion Torrent and 454 data.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2859, doi. 10.1093/bioinformatics/btt512

By:

Zeng, Feng;
Jiang, Rui;
Chen, Ting

Publication type:

Article

TALENoffer: genome-wide TALEN off-target prediction.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2931, doi. 10.1093/bioinformatics/btt501

By:

Grau, Jan;
Boch, Jens;
Posch, Stefan

Publication type:

Article

RNAfbinv: an interactive Java application for fragment-based design of RNA sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2938, doi. 10.1093/bioinformatics/btt494

By:

Weinbrand, Lina;
Avihoo, Assaf;
Barash, Danny

Publication type:

Article

A general species delimitation method with applications to phylogenetic placements.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2869, doi. 10.1093/bioinformatics/btt499

By:

Zhang, Jiajie;
Kapli, Paschalia;
Pavlidis, Pavlos;
Stamatakis, Alexandros

Publication type:

Article

OntoQuery: easy-to-use web-based OWL querying.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2955, doi. 10.1093/bioinformatics/btt514

By:

Tudose, Ilinca;
Hastings, Janna;
Muthukrishnan, Venkatesh;
Owen, Gareth;
Turner, Steve;
Dekker, Adriano;
Kale, Namrata;
Ennis, Marcus;
Steinbeck, Christoph

Publication type:

Article

Metriculator: quality assessment for mass spectrometry-based proteomics.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2948, doi. 10.1093/bioinformatics/btt510

By:

Taylor, Ryan M.;
Dance, Jamison;
Taylor, Russ J.;
Prince, John T.

Publication type:

Article

SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2943, doi. 10.1093/bioinformatics/btt511

By:

Katayama, Shintaro;
Töhönen, Virpi;
Linnarsson, Sten;
Kere, Juha

Publication type:

Article

Consed: a graphical editor for next-generation sequencing.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2936, doi. 10.1093/bioinformatics/btt515

By:

Gordon, David;
Green, Phil

Publication type:

Article

Exploring variation-aware contig graphs for (comparative) metagenomics using MaryGold.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2826, doi. 10.1093/bioinformatics/btt502

By:

Nijkamp, Jurgen F.;
Pop, Mihai;
Reinders, Marcel J. T.;
de Ridder, Dick

Publication type:

Article

Quantifying the complexity of medical research.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2918, doi. 10.1093/bioinformatics/btt505

By:

Rodriguez-Esteban, Raul;
Loging, William T.

Publication type:

Article

The code structure of the p53 DNA-binding domain and the prognosis of breast cancer patients.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2822, doi. 10.1093/bioinformatics/btt497

By:

Sato, Keiko;
Hara, Toshihide;
Ohya, Masanori

Publication type:

Article

A statistical variant calling approach from pedigree information and local haplotyping with phase informative reads.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2835, doi. 10.1093/bioinformatics/btt503

By:

Kojima, Kaname;
Nariai, Naoki;
Mimori, Takahiro;
Takahashi, Mamoru;
Yamaguchi-Kabata, Yumi;
Sato, Yukuto;
Nagasaki, Masao

Publication type:

Article

NetWeAvers: an R package for integrative biological network analysis with mass spectrometry data.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2946, doi. 10.1093/bioinformatics/btt513

By:

McClellan, Elizabeth A.;
Moerland, Perry D.;
van der Spek, Peter J.;
Stubbs, Andrew P.

Publication type:

Article

INSECT: IN-silico SEarch for Co-occurring Transcription factors.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2852, doi. 10.1093/bioinformatics/btt506

By:

Rohr, Cristian O.;
Parra, R. Gonzalo;
Yankilevich, Patricio;
Perez-Castro, Carolina

Publication type:

Article

GIM3E: condition-specific models of cellular metabolism developed from metabolomics and expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2900, doi. 10.1093/bioinformatics/btt493

By:

Schmidt, Brian J.;
Ebrahim, Ali;
Metz, Thomas O.;
Adkins, Joshua N.;
Palsson, Bernhard Ø.;
Hyduke, Daniel R.

Publication type:

Article

Infernal 1.1: 100-fold faster RNA homology searches.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2933, doi. 10.1093/bioinformatics/btt509

By:

Nawrocki, Eric P.;
Eddy, Sean R.

Publication type:

Article

Determination of genomic copy number alteration emphasizing a restriction site-based strategy of genome re-sequencing.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2813, doi. 10.1093/bioinformatics/btt481

By:

Zheng, Caihong;
Miao, Xuexia;
Li, Yanen;
Huang, Ying;
Ruan, Jue;
Ma, Xi;
Wang, Li;
Wu, Chung-I;
Cai, Jun

Publication type:

Article

DIST: direct imputation of summary statistics for unmeasured SNPs.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2925, doi. 10.1093/bioinformatics/btt500

By:

Lee, Donghyung;
Bigdeli, T. Bernard;
Riley, Brien P.;
Fanous, Ayman H.;
Bacanu, Silviu-Alin

Publication type:

Article

M2SG: mapping human disease-related genetic variants to protein sequences and genomic loci.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2953, doi. 10.1093/bioinformatics/btt507

By:

Ji, Renkai;
Cong, Qian;
Li, Wenlin;
Grishin, Nick V.

Publication type:

Article

A-clustering: a novel method for the detection of co-regulated methylation regions, and regions associated with exposure.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2884, doi. 10.1093/bioinformatics/btt498

By:

Sofer, Tamar;
Schifano, Elizabeth D.;
Hoppin, Jane A.;
Hou, Lifang;
Baccarelli, Andrea A.

Publication type:

Article

SubNet: a Java application for subnetwork extraction.

Published in:

2013

By:

Lemetre, Christophe;
Zhang, Quanwei;
Zhang, Zhengdong D.

Publication type:

Correction Notice

A new statistic for identifying batch effects in high-throughput genomic data that uses guided principal component analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2877, doi. 10.1093/bioinformatics/btt480

By:

Reese, Sarah E.;
Archer, Kellie J.;
Therneau, Terry M.;
Atkinson, Elizabeth J.;
Vachon, Celine M.;
de Andrade, Mariza;
Kocher, Jean-Pierre A.;
Eckel-Passow, Jeanette E.

Publication type:

Article

The Xeno-glycomics database (XDB): a relational database of qualitative and quantitative pig glycome repertoire.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2950, doi. 10.1093/bioinformatics/btt504

By:

Park, Hae-Min;
Park, Ju-Hyeong;
Kim, Yoon-Woo;
Kim, Kyoung-Jin;
Jeong, Hee-Jin;
Jang, Kyoung-Soon;
Kim, Byung-Gee;
Kim, Yun-Gon

Publication type:

Article

catRAPID omics: a web server for large-scale prediction of protein–RNA interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2928, doi. 10.1093/bioinformatics/btt495

By:

Agostini, Federico;
Zanzoni, Andreas;
Klus, Petr;
Marchese, Domenica;
Cirillo, Davide;
Tartaglia, Gian Gaetano

Publication type:

Article

DNorm: disease name normalization with pairwise learning to rank.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2909, doi. 10.1093/bioinformatics/btt474

By:

Leaman, Robert;
Islamaj Doğan, Rezarta;
Lu, Zhiyong

Publication type:

Article

Assessing the validity and reproducibility of genome-scale predictions.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2844, doi. 10.1093/bioinformatics/btt508

By:

Sugden, Lauren A.;
Tackett, Michael R.;
Savva, Yiannis A.;
Thompson, William A.;
Lawrence, Charles E.

Publication type:

Article

RNA secondary structure diagrams for very large molecules: RNAfdl.

Published in:

Bioinformatics, 2013, v. 29, n. 22, p. 2941, doi. 10.1093/bioinformatics/btt496

By:

Hecker, Nikolai;
Wiegels, Tim;
Torda, Andrew E.

Publication type:

Article