Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 21

Results: 27

Identification of transcription factor binding sites from ChIP-seq data at high resolution.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2705, doi. 10.1093/bioinformatics/btt470

By:

Bardet, Anaïs F.;
Steinmann, Jonas;
Bafna, Sangeeta;
Knoblich, Juergen A.;
Zeitlinger, Julia;
Stark, Alexander

Publication type:

Article

Imputation of coding variants in African Americans: better performance using data from the exome sequencing project.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2744, doi. 10.1093/bioinformatics/btt477

By:

Duan, Qing;
Liu, Eric Yi;
Auer, Paul L.;
Zhang, Guosheng;
Lange, Ethan M.;
Jun, Goo;
Bizon, Chris;
Jiao, Shuo;
Buyske, Steven;
Franceschini, Nora;
Carlson, Chris S.;
Hsu, Li;
Reiner, Alex P.;
Peters, Ulrike;
Haessler, Jeffrey;
Curtis, Keith;
Wassel, Christina L.;
Robinson, Jennifer G.;
Martin, Lisa W.;
Haiman, Christopher A.

Publication type:

Article

Badger—an accessible genome exploration environment.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2788, doi. 10.1093/bioinformatics/btt466

By:

Elsworth, Ben;
Jones, Martin;
Blaxter, Mark

Publication type:

Article

Bayesian Network Webserver: a comprehensive tool for biological network modeling.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2801, doi. 10.1093/bioinformatics/btt472

By:

Ziebarth, Jesse D.;
Bhattacharya, Anindya;
Cui, Yan

Publication type:

Article

A combined omics study on activated macrophages—enhanced role of STATs in apoptosis, immunity and lipid metabolism.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2735, doi. 10.1093/bioinformatics/btt469

By:

Dinasarapu, Ashok Reddy;
Gupta, Shakti;
Ram Maurya, Mano;
Fahy, Eoin;
Min, Jun;
Sud, Manish;
Gersten, Merril J.;
Glass, Christopher K.;
Subramaniam, Shankar

Publication type:

Article

Efficient inference of local ancestry.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2750, doi. 10.1093/bioinformatics/btt488

By:

Yang, James J.;
Li, Jia;
Buu, Anne;
Williams, L. K.

Publication type:

Article

Exploiting disjointness axioms to improve semantic similarity measures.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2781, doi. 10.1093/bioinformatics/btt491

By:

Ferreira, João D.;
Hastings, Janna;
Couto, Francisco M.

Publication type:

Article

iBMQ: a R/Bioconductor package for integrated Bayesian modeling of eQTL data.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2797, doi. 10.1093/bioinformatics/btt485

By:

Imholte, Greg C.;
Scott-Boyer, Marie-Pier;
Labbe, Aurélie;
Deschepper, Christian F.;
Gottardo, Raphael

Publication type:

Article

Discovering causal pathways linking genomic events to transcriptional states using Tied Diffusion Through Interacting Events (TieDIE).

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2757, doi. 10.1093/bioinformatics/btt471

By:

Paull, Evan O.;
Carlin, Daniel E.;
Niepel, Mario;
Sorger, Peter K.;
Haussler, David;
Stuart, Joshua M.

Publication type:

Article

RDAVIDWebService: a versatile R interface to DAVID.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2810, doi. 10.1093/bioinformatics/btt487

By:

Fresno, Cristóbal;
Fernández, Elmer A.

Publication type:

Article

PRAP: an ab initio software package for automated genome-wide analysis of DNA repeats for prokaryotes.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2683, doi. 10.1093/bioinformatics/btt482

By:

Chen, Gwo-Liang;
Chang, Yun-Juan;
Hsueh, Chun-Hway

Publication type:

Article

Multiple alignment-free sequence comparison.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2690, doi. 10.1093/bioinformatics/btt462

By:

Ren, Jie;
Song, Kai;
Sun, Fengzhu;
Deng, Minghua;
Reinert, Gesine

Publication type:

Article

eSBMTools 1.0: enhanced native structure-based modeling tools.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2795, doi. 10.1093/bioinformatics/btt478

By:

Lutz, Benjamin;
Sinner, Claude;
Heuermann, Geertje;
Verma, Abhinav;
Schug, Alexander

Publication type:

Article

HippDB: a database of readily targeted helical protein–protein interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2806, doi. 10.1093/bioinformatics/btt483

By:

Bergey, Christina M.;
Watkins, Andrew M.;
Arora, Paramjit S.

Publication type:

Article

Accounting for epistatic interactions improves the functional analysis of protein structures.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2714, doi. 10.1093/bioinformatics/btt489

By:

Wilkins, Angela D.;
Venner, Eric;
Marciano, David C.;
Erdin, Serkan;
Atri, Benu;
Lua, Rhonald C.;
Lichtarge, Olivier

Publication type:

Article

LC-IMS-MS Feature Finder: detecting multidimensional liquid chromatography, ion mobility and mass spectrometry features in complex datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2804, doi. 10.1093/bioinformatics/btt465

By:

Crowell, Kevin L.;
Slysz, Gordon W.;
Baker, Erin S.;
LaMarche, Brian L.;
Monroe, Matthew E.;
Ibrahim, Yehia M.;
Payne, Samuel H.;
Anderson, Gordon A.;
Smith, Richard D.

Publication type:

Article

Multi-profile Bayesian alignment model for LC-MS data analysis with integration of internal standards.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2774, doi. 10.1093/bioinformatics/btt461

By:

Tsai, Tsung-Heng;
Tadesse, Mahlet G.;
Di Poto, Cristina;
Pannell, Lewis K.;
Mechref, Yehia;
Wang, Yue;
Ressom, Habtom W.

Publication type:

Article

Optimizing a global alignment of protein interaction networks.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2765, doi. 10.1093/bioinformatics/btt486

By:

Chindelevitch, Leonid;
Ma, Cheng-Yu;
Liao, Chung-Shou;
Berger, Bonnie

Publication type:

Article

fmcsR: mismatch tolerant maximum common substructure searching in R.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2792, doi. 10.1093/bioinformatics/btt475

By:

Wang, Yan;
Backman, Tyler W. H.;
Horan, Kevin;
Girke, Thomas

Publication type:

Article

Use of autocorrelation scanning in DNA copy number analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2678, doi. 10.1093/bioinformatics/btt479

By:

Zhang, Liangcai;
Zhang, Li

Publication type:

Article

lDDT: a local superposition-free score for comparing protein structures and models using distance difference tests.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2722, doi. 10.1093/bioinformatics/btt473

By:

Mariani, Valerio;
Biasini, Marco;
Barbato, Alessandro;
Schwede, Torsten

Publication type:

Article

NextGenMap: fast and accurate read mapping in highly polymorphic genomes.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2790, doi. 10.1093/bioinformatics/btt468

By:

Sedlazeck, Fritz J.;
Rescheneder, Philipp;
von Haeseler, Arndt

Publication type:

Article

ProteoStats—a library for estimating false discovery rates in proteomics pipelines.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2799, doi. 10.1093/bioinformatics/btt490

By:

Yadav, Amit Kumar;
Kadimi, Puneet Kumar;
Kumar, Dhirendra;
Dash, Debasis

Publication type:

Article

A fast Peptide Match service for UniProt Knowledgebase.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2808

By:

Chen, Chuming;
Li, Zhiwen;
Huang, Hongzhan;
Suzek, Baris E.;
Wu, Cathy H.

Publication type:

Article

The MaSuRCA genome assembler.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2669, doi. 10.1093/bioinformatics/btt476

By:

Zimin, Aleksey V.;
Marçais, Guillaume;
Puiu, Daniela;
Roberts, Michael;
Salzberg, Steven L.;
Yorke, James A.

Publication type:

Article

A non-independent energy-based multiple sequence alignment improves prediction of transcription factor binding sites.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2699, doi. 10.1093/bioinformatics/btt463

By:

Salama, Rafik A.;
Stekel, Dov J.

Publication type:

Article

Identifying differentially expressed proteins in two-dimensional electrophoresis experiments: inputs from transcriptomics statistical tools.

Published in:

Bioinformatics, 2013, v. 29, n. 21, p. 2729, doi. 10.1093/bioinformatics/btt464

By:

Artigaud, Sébastien;
Gauthier, Olivier;
Pichereau, Vianney

Publication type:

Article