Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 20

Results: 29

Analysis of base-pairing probabilities of RNA molecules involved in protein–RNA interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2524, doi. 10.1093/bioinformatics/btt453

By:

Iwakiri, Junichi;
Kameda, Tomoshi;
Asai, Kiyoshi;
Hamada, Michiaki

Publication type:

Article

High-accuracy prediction of transmembrane inter-helix contacts and application to GPCR 3D structure modeling.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2579, doi. 10.1093/bioinformatics/btt440

By:

Yang, Jing;
Jang, Richard;
Zhang, Yang;
Shen, Hong-Bin

Publication type:

Article

The BioPAX Validator.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2659, doi. 10.1093/bioinformatics/btt452

By:

Rodchenkov, Igor;
Demir, Emek;
Sander, Chris;
Bader, Gary D.

Publication type:

Article

targetHub: a programmable interface for miRNA–gene interactions.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2657, doi. 10.1093/bioinformatics/btt439

By:

Manyam, Ganiraju;
Ivan, Cristina;
Calin, George A.;
Coombes, Kevin R.

Publication type:

Article

Pclust: protein network visualization highlighting experimental data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2647, doi. 10.1093/bioinformatics/btt451

By:

Li, Wenlin;
Kinch, Lisa N.;
Grishin, Nick V.

Publication type:

Article

Identification of active transcription factor and miRNA regulatory pathways in Alzheimer’s disease.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2596, doi. 10.1093/bioinformatics/btt423

By:

Jiang, Wei;
Zhang, Yan;
Meng, Fanlin;
Lian, Baofeng;
Chen, Xiaowen;
Yu, Xuexin;
Dai, Enyu;
Wang, Shuyuan;
Liu, Xinyi;
Li, Xiang;
Wang, Lihong;
Li, Xia

Publication type:

Article

MITIE: Simultaneous RNA-Seq-based transcript identification and quantification in multiple samples.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2529, doi. 10.1093/bioinformatics/btt442

By:

Behr, Jonas;
Kahles, André;
Zhong, Yi;
Sreedharan, Vipin T.;
Drewe, Philipp;
Rätsch, Gunnar

Publication type:

Article

Inferring nucleosome positions with their histone mark annotation from ChIP data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2547, doi. 10.1093/bioinformatics/btt449

By:

Mammana, Alessandro;
Vingron, Martin;
Chung, Ho-Ryun

Publication type:

Article

WebRASP: a server for computing energy scores to assess the accuracy and stability of RNA 3D structures.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2649, doi. 10.1093/bioinformatics/btt441

By:

Norambuena, Tomas;
Cares, Jorge F.;
Capriotti, Emidio;
Melo, Francisco

Publication type:

Article

Corrigendum of ‘High throughput analysis of epistasis in genome-wide association studies with BiForce’.

Published in:

2013

By:

Gyenesei, Attila;
Semple, Colin A.M.;
Haley, Chris S.;
Wei, Wen-Hua

Publication type:

Erratum

Bayesian consensus clustering.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2610, doi. 10.1093/bioinformatics/btt425

By:

Lock, Eric F.;
Dunson, David B.

Publication type:

Article

Oncofuse: a computational framework for the prediction of the oncogenic potential of gene fusions.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2539, doi. 10.1093/bioinformatics/btt445

By:

Shugay, Mikhail;
Ortiz de Mendíbil, Iñigo;
Vizmanos, José L.;
Novo, Francisco J.

Publication type:

Article

On representative and illustrative comparisons with real data in bioinformatics: response to the letter to the editor by Smith et al.

Published in:

2013

By:

Boulesteix, Anne-Laure

Publication type:

Letter

CellMissy: a tool for management, storage and analysis of cell migration data produced in wound healing-like assays.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2661, doi. 10.1093/bioinformatics/btt437

By:

Masuzzo, Paola;
Hulstaert, Niels;
Huyck, Lynn;
Ampe, Christophe;
Van Troys, Marleen;
Martens, Lennart

Publication type:

Article

Novel human lncRNA–disease association inference based on lncRNA expression profiles.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2617, doi. 10.1093/bioinformatics/btt426

By:

Chen, Xing;
Yan, Gui-Ying

Publication type:

Article

Scaffold network generator: a tool for mining molecular structures.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2655, doi. 10.1093/bioinformatics/btt448

By:

Matlock, Matt K.;
Zaretzki, Jed M.;
Swamidass, S. Joshua

Publication type:

Article

nCal: an R package for non-linear calibration.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2653, doi. 10.1093/bioinformatics/btt456

By:

Fong, Youyi;
Sebestyen, Krisztian;
Yu, Xuesong;
Gilbert, Peter;
Self, Steve

Publication type:

Article

omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2651

By:

Müller, Sören;
Rycak, Lukas;
Winter, Peter;
Kahl, Günter;
Koch, Ina;
Rotter, Björn

Publication type:

Article

A distance-based test of association between paired heterogeneous genomic data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2555, doi. 10.1093/bioinformatics/btt450

By:

Minas, Christopher;
Curry, Edward;
Montana, Giovanni

Publication type:

Article

MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2645, doi. 10.1093/bioinformatics/btt459

By:

Qu, Jianghan;
Zhou, Meng;
Song, Qiang;
Hong, Elizabeth E.;
Smith, Andrew D.

Publication type:

Article

Incorporating prior knowledge into Gene Network Study.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2633, doi. 10.1093/bioinformatics/btt443

By:

Wang, Zixing;
Xu, Wenlong;
San Lucas, F. Anthony;
Liu, Yin

Publication type:

Article

Accurate identification of polyadenylation sites from 3′ end deep sequencing using a naïve Bayes classifier.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2564, doi. 10.1093/bioinformatics/btt446

By:

Sheppard, Sarah;
Lawson, Nathan D.;
Zhu, Lihua Julie

Publication type:

Article

A Turing test for artificial expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2603, doi. 10.1093/bioinformatics/btt438

By:

Maier, Robert;
Zimmer, Ralf;
Küffner, Robert

Publication type:

Article

PARSEC: PAtteRn SEarch and Contextualization.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2643, doi. 10.1093/bioinformatics/btt455

By:

Allot, Alexis;
Anno, Yannick-Noël;
Poidevin, Laetitia;
Ripp, Raymond;
Poch, Olivier;
Lecompte, Odile

Publication type:

Article

Protein–ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2588, doi. 10.1093/bioinformatics/btt447

By:

Yang, Jianyi;
Roy, Ambrish;
Zhang, Yang

Publication type:

Article

Near-optimal experimental design for model selection in systems biology.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2625, doi. 10.1093/bioinformatics/btt436

By:

Busetto, Alberto Giovanni;
Hauser, Alain;
Krummenacher, Gabriel;
Sunnåker, Mikael;
Dimopoulos, Sotiris;
Ong, Cheng Soon;
Stelling, Jörg;
Buhmann, Joachim M.

Publication type:

Article

isomiRID: a framework to identify microRNA isoforms.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2521, doi. 10.1093/bioinformatics/btt424

By:

de Oliveira, Luiz Felipe Valter;
Christoff, Ana Paula;
Margis, Rogerio

Publication type:

Article

Genome compression: a novel approach for large collections.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2572, doi. 10.1093/bioinformatics/btt460

By:

Deorowicz, Sebastian;
Danek, Agnieszka;
Grabowski, Szymon

Publication type:

Article

SPOCS: software for predicting and visualizing orthology/paralogy relationships among genomes.

Published in:

Bioinformatics, 2013, v. 29, n. 20, p. 2641, doi. 10.1093/bioinformatics/btt454

By:

Curtis, Darren S.;
Phillips, Aaron R.;
Callister, Stephen J.;
Conlan, Sean;
McCue, Lee Ann

Publication type:

Article