Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 2

Results: 30

An application of a relational database system for high-throughput prediction of elemental compositions from accurate mass values.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 290, doi. 10.1093/bioinformatics/bts660

By:

Sakurai, Nozomu;
Ara, Takeshi;
Kanaya, Shigehiko;
Nakamura, Yukiko;
Iijima, Yoko;
Enomoto, Mitsuo;
Motegi, Takeshi;
Aoki, Koh;
Suzuki, Hideyuki;
Shibata, Daisuke

Publication type:

Article

A Lasso multi-marker mixed model for association mapping with population structure correction.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 206, doi. 10.1093/bioinformatics/bts669

By:

Rakitsch, Barbara;
Lippert, Christoph;
Stegle, Oliver;
Borgwardt, Karsten

Publication type:

Article

Drug–target interaction prediction by learning from local information and neighbors.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 238, doi. 10.1093/bioinformatics/bts670

By:

Mei, Jian-Ping;
Kwoh, Chee-Keong;
Yang, Peng;
Li, Xiao-Li;
Zheng, Jie

Publication type:

Article

Bioclipse-R: integrating management and visualization of life science data with statistical analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 286, doi. 10.1093/bioinformatics/bts681

By:

Spjuth, Ola;
Georgiev, Valentin;
Carlsson, Lars;
Alvarsson, Jonathan;
Berg, Arvid;
Willighagen, Egon;
Wikberg, Jarl E.S.;
Eklund, Martin

Publication type:

Article

Defining and predicting structurally conserved regions in protein superfamilies.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 175, doi. 10.1093/bioinformatics/bts682

By:

Huang, Ivan K.;
Pei, Jimin;
Grishin, Nick V.

Publication type:

Article

VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 266, doi. 10.1093/bioinformatics/bts665

By:

Chen, Yunxin;
Yao, Hui;
Thompson, Erika J.;
Tannir, Nizar M.;
Weinstein, John N.;
Su, Xiaoping

Publication type:

Article

Intron-centric estimation of alternative splicing from RNA-seq data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 273, doi. 10.1093/bioinformatics/bts678

By:

Pervouchine, Dmitri D.;
Knowles, David G.;
Guigó, Roderic

Publication type:

Article

HD-CNV: hotspot detector for copy number variants.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 262, doi. 10.1093/bioinformatics/bts650

By:

Butler, Jenna L.;
Osborne Locke, Marjorie Elizabeth;
Hill, Kathleen A.;
Daley, Mark

Publication type:

Article

Scaffolding low quality genomes using orthologous protein sequences.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 160

By:

Li, Yang I.;
Copley, Richard R.

Publication type:

Article

An empirical Bayes approach for analysis of diverse periodic trends in time-course gene expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 182, doi. 10.1093/bioinformatics/bts672

By:

Kocak, Mehmet;
Olusegun George, E.;
Pyne, Saumyadipta;
Pounds, Stanley

Publication type:

Article

mzMatch–ISO: an R tool for the annotation and relative quantification of isotope-labelled mass spectrometry data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 281, doi. 10.1093/bioinformatics/bts674

By:

Chokkathukalam, Achuthanunni;
Jankevics, Andris;
Creek, Darren J.;
Achcar, Fiona;
Barrett, Michael P.;
Breitling, Rainer

Publication type:

Article

DOOSS: a tool for visual analysis of data overlaid on secondary structures.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 271, doi. 10.1093/bioinformatics/bts667

By:

Golden, Michael;
Martin, Darren

Publication type:

Article

Non-redundant compendium of human ncRNA genes in GeneCards.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 255, doi. 10.1093/bioinformatics/bts676

By:

Belinky, Frida;
Bahir, Iris;
Stelzer, Gil;
Zimmerman, Shahar;
Rosen, Naomi;
Nativ, Noam;
Dalah, Irina;
Iny Stein, Tsippi;
Rappaport, Noa;
Mituyama, Toutai;
Safran, Marilyn;
Lancet, Doron

Publication type:

Article

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 189, doi. 10.1093/bioinformatics/bts680

By:

Teschendorff, Andrew E.;
Marabita, Francesco;
Lechner, Matthias;
Bartlett, Thomas;
Tegner, Jesper;
Gomez-Cabrero, David;
Beck, Stephan

Publication type:

Article

PTID: an integrated web resource and computational tool for agrochemical discovery.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 292, doi. 10.1093/bioinformatics/bts651

By:

Gong, Jiayu;
Liu, Xiaofeng;
Cao, Xianwen;
Diao, Yanyan;
Gao, Daqi;
Li, Honglin;
Qian, Xuhong

Publication type:

Article

NetCAD: a network analysis tool for coronary artery disease-associated PPI network.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 279, doi. 10.1093/bioinformatics/bts666

By:

Ren, Guomin;
Liu, Zhihua

Publication type:

Article

Bridging the scales: semantic integration of quantitative SBML in graphical multi-cellular models and simulations with EPISIM and COPASI.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 223, doi. 10.1093/bioinformatics/bts659

By:

Sütterlin, Thomas;
Kolb, Christoph;
Dickhaus, Hartmut;
Jäger, Dirk;
Grabe, Niels

Publication type:

Article

iBAG: integrative Bayesian analysis of high-dimensional multiplatform genomics data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 149, doi. 10.1093/bioinformatics/bts655

By:

Wang, Wenting;
Baladandayuthapani, Veerabhadran;
Morris, Jeffrey S.;
Broom, Bradley M.;
Manyam, Ganiraju;
Do, Kim-Anh

Publication type:

Article

NURBS: a database of experimental and predicted nuclear receptor binding sites of mouse.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 295, doi. 10.1093/bioinformatics/bts693

By:

Fang, Yaping;
Liu, Hui-Xin;
Zhang, Ning;
Guo, Grace L.;
Wan, Yu-Jui Yvonne;
Fang, Jianwen

Publication type:

Article

PASS-bis: a bisulfite aligner suitable for whole methylome analysis of Illumina and SOLiD reads.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 268, doi. 10.1093/bioinformatics/bts675

By:

Campagna, Davide;
Telatin, Andrea;
Forcato, Claudio;
Vitulo, Nicola;
Valle, Giorgio

Publication type:

Article

High-throughput microbial population genomics using the Cortex variation assembler.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 275, doi. 10.1093/bioinformatics/bts673

By:

Iqbal, Zamin;
Turner, Isaac;
McVean, Gil

Publication type:

Article

ImgLib2—generic image processing in Java.

Published in:

2013

By:

Pietzsch, Tobias;
Preibisch, Stephan;
Tomančák, Pavel;
Saalfeld, Stephan

Publication type:

Correction Notice

VAGUE: a graphical user interface for the Velvet assembler.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 264, doi. 10.1093/bioinformatics/bts664

By:

Powell, David R.;
Seemann, Torsten

Publication type:

Article

An effective framework for reconstructing gene regulatory networks from genetical genomics data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 246, doi. 10.1093/bioinformatics/bts679

By:

Flassig, R. J.;
Heise, S.;
Sundmacher, K.;
Klamt, S.

Publication type:

Article

Efficient statistical significance approximation for local similarity analysis of high-throughput time series data.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 230, doi. 10.1093/bioinformatics/bts668

By:

Xia, Li C.;
Ai, Dongmei;
Cram, Jacob;
Fuhrman, Jed A.;
Sun, Fengzhu

Publication type:

Article

Visualization and Phospholipid Identification (VaLID): online integrated search engine capable of identifying and visualizing glycerophospholipids with given mass.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 284, doi. 10.1093/bioinformatics/bts662

By:

Blanchard, Alexandre P.;
McDowell, Graeme S. V.;
Valenzuela, Nico;
Xu, Hongbin;
Gelbard, Sarah;
Bertrand, Martin;
Slater, Gary W.;
Figeys, Daniel;
Fai, Stephen;
Bennett, Steffany A. L.

Publication type:

Article

Largenet2: an object-oriented programming library for simulating large adaptive networks.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 277, doi. 10.1093/bioinformatics/bts663

By:

Zschaler, Gerd;
Gross, Thilo

Publication type:

Article

Density parameter estimation for finding clusters of homologous proteins—tracing actinobacterial pathogenicity lifestyles.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 215, doi. 10.1093/bioinformatics/bts653

By:

Röttger, Richard;
Kalaghatgi, Prabhav;
Sun, Peng;
Soares, Siomar de Castro;
Azevedo, Vasco;
Wittkop, Tobias;
Baumbach, Jan

Publication type:

Article

Stability analysis of phylogenetic trees.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 166, doi. 10.1093/bioinformatics/bts657

By:

Sheikh, Saad I.;
Kahveci, Tamer;
Ranka, Sanjay;
Gordon Burleigh, J.

Publication type:

Article

A system for exact and approximate genetic linkage analysis of SNP data in large pedigrees.

Published in:

Bioinformatics, 2013, v. 29, n. 2, p. 197, doi. 10.1093/bioinformatics/bts658

By:

Silberstein, Mark;
Weissbrod, Omer;
Otten, Lars;
Tzemach, Anna;
Anisenia, Andrei;
Shtark, Oren;
Tuberg, Dvir;
Galfrin, Eddie;
Gannon, Irena;
Shalata, Adel;
Borochowitz, Zvi U.;
Dechter, Rina;
Thompson, Elizabeth;
Geiger, Dan

Publication type:

Article