Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 19

Results: 32

Modeling nucleosome position distributions from experimental nucleosome positioning maps.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2380

By:

Schöpflin, Robert;
Teif, Vladimir B.;
Müller, Oliver;
Weinberg, Christin;
Rippe, Karsten;
Wedemann, Gero

Publication type:

Article

CoDNaS: a database of conformational diversity in the native state of proteins.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2512, doi. 10.1093/bioinformatics/btt405

By:

Monzon, Alexander Miguel;
Juritz, Ezequiel;
Fornasari, María Silvina;
Parisi, Gustavo

Publication type:

Article

A pattern matching approach to the automatic selection of particles from low-contrast electron micrographs.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2460, doi. 10.1093/bioinformatics/btt429

By:

Abrishami, V.;
Zaldívar-Peraza, A.;
de la Rosa-Trevín, J. M.;
Vargas, J.;
Otón, J.;
Marabini, R.;
Shkolnisky, Y.;
Carazo, J. M.;
Sorzano, C. O. S.

Publication type:

Article

deltaGseg: macrostate estimation via molecular dynamics simulations and multiscale time series analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2501, doi. 10.1093/bioinformatics/btt413

By:

Low, Diana H. P.;
Motakis, Efthymios

Publication type:

Article

Tiki, at the head of a new superfamily of enzymes.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2371, doi. 10.1093/bioinformatics/btt412

By:

Sanchez-Pulido, Luis;
Ponting, Chris P.

Publication type:

Article

SAPA tool: finding protein regions by combination of amino acid composition, scaled profiles, patterns and rules.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2496, doi. 10.1093/bioinformatics/btt411

By:

Maier, Josef;
Adzhubei, Alexei A.;
Egge-Jacobsen, Wolfgang

Publication type:

Article

ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2485, doi. 10.1093/bioinformatics/btt428

By:

Kucukural, Alper;
Özadam, Hakan;
Singh, Guramrit;
Moore, Melissa J.;
Cenik, Can

Publication type:

Article

SICOP: identifying significant co-interaction patterns.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2503, doi. 10.1093/bioinformatics/btt408

By:

Spitz, Andreas;
Zweig, Katharina A.;
Horvát, Emőke-Ágnes

Publication type:

Article

MeltDB 2.0–advances of the metabolomics software system.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2452, doi. 10.1093/bioinformatics/btt414

By:

Kessler, Nikolas;
Neuweger, Heiko;
Bonte, Anja;
Langenkämper, Georg;
Niehaus, Karsten;
Nattkemper, Tim W.;
Goesmann, Alexander

Publication type:

Article

MIG: Multi-Image Genome viewer.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2477, doi. 10.1093/bioinformatics/btt406

By:

McGowan, Simon J.;
Hughes, Jim R.;
Han, Zong-Pei;
Taylor, Stephen

Publication type:

Article

nhmmer: DNA homology search with profile HMMs.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2487, doi. 10.1093/bioinformatics/btt403

By:

Wheeler, Travis J.;
Eddy, Sean R.

Publication type:

Article

ROBNCA: robust network component analysis for recovering transcription factor activities.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2410, doi. 10.1093/bioinformatics/btt433

By:

Noor, Amina;
Ahmad, Aitzaz;
Serpedin, Erchin;
Nounou, Mohamed;
Nounou, Hazem

Publication type:

Article

mpMoRFsDB: a database of molecular recognition features in membrane proteins.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2517, doi. 10.1093/bioinformatics/btt427

By:

Gypas, Foivos;
Tsaousis, Georgios N.;
Hamodrakas, Stavros J.

Publication type:

Article

SPNConverter: a new link between static and dynamic complex network analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2507, doi. 10.1093/bioinformatics/btt421

By:

Dent, Jennifer E.;
Yang, Xinyi;
Nardini, Christine

Publication type:

Article

GALANT: a Cytoscape plugin for visualizing data as functional landscapes projected onto biological networks.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2505, doi. 10.1093/bioinformatics/btt377

By:

Camilo, Esther;
Bovolenta, Luiz A.;
Acencio, Marcio L.;
Rybarczyk-Filho, José L.;
Castro, Mauro A.A.;
Moreira, José C.F.;
Lemke, Ney

Publication type:

Article

DRAW+SneakPeek: Analysis workflow and quality metric management for DNA-seq experiments.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2498, doi. 10.1093/bioinformatics/btt422

By:

Lin, Chiao-Feng;
Valladares, Otto;
Childress, D. Micah;
Klevak, Egor;
Geller, Evan T.;
Hwang, Yih-Chii;
Tsai, Ellen A.;
Schellenberg, Gerard D.;
Wang, Li-San

Publication type:

Article

RACER: Rapid and accurate correction of errors in reads.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2490, doi. 10.1093/bioinformatics/btt407

By:

Ilie, Lucian;
Molnar, Michael

Publication type:

Article

Indel and Carryforward Correction (ICC): a new analysis approach for processing 454 pyrosequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2402, doi. 10.1093/bioinformatics/btt434

By:

Deng, Wenjie;
Maust, Brandon S.;
Westfall, Dylan H.;
Chen, Lennie;
Zhao, Hong;
Larsen, Brendan B.;
Iyer, Shyamala;
Liu, Yi;
Mullins, James I.

Publication type:

Article

BLAD: A comprehensive database of widely circulated beta-lactamases.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2515, doi. 10.1093/bioinformatics/btt417

By:

Danishuddin, Mohd;
Hassan Baig, Mohd;
Kaushal, Lalima;
Khan, Asad U

Publication type:

Article

Assessing association between protein truncating variants and quantitative traits.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2419

By:

Rivas, Manuel A.;
Pirinen, Matti;
Neville, Matthew J.;
Gaulton, Kyle J.;
Moutsianas, Loukas;
Lindgren, Cecilia M.;
Karpe, Fredrik;
McCarthy, Mark I.;
Donnelly, Peter

Publication type:

Article

Kinannote, a computer program to identify and classify members of the eukaryotic protein kinase superfamily.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2387, doi. 10.1093/bioinformatics/btt419

By:

Goldberg, Jonathan M.;
Griggs, Allison D.;
Smith, Janet L.;
Haas, Brian J.;
Wortman, Jennifer R.;
Zeng, Qiandong

Publication type:

Article

Distilled single-cell genome sequencing and de novo assembly for sparse microbial communities.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2395, doi. 10.1093/bioinformatics/btt420

By:

Taghavi, Zeinab;
Movahedi, Narjes S.;
Drǎghici, Sorin;
Chitsaz, Hamidreza

Publication type:

Article

TFcheckpoint: a curated compendium of specific DNA-binding RNA polymerase II transcription factors.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2519, doi. 10.1093/bioinformatics/btt432

By:

Chawla, Konika;
Tripathi, Sushil;
Thommesen, Liv;
Lægreid, Astrid;
Kuiper, Martin

Publication type:

Article

Joint haplotype phasing and genotype calling of multiple individuals using haplotype informative reads.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2427, doi. 10.1093/bioinformatics/btt418

By:

Zhang, Kui;
Zhi, Degui

Publication type:

Article

SW#–GPU-enabled exact alignments on genome scale.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2494, doi. 10.1093/bioinformatics/btt410

By:

Korpar, Matija;
Šikić, Mile

Publication type:

Article

Statistical agglomeration: peak summarization for direct infusion lipidomics.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2445, doi. 10.1093/bioinformatics/btt376

By:

Smith, Rob;
Anthonymuthu, Tamil S.;
Ventura, Dan;
Prince, John T.

Publication type:

Article

Graph-based peak alignment algorithms for multiple liquid chromatography-mass spectrometry datasets.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2469, doi. 10.1093/bioinformatics/btt435

By:

Wang, Jijie;
Lam, Henry

Publication type:

Article

Exploring the role of human miRNAs in virus–host interactions using systematic overlap analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2375, doi. 10.1093/bioinformatics/btt391

By:

Li, Zhenpeng;
Cui, Xiuliang;
Li, Fei;
Li, Peng;
Ni, Ming;
Wang, Shengqi;
Bo, Xiaochen

Publication type:

Article

OncoSNP-SEQ: a statistical approach for the identification of somatic copy number alterations from next-generation sequencing of cancer genomes.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2482, doi. 10.1093/bioinformatics/btt416

By:

Yau, Christopher

Publication type:

Article

PhosphoChain: a novel algorithm to predict kinase and phosphatase networks from high-throughput expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2435, doi. 10.1093/bioinformatics/btt387

By:

Chen, Wei-Ming;
Danziger, Samuel A.;
Chiang, Jung-Hsien;
Aitchison, John D.

Publication type:

Article

Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2479, doi. 10.1093/bioinformatics/btt415

By:

Jost, Daniel

Publication type:

Article

SubNet: a Java application for subnetwork extraction.

Published in:

Bioinformatics, 2013, v. 29, n. 19, p. 2509, doi. 10.1093/bioinformatics/btt430

By:

Zhang, Quanwei;
Zhang, Zhengdong D.

Publication type:

Article