Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 18

Results: 24

Lnetwork: an efficient and effective method for constructing phylogenetic networks.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2269, doi. 10.1093/bioinformatics/btt378

By:

Wang, Juan;
Guo, Maozu;
Liu, Xiaoyan;
Liu, Yang;
Wang, Chunyu;
Xing, Linlin;
Che, Kai

Publication type:

Article

Scalable metagenomic taxonomy classification using a reference genome database.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2253, doi. 10.1093/bioinformatics/btt389

By:

Ames, Sasha K.;
Hysom, David A.;
Gardner, Shea N.;
Lloyd, G. Scott;
Gokhale, Maya B.;
Allen, Jonathan E.

Publication type:

Article

Prediction of site-specific interactions in antibody-antigen complexes: the proABC method and server.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2285, doi. 10.1093/bioinformatics/btt369

By:

Olimpieri, Pier Paolo;
Chailyan, Anna;
Tramontano, Anna;
Marcatili, Paolo

Publication type:

Article

TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2292, doi. 10.1093/bioinformatics/btt381

By:

Nariai, Naoki;
Hirose, Osamu;
Kojima, Kaname;
Nagasaki, Masao

Publication type:

Article

The signal within the noise: efficient inference of stochastic gene regulation models using fluorescence histograms and stochastic simulations.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2311, doi. 10.1093/bioinformatics/btt380

By:

Lillacci, Gabriele;
Khammash, Mustafa

Publication type:

Article

pyRMSD: a Python package for efficient pairwise RMSD matrix calculation and handling.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2363, doi. 10.1093/bioinformatics/btt402

By:

Gil, Víctor A.;
Guallar, Víctor

Publication type:

Article

BioSmalltalk: a pure object system and library for bioinformatics.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2355, doi. 10.1093/bioinformatics/btt398

By:

Morales, Hernán F.;
Giovambattista, Guillermo

Publication type:

Article

Exhaustively characterizing feasible logic models of a signaling network using Answer Set Programming.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2320, doi. 10.1093/bioinformatics/btt393

By:

Guziolowski, Carito;
Videla, Santiago;
Eduati, Federica;
Thiele, Sven;
Cokelaer, Thomas;
Siegel, Anne;
Saez-Rodriguez, Julio

Publication type:

Article

An integrative approach to understanding the combinatorial histone code at functional elements.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2231, doi. 10.1093/bioinformatics/btt382

By:

Lai, William K. M.;
Buck, Michael J.

Publication type:

Article

Allosite: a method for predicting allosteric sites.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2357, doi. 10.1093/bioinformatics/btt399

By:

Huang, Wenkang;
Lu, Shaoyong;
Huang, Zhimin;
Liu, Xinyi;
Mou, Linkai;
Luo, Yu;
Zhao, Yanlong;
Liu, Yaqin;
Chen, Zhongjie;
Hou, Tingjun;
Zhang, Jian

Publication type:

Article

mRMRe: an R package for parallelized mRMR ensemble feature selection.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2365, doi. 10.1093/bioinformatics/btt383

By:

De Jay, Nicolas;
Papillon-Cavanagh, Simon;
Olsen, Catharina;
El-Hachem, Nehme;
Bontempi, Gianluca;
Haibe-Kains, Benjamin

Publication type:

Article

OncodriveCLUST: exploiting the positional clustering of somatic mutations to identify cancer genes.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2238, doi. 10.1093/bioinformatics/btt395

By:

Tamborero, David;
Gonzalez-Perez, Abel;
Lopez-Bigas, Nuria

Publication type:

Article

Naive binning improves phylogenomic analyses.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2277, doi. 10.1093/bioinformatics/btt394

By:

Bayzid, Md Shamsuzzoha;
Warnow, Tandy

Publication type:

Article

Inference of alternative splicing from RNA-Seq data with probabilistic splice graphs.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2300, doi. 10.1093/bioinformatics/btt396

By:

LeGault, Laura H.;
Dewey, Colin N.

Publication type:

Article

A computational method to preclude multistationarity in networks of interacting species.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2327, doi. 10.1093/bioinformatics/btt400

By:

Feliu, Elisenda;
Wiuf, Carsten

Publication type:

Article

Automated QuantMap for rapid quantitative molecular network topology analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2369, doi. 10.1093/bioinformatics/btt390

By:

Schaal, Wesley;
Hammerling, Ulf;
Gustafsson, Mats G.;
Spjuth, Ola

Publication type:

Article

A comparative analysis of algorithms for somatic SNV detection in cancer.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2223, doi. 10.1093/bioinformatics/btt375

By:

Roberts, Nicola D.;
Kortschak, R. Daniel;
Parker, Wendy T.;
Schreiber, Andreas W.;
Branford, Susan;
Scott, Hamish S.;
Glonek, Garique;
Adelson, David L.

Publication type:

Article

MMuFLR: missense mutation and frameshift location reporter.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2353, doi. 10.1093/bioinformatics/btt385

By:

Rathe, Susan K.;
Johnson, James E.;
Silverstein, Kevin A.T.;
Erdmann, Jesse J.;
Watson, Adrienne L.;
Popescu, Flavia E.;
Ohlfest, John R.;
Largaespada, David A.

Publication type:

Article

MaGnET: Malaria Genome Exploration Tool.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2350, doi. 10.1093/bioinformatics/btt384

By:

Sharman, Joanna L.;
Gerloff, Dietlind L.

Publication type:

Article

Leveraging reads that span multiple single nucleotide polymorphisms for haplotype inference from sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2245, doi. 10.1093/bioinformatics/btt386

By:

Yang, Wen-Yun;
Hormozdiari, Farhad;
Wang, Zhanyong;
He, Dan;
Pasaniuc, Bogdan;
Eskin, Eleazar

Publication type:

Article

iLoops: a protein–protein interaction prediction server based on structural features.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2360, doi. 10.1093/bioinformatics/btt401

By:

Planas-Iglesias, Joan;
Marin-Lopez, Manuel A.;
Bonet, Jaume;
Garcia-Garcia, Javier;
Oliva, Baldo

Publication type:

Article

Determining the subcellular location of new proteins from microscope images using local features.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2343, doi. 10.1093/bioinformatics/btt392

By:

Coelho, Luis Pedro;
Kangas, Joshua D.;
Naik, Armaghan W.;
Osuna-Highley, Elvira;
Glory-Afshar, Estelle;
Fuhrman, Margaret;
Simha, Ramanuja;
Berget, Peter B.;
Jarvik, Jonathan W.;
Murphy, Robert F.

Publication type:

Article

Testing for presence of known and unknown molecules in imaging mass spectrometry.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2335, doi. 10.1093/bioinformatics/btt388

By:

Alexandrov, Theodore;
Bartels, Andreas

Publication type:

Article

An integrated toolkit for accurate prediction and analysis of cis-regulatory motifs at a genome scale.

Published in:

Bioinformatics, 2013, v. 29, n. 18, p. 2261, doi. 10.1093/bioinformatics/btt397

By:

Ma, Qin;
Liu, Bingqiang;
Zhou, Chuan;
Yin, Yanbin;
Li, Guojun;
Xu, Ying

Publication type:

Article