Works matching IS 13674803 AND DT 2013 AND VI 29 AND IP 16

Results: 29

Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2041, doi. 10.1093/bioinformatics/btt314

By:

Raczy, Come;
Petrovski, Roman;
Saunders, Christopher T.;
Chorny, Ilya;
Kruglyak, Semyon;
Margulies, Elliott H.;
Chuang, Han-Yu;
Källberg, Morten;
Kumar, Swathi A.;
Liao, Arnold;
Little, Kristina M.;
Strömberg, Michael P.;
Tanner, Stephen W.

Publication type:

Article

WhichCyp: prediction of cytochromes P450 inhibition.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2051, doi. 10.1093/bioinformatics/btt325

By:

Rostkowski, Michał;
Spjuth, Ola;
Rydberg, Patrik

Publication type:

Article

BNFinder2: Faster Bayesian network learning and Bayesian classification.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2068, doi. 10.1093/bioinformatics/btt323

By:

Dojer, Norbert;
Bednarz, Paweł;
Podsiadło, Agnieszka;
Wilczyński, Bartek

Publication type:

Article

Inferring disease association using clinical factors in a combinatorial manner and their use in drug repositioning.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2017, doi. 10.1093/bioinformatics/btt327

By:

Jung, Jinmyung;
Lee, Doheon

Publication type:

Article

Sipros/ProRata: a versatile informatics system for quantitative community proteomics.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2064, doi. 10.1093/bioinformatics/btt329

By:

Wang, Yingfeng;
Ahn, Tae-Hyuk;
Li, Zhou;
Pan, Chongle

Publication type:

Article

Porter, PaleAle 4.0: high-accuracy prediction of protein secondary structure and relative solvent accessibility.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2056, doi. 10.1093/bioinformatics/btt344

By:

Mirabello, Claudio;
Pollastri, Gianluca

Publication type:

Article

Insights into polypharmacology from drug-domain associations.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1934, doi. 10.1093/bioinformatics/btt321

By:

Moya-García, Aurelio A.;
Ranea, Juan A. G.

Publication type:

Article

Joint network and node selection for pathway-based genomic data analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1987, doi. 10.1093/bioinformatics/btt335

By:

Zhe, Shandian;
Naqvi, Syed A. Z.;
Yang, Yifan;
Qi, Yuan

Publication type:

Article

DIGEP-Pred: web service for in silico prediction of drug-induced gene expression profiles based on structural formula.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2062, doi. 10.1093/bioinformatics/btt322

By:

Lagunin, Alexey;
Ivanov, Sergey;
Rudik, Anastasia;
Filimonov, Dmitry;
Poroikov, Vladimir

Publication type:

Article

PING 2.0: an R/Bioconductor package for nucleosome positioning using next-generation sequencing data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2049, doi. 10.1093/bioinformatics/btt348

By:

Woo, Sangsoon;
Zhang, Xuekui;
Sauteraud, Renan;
Robert, François;
Gottardo, Raphael

Publication type:

Article

GSATools: analysis of allosteric communication and functional local motions using a structural alphabet.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2053, doi. 10.1093/bioinformatics/btt326

By:

Pandini, Alessandro;
Fornili, Arianna;
Fraternali, Franca;
Kleinjung, Jens

Publication type:

Article

Automated design of paralogue ratio test assays for the accurate and rapid typing of copy number variation.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1997, doi. 10.1093/bioinformatics/btt330

By:

Veal, Colin D.;
Xu, Hang;
Reekie, Katherine;
Free, Robert;
Hardwick, Robert J.;
McVey, David;
Brookes, Anthony J.;
Hollox, Edward J.;
Talbot, Christopher J.

Publication type:

Article

AdvISER-PYRO: Amplicon Identification using SparsE Representation of PYROsequencing signal.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1963, doi. 10.1093/bioinformatics/btt339

By:

Ambroise, Jérôme;
Piette, Anne-Sophie;
Delcorps, Cathy;
Rigouts, Leen;
de Jong, Bouke C.;
Irenge, Leonid;
Robert, Annie;
Gala, Jean-Luc

Publication type:

Article

Human interactome resource and gene set linkage analysis for the functional interpretation of biologically meaningful gene sets.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2024, doi. 10.1093/bioinformatics/btt353

By:

Zhou, Xi;
Chen, Pengcheng;
Wei, Qiang;
Shen, Xueling;
Chen, Xin

Publication type:

Article

Bayesian evolutionary model testing in the phylogenomics era: matching model complexity with computational efficiency.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1970, doi. 10.1093/bioinformatics/btt340

By:

Baele, Guy;
Lemey, Philippe

Publication type:

Article

Multilabel classification for exploiting cross-resistance information in HIV-1 drug resistance prediction.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1946, doi. 10.1093/bioinformatics/btt331

By:

Heider, Dominik;
Senge, Robin;
Cheng, Weiwei;
Hüllermeier, Eyke

Publication type:

Article

EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments.

Published in:

2013

By:

Leng, Ning;
Dawson, John A.;
Thomson, James A.;
Ruotti, Victor;
Rissman, Anna I.;
Smits, Bart M. G.;
Haag, Jill D.;
Gould, Michael N.;
Stewart, Ron M.;
Kendziorski, Christina

Publication type:

Correction Notice

Selection of human tissue-specific elementary flux modes using gene expression data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2009, doi. 10.1093/bioinformatics/btt328

By:

Rezola, Alberto;
Pey, Jon;
de Figueiredo, Luis F.;
Podhorski, Adam;
Schuster, Stefan;
Rubio, Angel;
Planes, Francisco J.

Publication type:

Article

PiHelper: an open source framework for drug-target and antibody-target data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2071, doi. 10.1093/bioinformatics/btt345

By:

Aksoy, Bülent Arman;
Gao, Jianjiong;
Dresdner, Gideon;
Wang, Weiqing;
Root, Alex;
Jing, Xiaohong;
Cerami, Ethan;
Sander, Chris

Publication type:

Article

Whole-Genome rVISTA: a tool to determine enrichment of transcription factor binding sites in gene promoters from transcriptomic data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2059, doi. 10.1093/bioinformatics/btt318

By:

Dubchak, Inna;
Munoz, Matthew;
Poliakov, Alexandre;
Salomonis, Nathan;
Minovitsky, Simon;
Bodmer, Rolf;
Zambon, Alexander C.

Publication type:

Article

UniNovo: a universal tool for de novo peptide sequencing.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1953, doi. 10.1093/bioinformatics/btt338

By:

Jeong, Kyowon;
Kim, Sangtae;
Pevzner, Pavel A.

Publication type:

Article

NOA: a cytoscape plugin for network ontology analysis.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2066, doi. 10.1093/bioinformatics/btt334

By:

Zhang, Chao;
Wang, Jiguang;
Hanspers, Kristina;
Xu, Dong;
Chen, Luonan;
Pico, Alexander R.

Publication type:

Article

GAT: a simulation framework for testing the association of genomic intervals.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2046, doi. 10.1093/bioinformatics/btt343

By:

Heger, Andreas;
Webber, Caleb;
Goodson, Martin;
Ponting, Chris P.;
Lunter, Gerton

Publication type:

Article

Crowdsourcing for bioinformatics.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1925, doi. 10.1093/bioinformatics/btt333

By:

Good, Benjamin M.;
Su, Andrew I.

Publication type:

Article

Exact algorithms for haplotype assembly from whole-genome sequence data.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1938, doi. 10.1093/bioinformatics/btt349

By:

Chen, Zhi-Zhong;
Deng, Fei;
Wang, Lusheng

Publication type:

Article

An image-based multi-label human protein subcellular localization predictor (iLocator) reveals protein mislocalizations in cancer tissues.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2032, doi. 10.1093/bioinformatics/btt320

By:

Xu, Ying-Ying;
Yang, Fan;
Zhang, Yang;
Shen, Hong-Bin

Publication type:

Article

DMEAS: DNA methylation entropy analysis software.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2044, doi. 10.1093/bioinformatics/btt332

By:

He, Jianlin;
Sun, Xinxi;
Shao, Xiaojian;
Liang, Liji;
Xie, Hehuang

Publication type:

Article

Exploration of conformational transition pathways from coarse-grained simulations.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 1980, doi. 10.1093/bioinformatics/btt324

By:

Sfriso, Pedro;
Hospital, Adam;
Emperador, Agustí;
Orozco, Modesto

Publication type:

Article

Drug–target interaction prediction through domain-tuned network-based inference.

Published in:

Bioinformatics, 2013, v. 29, n. 16, p. 2004, doi. 10.1093/bioinformatics/btt307

By:

Alaimo, Salvatore;
Pulvirenti, Alfredo;
Giugno, Rosalba;
Ferro, Alfredo

Publication type:

Article